Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.4e-274 949.1 504 100.0
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 2.3e-16 91.3 236 33.5
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 2.6e-15 87.8 263 30.0
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 2.2e-14 84.7 244 29.5
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.7e-14 84.0 207 29.5
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 3.1e-13 80.9 267 26.6
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 5.9e-12 76.6 243 29.6
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.3e-11 74.7 95 38.9
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.6e-11 73.2 222 27.5
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.5e-10 72.0 95 37.9
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.5e-10 72.0 208 29.3
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 4.2e-10 70.5 207 27.5
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.2e-09 68.9 223 30.5
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.6e-09 68.6 117 35.9
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.1e-09 68.2 95 37.9
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.1e-09 68.2 222 27.5
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 3.6e-09 67.4 95 38.9
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.6e-09 67.4 208 28.8
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 3.6e-09 67.4 95 36.8
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.6e-09 67.4 95 38.9
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.7e-09 67.0 95 40.0
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 4.7e-09 67.0 95 36.8
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 4.7e-09 67.0 95 38.9
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 6.1e-09 66.6 95 35.8
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 6.1e-09 66.6 95 37.9
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 6.1e-09 66.6 208 28.4
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 8.0e-09 66.2 95 35.8
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.0e-08 65.9 95 36.8
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 1.0e-08 65.9 95 35.8
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.0e-08 65.9 95 40.0
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.0e-08 65.9 116 33.6
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 1.4e-08 65.5 208 27.9
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.4e-08 65.5 130 32.3
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.4e-08 65.5 224 26.8
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.8e-08 65.1 99 37.4
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.8e-08 65.1 95 35.8
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.8e-08 65.1 208 28.8
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 37.9
CBR_g41171 Chara braunii HOM05D015906 ORTHO05D028597 2.3e-08 64.7 177 31.6
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 36.8
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 36.8
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 38.9
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 38.9
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 35.8
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 35.8
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 35.8
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 37.9
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.3e-08 64.7 95 36.8
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 3.0e-08 64.3 208 26.4
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 3.0e-08 64.3 95 38.9
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.0e-08 64.3 95 36.8
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 3.0e-08 64.3 95 35.8
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.0e-08 64.3 95 35.8
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.0e-08 64.3 95 34.7
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.0e-08 64.3 216 27.8
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.0e-08 64.3 95 37.9
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 4.0e-08 63.9 95 37.9
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 4.0e-08 63.9 95 37.9
CBR_g41172 Chara braunii HOM05D015906 ORTHO05D028597 4.0e-08 63.9 254 27.2
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 4.0e-08 63.9 95 36.8
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.0e-08 63.9 227 26.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.0e-08 63.9 95 34.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 4.0e-08 63.9 95 38.9
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 4.0e-08 63.9 95 36.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 5.2e-08 63.5 93 38.7
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 5.2e-08 63.5 95 37.9
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 5.2e-08 63.5 95 37.9
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 5.2e-08 63.5 208 29.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 5.2e-08 63.5 95 34.7
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 37.9
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 37.9
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 37.9
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 37.9
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 34.7
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 34.7
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 34.7
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 37.9
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 37.9
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 6.8e-08 63.2 130 30.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 6.8e-08 63.2 95 33.7
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 34.7
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 36.8
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 8.9e-08 62.8 197 29.9
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 35.8
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 35.8
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 37.9
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 37.9
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 35.8
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 35.8
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 34.7
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 8.9e-08 62.8 94 38.3
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 33.7
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 8.9e-08 62.8 95 33.7
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-07 62.4 95 34.7
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.2e-07 62.4 95 34.7
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.2e-07 62.4 95 34.7
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-07 62.4 95 37.9
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.2e-07 62.4 95 35.8
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.5e-07 62.0 95 34.7
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.5e-07 62.0 95 34.7
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 1.5e-07 62.0 95 33.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.5e-07 62.0 95 33.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.5e-07 62.0 99 34.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.5e-07 62.0 99 34.3
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.5e-07 62.0 95 36.8
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.5e-07 62.0 228 25.4
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.5e-07 62.0 95 34.7
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.5e-07 62.0 95 34.7
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.0e-07 61.6 95 34.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 2.0e-07 61.6 95 34.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.0e-07 61.6 95 34.7
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 2.0e-07 61.6 217 28.1
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.0e-07 61.6 95 34.7
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.6e-07 61.2 95 34.7
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 2.6e-07 61.2 95 33.7
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 3.4e-07 60.8 99 34.3
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 3.4e-07 60.8 95 34.7
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 3.4e-07 60.8 208 25.5
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 3.4e-07 60.8 94 34.0
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 4.4e-07 60.5 100 34.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 7.5e-07 59.7 96 35.4
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 9.8e-07 59.3 99 32.3
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.8e-07 59.3 95 33.7
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.8e-07 59.3 95 33.7
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 2.8e-06 57.8 93 34.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.7e-06 57.4 89 34.8
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 6.3e-06 56.6 100 33.0


User provided reference genes

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