Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G091 Micromonas commoda HOM05D004758 ORTHO05D006063 0.0e+00 1334.3 875 100.0
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 1.3e-67 262.3 883 41.8
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 4.3e-66 257.3 880 34.0
Gorai.013G183600 Gossypium raimondii HOM05D004758 ORTHO05D006063 1.8e-61 241.9 886 39.6
Gohir.A13G156800 Gossypium hirsutum HOM05D004758 ORTHO05D006063 9.2e-61 239.6 885 38.2
Gohir.D13G161600 Gossypium hirsutum HOM05D004758 ORTHO05D006063 1.2e-60 239.2 886 39.6
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 2.0e-60 238.4 880 29.1
Actinidia08754 Actinidia chinensis HOM05D004758 ORTHO05D006063 1.6e-57 228.8 880 38.5
CARHR196430 Cardamine hirsuta HOM05D004758 ORTHO05D006063 1.6e-57 228.8 886 38.0
ECA236G2519 Erigeron canadensis HOM05D004758 ORTHO05D006063 3.6e-57 227.6 878 36.6
AL6G27760 Arabidopsis lyrata HOM05D004758 ORTHO05D006063 4.7e-57 227.3 892 38.0
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 8.0e-57 226.5 881 37.3
EL10Ac1g01635 Beta vulgaris HOM05D004758 ORTHO05D006063 1.0e-56 226.1 880 26.7
SMO358G0628 Selaginella moellendorffii HOM05D004758 ORTHO05D006063 4.0e-56 224.2 874 39.4
Thecc.05G217400 Theobroma cacao HOM05D004758 ORTHO05D006063 1.2e-55 222.6 882 39.3
TAR375G0794 Trochodendron aralioides HOM05D004758 ORTHO05D006063 1.2e-55 222.6 881 36.7
COL.COLO4_37813 Corchorus olitorius HOM05D004758 ORTHO05D006063 3.4e-55 221.1 886 37.0
Ah.05g168380 Amaranthus hybridus HOM05D004758 ORTHO05D006063 4.4e-55 220.7 890 35.1
Ciclev10018804m.g Citrus clementina HOM05D004758 ORTHO05D006063 4.4e-55 220.7 887 40.8
AT5G16750 Arabidopsis thaliana HOM05D004758 ORTHO05D006063 1.3e-54 219.2 887 37.3
Sp6g27370 Schrenkiella parvula HOM05D004758 ORTHO05D006063 1.3e-54 219.2 886 37.5
Carub.0006s1497 Capsella rubella HOM05D004758 ORTHO05D006063 1.7e-54 218.8 886 37.6
Thhalv10012644m.g Eutrema salsugineum HOM05D004758 ORTHO05D006063 1.7e-54 218.8 888 37.7
C02p08570 Brassica napus HOM05D004758 ORTHO05D006063 2.2e-54 218.4 888 37.7
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 3.7e-54 217.6 888 38.5
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 3.7e-54 217.6 888 38.5
C09p60320 Brassica napus HOM05D004758 ORTHO05D006063 4.9e-54 217.2 897 38.4
Lsat_1_v5_gn_7_26400 Lactuca sativa HOM05D004758 ORTHO05D006063 8.3e-54 216.5 880 37.7
Cre07.g344050 Chlamydomonas reinhardtii HOM05D004758 ORTHO05D006063 1.1e-53 216.1 955 33.0
MELO3C002835.2 Cucumis melo HOM05D004758 ORTHO05D006063 1.1e-53 216.1 886 37.0
THA.LOC104827198 Tarenaya hassleriana HOM05D004758 ORTHO05D006063 1.1e-53 216.1 883 36.9
BcaC04g18853 Brassica carinata HOM05D004758 ORTHO05D006063 4.1e-53 214.2 892 38.2
BolC2t06772H Brassica oleracea HOM05D004758 ORTHO05D006063 5.4e-53 213.8 888 37.4
