Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 1.6e-135 486.1 256 100.0
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 1.5e-48 197.2 178 48.9
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.6e-48 196.4 178 48.9
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.6e-48 196.4 178 48.9
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 4.4e-48 195.7 178 47.8
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 4.4e-48 195.7 178 50.0
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 1.3e-47 194.1 178 49.4
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 2.2e-47 193.4 178 48.9
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 2.9e-47 193.0 184 47.3
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 2.9e-47 193.0 168 51.8
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 2.9e-47 193.0 168 51.8
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.9e-47 193.0 184 47.3
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.9
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.9
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.9
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.9
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.9
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.9
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.9
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 3.8e-47 192.6 178 48.3
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 4.9e-47 192.2 178 50.0
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 8.4e-47 191.4 178 48.9
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 1.1e-46 191.0 178 47.8
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.9e-46 190.3 178 48.3
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 3.2e-46 189.5 178 48.3
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 4.2e-46 189.1 178 48.3
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 5.4e-46 188.7 178 48.3
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 7.1e-46 188.3 178 47.8
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.2e-45 187.6 178 47.2
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 1.2e-45 187.6 178 47.2
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 1.2e-45 187.6 178 47.8
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.6e-45 187.2 178 47.2
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 1.6e-45 187.2 183 46.4
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 2.3e-44 183.3 167 49.7
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.1e-43 181.0 178 46.6
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 1.9e-43 180.3 172 47.1
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.9e-43 180.3 178 46.6
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.5e-40 170.6 178 44.9
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 4.5e-40 169.1 155 50.3
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 5.8e-40 168.7 167 48.5
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.6e-40 168.3 178 44.4
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.6e-40 168.3 178 44.4
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 1.3e-39 167.5 157 49.0
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 5.4e-38 162.2 162 46.3
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 9.3e-38 161.4 178 43.3
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 1.9e-35 153.7 137 49.6
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 9.6e-35 151.4 166 45.2
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 4.8e-34 149.1 178 42.7
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.4e-33 147.5 127 52.8
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 2.4e-33 146.7 120 55.8
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.4e-33 146.7 178 39.3
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 6.9e-33 145.2 128 47.7
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 3.4e-32 142.9 188 39.4
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 7.6e-32 141.7 117 54.7
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 1.7e-31 140.6 119 52.9
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.9e-31 139.8 117 53.0
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 1.1e-30 137.9 117 53.0
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 1.4e-30 137.5 117 53.0
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 1.4e-30 137.5 117 53.0
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.9e-30 137.1 117 52.1
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.2e-30 136.3 151 47.7
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 3.2e-30 136.3 117 53.0
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 4.2e-30 136.0 117 53.0
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 5.5e-30 135.6 126 50.8
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 7.1e-30 135.2 117 52.1
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 7.1e-30 135.2 117 52.1
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 7.1e-30 135.2 117 52.1
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.1e-29 133.7 117 52.1
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.7e-29 133.3 115 53.0
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 2.7e-29 133.3 119 51.3
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 2.3e-28 130.2 131 44.3
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 3.9e-28 129.4 193 38.3
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 5.1e-28 129.0 113 52.2
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 8.7e-28 128.3 121 47.9
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 1.1e-27 127.9 117 48.7
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 1.1e-27 127.9 171 38.0
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.5e-27 127.5 114 50.0
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.5e-27 127.5 178 37.6
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.3e-27 125.9 126 45.2
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 4.3e-27 125.9 117 49.6
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 5.6e-27 125.6 178 38.8
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 9.6e-27 124.8 119 47.1
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-25 121.3 117 48.7
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.4e-25 120.9 192 37.0
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.8e-25 120.6 146 40.4
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 1.3e-23 114.4 119 42.9
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.2e-23 113.6 108 45.4
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 1.9e-22 110.5 121 46.3
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 2.5e-22 110.2 95 53.7
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 3.2e-22 109.8 179 32.4
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.2e-21 107.8 120 45.8
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 1.6e-21 107.5 159 40.3
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 2.1e-21 107.1 94 53.2
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 2.1e-21 107.1 92 47.8
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 2.7e-21 106.7 120 45.8
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.7e-21 106.7 95 51.6
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.5e-21 106.3 101 49.5
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 3.5e-21 106.3 120 45.0
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 4.6e-21 105.9 95 50.5
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 4.6e-21 105.9 96 52.1
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 7.9e-21 105.1 95 49.5
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.8e-20 104.0 95 49.5
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.8e-20 104.0 95 49.5
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.3e-20 103.6 96 49.0
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 2.3e-20 103.6 96 49.0
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.3e-20 103.6 95 48.4
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 3.0e-20 103.2 95 49.5
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 3.0e-20 103.2 94 51.1
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 5.1e-20 102.4 108 42.6
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 6.7e-20 102.1 95 49.5
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 8.7e-20 101.7 110 45.5
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 2.5e-19 100.1 93 50.5
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.3e-19 99.8 171 32.2
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 4.3e-19 99.4 104 43.3
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 4.3e-19 99.4 107 43.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 5.7e-19 99.0 120 44.2
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.7e-19 99.0 93 45.2
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.8e-18 96.7 73 57.5
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 2.8e-18 96.7 90 48.9
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 6.3e-18 95.5 117 42.7
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 1.1e-17 94.7 117 41.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.4e-17 93.6 70 58.6
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.1e-17 93.2 84 51.2
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.6e-16 90.1 87 47.1
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 3.4e-16 89.7 180 30.0
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 5.9e-16 89.0 91 46.2
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 8.5e-15 85.1 88 42.0
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.5e-14 82.4 94 43.6
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.5e-14 82.4 94 43.6
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.5e-14 82.4 94 43.6
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.5e-14 82.4 94 43.6
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.5e-14 82.4 94 43.6
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 7.2e-14 82.0 95 41.1
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.6e-13 79.7 70 50.0
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.6e-13 79.7 70 50.0
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.6e-13 79.7 70 50.0
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.6e-13 79.7 70 50.0
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.6e-13 79.7 70 50.0
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 4.6e-13 79.3 86 45.3
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 7.9e-13 78.6 174 29.3
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 5.1e-12 75.9 78 43.6
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 8.8e-12 75.1 124 34.7
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.0e-11 73.9 61 49.2
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 2.5e-11 73.6 71 46.5
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.1e-09 68.2 61 50.8
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-09 67.8 83 41.0
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 1.8e-09 67.4 62 50.0
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 6.9e-09 65.5 62 48.4
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 6.9e-09 65.5 163 25.8
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 3.4e-08 63.2 61 45.9
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 7.7e-08 62.0 61 47.5
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.3e-07 61.2 97 33.0
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 2.9e-07 60.1 53 49.1
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 5.0e-07 59.3 61 44.3
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 2.5e-06 57.0 48 56.2
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 4.2e-06 56.2 72 38.9
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 4.2e-06 56.2 128 28.1
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 5.5e-06 55.8 138 27.5
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.5e-06 55.8 80 35.0
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 7.2e-06 55.5 49 49.0
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 9.4e-06 55.1 53 45.3


User provided reference genes

Program Settings