Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 1.2e-285 985.7 478 100.0
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 5.1e-146 521.9 489 56.4
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 1.5e-145 520.4 480 58.3
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 9.5e-145 517.7 481 57.4
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 5.8e-142 508.4 480 56.7
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.3e-141 507.3 480 57.3
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 2.9e-141 506.1 478 55.6
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 8.4e-141 504.6 480 56.5
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 1.4e-140 503.8 476 55.3
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 2.4e-140 503.1 480 55.8
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 1.2e-139 500.7 476 54.8
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 2.1e-139 500.0 475 55.2
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 3.5e-139 499.2 483 55.7
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 4.6e-139 498.8 480 54.8
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 4.6e-139 498.8 480 55.4
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 7.8e-139 498.0 478 54.8
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 1.7e-138 496.9 485 55.1
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 1.7e-138 496.9 481 54.3
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 3.0e-138 496.1 483 54.2
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 5.1e-138 495.4 484 54.5
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 5.1e-138 495.4 477 54.9
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 6.6e-138 495.0 477 54.9
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 8.6e-138 494.6 479 54.9
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 8.6e-138 494.6 477 55.1
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 8.6e-138 494.6 483 55.1
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 8.6e-138 494.6 481 54.9
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 1.1e-137 494.2 481 54.7
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 1.9e-137 493.4 486 54.9
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 3.3e-137 492.7 482 54.6
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 3.3e-137 492.7 478 55.2
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 5.6e-137 491.9 480 55.2
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 5.6e-137 491.9 479 54.3
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 9.6e-137 491.1 480 54.8
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 1.6e-136 490.3 483 54.9
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 2.8e-136 489.6 477 54.3
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.8e-136 489.6 478 53.8
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 3.6e-136 489.2 480 55.2
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 3.6e-136 489.2 482 54.4
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 4.7e-136 488.8 502 53.0
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 6.2e-136 488.4 482 53.9
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 8.1e-136 488.0 464 55.6
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 8.1e-136 488.0 477 55.1
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 8.1e-136 488.0 481 54.5
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 1.1e-135 487.6 478 55.0
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 1.1e-135 487.6 480 55.0
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 1.4e-135 487.3 478 54.4
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.4e-135 487.3 480 54.8
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 1.8e-135 486.9 479 53.9
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 2.4e-135 486.5 481 54.5
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 2.4e-135 486.5 481 53.8
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 3.1e-135 486.1 483 54.7
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 3.1e-135 486.1 479 54.1
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 3.1e-135 486.1 479 54.1
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 4.0e-135 485.7 478 53.3
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 5.2e-135 485.3 480 54.0
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 8.9e-135 484.6 477 54.3
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 3.4e-134 482.6 480 54.6
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 4.4e-134 482.3 480 54.0
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 4.4e-134 482.3 487 54.4
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 7.6e-134 481.5 489 54.0
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 9.9e-134 481.1 481 53.8
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 1.3e-133 480.7 508 52.0
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 1.7e-133 480.3 495 52.7
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 2.2e-133 479.9 461 55.3
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 3.8e-133 479.2 464 54.7
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 6.4e-133 478.4 462 55.4
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 1.9e-132 476.9 486 53.9
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 2.4e-132 476.5 487 54.0
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.7e-131 473.0 508 52.2
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 2.7e-131 473.0 509 51.3
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 7.8e-131 471.5 495 53.1
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 2.3e-130 469.9 464 54.3
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 1.5e-129 467.2 534 49.3
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 3.3e-129 466.1 518 52.1
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 9.6e-129 464.5 480 54.0
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 1.4e-127 460.7 458 54.8
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.8e-127 460.3 518 50.6
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 2.4e-127 459.9 472 52.1
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 3.1e-127 459.5 479 52.4
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 2.6e-126 456.4 541 49.5
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 2.9e-125 453.0 506 51.6
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 6.0e-123 445.3 479 50.7
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.3e-122 444.1 458 51.5
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 1.1e-121 441.0 561 47.1
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 5.8e-118 428.7 482 49.0
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 7.6e-118 428.3 479 50.5
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 1.9e-116 423.7 445 52.6
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.6e-115 420.6 486 49.4
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 2.7e-115 419.9 512 47.9
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 5.1e-114 415.6 480 49.8
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 9.6e-113 411.4 486 49.2
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 3.4e-110 402.9 501 47.1
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 9.3e-108 394.8 498 46.6
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 6.0e-107 392.1 479 44.9
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 7.4e-105 385.2 493 47.5
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 5.1e-98 362.5 480 45.6
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 9.7e-97 358.2 398 52.5
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 3.1e-95 353.2 324 56.2
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 5.0e-93 345.9 376 52.1
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 1.4e-92 344.4 399 49.9
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 3.6e-91 339.7 379 51.7
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.0e-90 338.2 392 48.5
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.0e-90 338.2 481 44.1
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 3.9e-90 336.3 235 66.4
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 8.8e-90 335.1 400 50.0
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.9e-85 320.1 427 44.5
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 2.9e-85 320.1 397 47.1
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 2.3e-82 310.5 329 54.1
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.6e-78 297.7 377 48.5
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 5.7e-73 279.3 361 47.6
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 7.0e-71 272.3 293 50.9
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 2.2e-69 267.3 174 67.8
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 3.8e-69 266.5 501 40.1
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 5.0e-61 239.6 360 43.3
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.8e-59 233.8 360 42.2
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 2.6e-49 200.7 143 65.7
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 7.3e-36 156.0 89 75.3
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.2e-35 155.2 86 75.6
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 1.6e-27 128.3 171 42.7
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 2.6e-25 120.9 86 65.1
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 1.4e-23 115.2 433 29.8
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 1.6e-22 111.7 58 75.9
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 7.8e-22 109.4 60 71.7
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.1e-18 97.4 90 58.9
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 1.9e-12 78.2 89 48.3
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 4.0e-10 70.5 113 40.7


User provided reference genes

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