TPR.G37444 Trifolium pratense HOM05D004758 ORTHO05D006063 5.4e-53 213.8 893 39.0
BolC9t58865H Brassica oleracea HOM05D004758 ORTHO05D006063 9.2e-53 213.0 888 38.3
VMungo1215G2684 Vigna mungo HOM05D004758 ORTHO05D006063 1.2e-52 212.6 894 36.2
A02p03760 Brassica napus HOM05D004758 ORTHO05D006063 1.6e-52 212.2 888 37.6
BraA02t05341Z Brassica rapa HOM05D004758 ORTHO05D006063 1.6e-52 212.2 888 37.6
CsaV3_1G037130 Cucumis sativus L. HOM05D004758 ORTHO05D006063 3.5e-52 211.1 884 37.0
Hund26668 Selenicereus undatus HOM05D004758 ORTHO05D006063 3.5e-52 211.1 887 38.7
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 6.0e-52 210.3 882 38.8
BcaC03g18515 Brassica carinata HOM05D004758 ORTHO05D006063 7.8e-52 209.9 883 37.0
Medtr4g105700 Medicago truncatula HOM05D004758 ORTHO05D006063 5.0e-51 207.2 888 37.4
Peaxi162Scf00516g00672 Petunia axillaris HOM05D004758 ORTHO05D006063 8.6e-51 206.5 873 39.3
Sed0006906 Sechium edule HOM05D004758 ORTHO05D006063 8.6e-51 206.5 885 36.6
ClCG09G017100 Citrullus lanatus HOM05D004758 ORTHO05D006063 1.1e-50 206.1 886 36.3
Manes.09G127900 Manihot esculenta HOM05D004758 ORTHO05D006063 1.9e-50 205.3 885 36.5
ATR0829G002 Amborella trichopoda HOM05D004758 ORTHO05D006063 1.2e-49 202.6 883 35.2
Lj4g0021664 Lotus japonicus HOM05D004758 ORTHO05D006063 1.2e-49 202.6 885 37.1
HanXRQChr04g0115571 Helianthus annuus HOM05D004758 ORTHO05D006063 3.6e-49 201.1 916 31.4
Psat4g058120 Pisum sativum HOM05D004758 ORTHO05D006063 4.7e-49 200.7 894 36.6
Glyma.17G089100 Glycine max HOM05D004758 ORTHO05D006063 2.3e-48 198.4 625 32.0
DCAR_014578 Daucus carota HOM05D004758 ORTHO05D006063 4.0e-48 197.6 936 34.5
Mapoly0155s0010 Marchantia polymorpha HOM05D004758 ORTHO05D006063 5.2e-48 197.2 874 38.9
arahy.Tifrunner.gnm1.ann1.MVA0XP Arachis hypogaea HOM05D004758 ORTHO05D006063 6.8e-48 196.8 899 37.4
Phvul.003G200800 Phaseolus vulgaris HOM05D004758 ORTHO05D006063 6.8e-48 196.8 905 35.7
Lalb_Chr12g0201611 Lupinus albus HOM05D004758 ORTHO05D006063 2.6e-47 194.9 911 36.1
Ca_21920_v3 Cicer arietinum L. HOM05D004758 ORTHO05D006063 3.4e-47 194.5 615 33.2
Nn1g00147 Nelumbo nucifera HOM05D004758 ORTHO05D006063 3.4e-47 194.5 881 35.3
Potri.013G079600 Populus trichocarpa HOM05D004758 ORTHO05D006063 3.4e-47 194.5 883 35.4
FAN01G1935 Fragaria x ananassa HOM05D004758 ORTHO05D006063 7.5e-47 193.4 882 38.2
Sc02g0003740 Simmondsia chinensis HOM05D004758 ORTHO05D006063 3.7e-46 191.0 882 37.2
CSS0042937 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 4.9e-46 190.7 826 38.6
Migut.F00084 Erythranthe guttata HOM05D004758 ORTHO05D006063 1.1e-45 189.5 880 35.5
Glyma.05G038000 Glycine max HOM05D004758 ORTHO05D006063 3.2e-45 188.0 624 31.7
Hma1.2p1_0419F.1_g149420 Hydrangea macrophylla HOM05D004758 ORTHO05D006063 7.1e-45 186.8 882 37.3
QL09p022998 Quercus lobata HOM05D004758 ORTHO05D006063 2.7e-44 184.9 881 34.4
MBI04_g20348_MAGBIO Magnolia biondii HOM05D004758 ORTHO05D006063 3.5e-44 184.5 875 32.3
TWI09G0087 Tripterygium wilfordii HOM05D004758 ORTHO05D006063 6.0e-44 183.7 877 34.4
Cfa016059 Carpinus fangiana HOM05D004758 ORTHO05D006063 7.8e-44 183.3 881 34.1
Oeu038086.1 Olea europaea HOM05D004758 ORTHO05D006063 1.3e-43 182.6 885 37.3
HPP92_020800 Vanilla planifolia HOM05D004758 ORTHO05D006063 2.3e-43 181.8 890 33.4
Sabra13G0073200 Salix brachista HOM05D004758 ORTHO05D006063 3.0e-43 181.4 626 31.0
Solyc03g097160.4 Solanum lycopersicum HOM05D004758 ORTHO05D006063 6.6e-43 180.3 879 37.2
SEGI_30407 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 1.1e-42 179.5 513 35.5
arahy.Tifrunner.gnm1.ann1.64XA74 Arachis hypogaea HOM05D004758 ORTHO05D006063 2.5e-42 178.3 888 36.6
Nitab4.5_0004530g0070 Nicotiana tabacum HOM05D004758 ORTHO05D006063 2.5e-42 178.3 881 38.8
Prupe.2G326400 Prunus persica HOM05D004758 ORTHO05D006063 3.3e-42 177.9 881 35.1
Aqoxy5G01707 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 4.3e-42 177.6 885 32.1
MD07G1309100 Malus domestica HOM05D004758 ORTHO05D006063 4.3e-42 177.6 882 36.8
Aqoxy3G02274 Aquilegia oxysepala HOM05D004758 ORTHO05D006063 9.5e-42 176.4 891 31.8
Zm00001eb072270 Zea mays HOM05D004758 ORTHO05D006063 3.6e-41 174.5 895 36.0
Eucgr.K00076 Eucalyptus grandis HOM05D004758 ORTHO05D006063 4.7e-41 174.1 621 30.1
Aa31LG11G12810 Aethionema arabicum HOM05D004758 ORTHO05D006063 1.4e-40 172.6 614 26.9
SGA_v2.0_scaffold18G08524 Striga asiatica HOM05D004758 ORTHO05D006063 1.4e-40 172.6 913 38.6
Zm00001eb429930 Zea mays HOM05D004758 ORTHO05D006063 1.4e-40 172.6 627 32.9
Lj3C885T17 Lonicera japonica HOM05D004758 ORTHO05D006063 1.8e-40 172.2 874 37.0
FAN10G3249 Fragaria x ananassa HOM05D004758 ORTHO05D006063 6.8e-40 170.2 882 37.2
PSO063G1271 Papaver somniferum HOM05D004758 ORTHO05D006063 6.8e-40 170.2 886 37.5
Dinv29141 Davidia involucrata HOM05D004758 ORTHO05D006063 1.2e-39 169.5 881 37.6
GSVIVG01024351001 Vitis vinifera HOM05D004758 ORTHO05D006063 1.2e-39 169.5 874 34.6
Nitab4.5_0000108g0370 Nicotiana tabacum HOM05D004758 ORTHO05D006063 3.4e-39 167.9 608 28.6
Sopen03g027900 Solanum pennellii HOM05D004758 ORTHO05D006063 1.7e-38 165.6 879 37.7
MSTRG.26923 Avicennia marina HOM05D004758 ORTHO05D006063 2.2e-38 165.2 882 38.9
CBR_g29896 Chara braunii HOM05D004758 ORTHO05D006063 8.4e-38 163.3 907 25.5
Haze_00389 Corylus avellana HOM05D004758 ORTHO05D006063 1.4e-37 162.5 623 28.6
CANSAT21G1832 Cannabis sativa HOM05D004758 ORTHO05D006063 2.4e-37 161.8 886 37.1
Lalb_Chr13g0297781 Lupinus albus HOM05D004758 ORTHO05D006063 1.2e-36 159.5 622 37.5
CiPaw.05G215200 Carya illinoinensis HOM05D004758 ORTHO05D006063 1.6e-36 159.1 884 33.6
vmacro06528 Vaccinium macrocarpon HOM05D004758 ORTHO05D006063 2.1e-36 158.7 910 37.7
PRCOL_00002697 Prasinoderma coloniale HOM05D004758 ORTHO05D006063 6.0e-36 157.1 666 33.0
CDE06G0148 Ceratophyllum demersum HOM05D004758 ORTHO05D006063 7.8e-36 156.8 885 35.9
RcHm_v2.0_Chr1g0384251 Rosa chinensis HOM05D004758 ORTHO05D006063 1.3e-35 156.0 621 38.0
CAN.G1131.26 Capsicum annuum HOM05D004758 ORTHO05D006063 1.7e-35 155.6 913 35.7
Cpa.g.sc43.121 Carica papaya HOM05D004758 ORTHO05D006063 3.0e-35 154.8 502 31.3
MD01G1236400 Malus domestica HOM05D004758 ORTHO05D006063 5.6e-34 150.6 881 36.1
PSO782G4173 Papaver somniferum HOM05D004758 ORTHO05D006063 1.6e-33 149.1 619 37.8
SalBow4G2121 Salvia bowleyana HOM05D004758 ORTHO05D006063 2.1e-33 148.7 895 32.7
SalBow4G2875 Salvia bowleyana HOM05D004758 ORTHO05D006063 2.1e-33 148.7 895 32.7
Os04g0592700 Oryza sativa ssp. japonica HOM05D004758 ORTHO05D006063 2.8e-33 148.3 900 34.4
BcaC03g18514 Brassica carinata HOM05D004758 ORTHO05D006063 4.7e-33 147.5 712 36.1
Atru.chr10.1077 Acer truncatum HOM05D004758 ORTHO05D006063 2.0e-31 142.1 552 38.9
Cc08_g01720 Coffea canephora HOM05D004758 ORTHO05D006063 2.2e-30 138.7 619 37.2
unitig_748.g6995 Utricularia gibba HOM05D004758 ORTHO05D006063 2.9e-30 138.3 616 37.0
FAN03G1445 Fragaria x ananassa HOM05D004758 ORTHO05D006063 8.4e-30 136.7 875 35.9
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 1.2e-28 132.9 890 31.2
Potri.019G047300 Populus trichocarpa HOM05D004758 ORTHO05D006063 2.5e-26 125.2 572 38.1
Cfa027159 Carpinus fangiana HOM05D004758 ORTHO05D006063 2.6e-23 115.2 991 21.3
CSS0032843 Camellia sinensis var. sinensis HOM05D004758 ORTHO05D006063 1.7e-22 112.5 484 27.7
Nitab4.5_0000021g0710 Nicotiana tabacum HOM05D004758 ORTHO05D006063 5.6e-18 97.4 880 35.3
SEGI_23303 Sequoiadendron giganteum HOM05D004758 ORTHO05D006063 1.2e-15 89.7 369 44.7
Eucgr.K00075 Eucalyptus grandis HOM05D004758 ORTHO05D006063 2.4e-13 82.0 130 36.9
Lalb_Chr13g0297791 Lupinus albus HOM05D004758 ORTHO05D006063 7.9e-12 77.0 197 43.7
Cc08_g01710 Coffea canephora HOM05D004758 ORTHO05D006063 2.3e-11 75.5 163 41.1
HanXRQChr15g0491711 Helianthus annuus HOM05D004758 ORTHO05D006063 1.1e-10 73.2 258 27.1
SHI02547 Sapria himalayana HOM05D004758 ORTHO05D006063 1.5e-10 72.8 82 40.2
BcaNung04954 Brassica carinata HOM05D004758 ORTHO05D006063 1.9e-10 72.4 87 40.2
RcHm_v2.0_Chr1g0384241 Rosa chinensis HOM05D004758 ORTHO05D006063 2.5e-10 72.0 190 45.8
AUR62013586 Chenopodium quinoa HOM05D004758 ORTHO05D006063 8.1e-09 67.0 75 40.0
Atru.chr10.1076 Acer truncatum HOM05D004758 ORTHO05D006063 1.1e-08 66.6 280 31.8
Zm00001eb153310 Zea mays HOM05D004758 ORTHO05D006063 5.3e-08 64.3 195 28.2
MD01G1069700 Malus domestica HOM05D004758 ORTHO05D000275 2.2e-06 58.9 84 33.3
AUR62013587 Chenopodium quinoa HOM05D004758 ORTHO05D006063 4.9e-06 57.8 234 25.6


User provided reference genes

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