Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 2.3e-112 409.1 230 100.0
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.0e-79 299.7 176 100.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 4.9e-54 215.3 233 56.2
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.6e-52 210.3 236 57.2
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 3.5e-52 209.1 239 61.1
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 4.6e-52 208.8 234 58.5
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 4.6e-52 208.8 234 55.1
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.8e-52 208.0 235 58.7
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.0e-51 207.6 242 59.1
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.3e-51 207.2 233 56.2
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.3e-51 206.5 236 60.6
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 3.0e-51 206.1 234 55.6
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.9e-51 205.7 235 57.4
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 5.0e-51 205.3 230 55.2
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 8.6e-51 204.5 236 56.8
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.1e-50 204.1 230 55.2
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.1e-50 204.1 236 56.4
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.5e-50 203.8 234 58.5
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.5e-50 203.8 236 58.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.9e-50 203.4 236 57.6
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.5e-50 203.0 230 56.1
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 3.3e-50 202.6 236 55.9
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 4.3e-50 202.2 240 54.2
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.6e-50 201.8 236 55.9
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.6e-50 201.8 236 55.9
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 5.6e-50 201.8 235 57.4
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 5.6e-50 201.8 237 54.9
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 5.6e-50 201.8 232 55.6
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 5.6e-50 201.8 233 53.6
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 5.6e-50 201.8 233 55.4
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 7.3e-50 201.4 236 55.9
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 7.3e-50 201.4 251 52.2
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-49 200.3 236 55.5
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.6e-49 200.3 232 56.9
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 2.1e-49 199.9 233 55.8
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 2.8e-49 199.5 233 55.8
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.8e-49 199.5 236 55.1
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 3.6e-49 199.1 234 59.4
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 8.0e-49 198.0 236 55.9
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 8.0e-49 198.0 236 55.5
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 8.0e-49 198.0 230 52.6
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.1e-48 197.6 235 57.4
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-48 197.6 236 55.1
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-48 197.6 239 56.5
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.1e-48 197.6 239 56.5
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.1e-48 197.6 236 55.1
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.1e-48 197.6 235 57.0
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 1.1e-48 197.6 234 56.8
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.1e-48 197.6 235 55.3
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-48 197.2 236 56.4
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-48 197.2 233 56.2
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.4e-48 197.2 236 56.4
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.8e-48 196.8 240 56.2
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 3.1e-48 196.1 236 56.4
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 3.1e-48 196.1 236 54.7
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 4.0e-48 195.7 236 55.9
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 4.0e-48 195.7 233 56.7
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 4.0e-48 195.7 234 55.1
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 4.0e-48 195.7 234 56.8
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 5.2e-48 195.3 236 56.4
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 5.2e-48 195.3 236 56.4
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 5.2e-48 195.3 236 55.1
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.2e-48 195.3 233 56.7
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 5.2e-48 195.3 233 57.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.8e-48 194.9 235 54.0
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.8e-48 194.9 235 54.9
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 8.9e-48 194.5 235 55.3
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 1.2e-47 194.1 235 55.7
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.2e-47 194.1 235 56.6
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-47 194.1 230 54.8
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.5e-47 193.7 235 57.4
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.5e-47 193.7 235 54.9
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.0e-47 193.4 245 54.7
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.0e-47 193.4 234 54.3
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.6e-47 193.0 233 54.9
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.6e-47 193.0 236 56.4
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 3.4e-47 192.6 235 56.6
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.4e-47 192.6 235 56.6
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 3.4e-47 192.6 235 54.9
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 4.4e-47 192.2 236 54.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 4.4e-47 192.2 239 57.7
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 4.4e-47 192.2 236 55.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 7.5e-47 191.4 242 55.0
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 7.5e-47 191.4 233 53.2
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 7.5e-47 191.4 233 54.1
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 7.5e-47 191.4 233 54.9
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.3e-46 190.7 236 55.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.3e-46 190.7 234 54.7
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.3e-46 190.7 231 55.8
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 1.3e-46 190.7 234 56.8
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.7e-46 190.3 236 54.7
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 1.7e-46 190.3 235 55.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.2e-46 189.9 236 54.7
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 2.9e-46 189.5 235 55.7
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.9e-46 189.5 237 54.9
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 3.7e-46 189.1 236 53.8
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.7e-46 189.1 234 53.8
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.9e-46 188.7 235 54.5
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 8.3e-46 188.0 241 56.8
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.4e-45 187.2 235 53.6
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.4e-45 187.2 233 53.6
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 3.2e-45 186.0 234 56.4
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 3.2e-45 186.0 233 53.6
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 4.1e-45 185.7 234 55.6
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 9.2e-45 184.5 239 54.0
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.2e-44 184.1 235 54.9
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 7.8e-44 181.4 236 53.0
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.0e-43 181.0 232 53.9
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.0e-43 181.0 232 48.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 8.6e-43 177.9 233 48.9
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 3.3e-42 176.0 232 47.0
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 3.3e-42 176.0 233 48.5
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 4.3e-42 175.6 237 53.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.3e-42 175.6 234 47.0
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.3e-42 175.6 230 47.8
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.2e-41 174.1 227 53.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 4.7e-41 172.2 233 51.1
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.7e-41 172.2 233 46.8
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 4.7e-41 172.2 235 51.9
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 8.1e-41 171.4 235 51.9
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.8e-40 170.2 217 57.6
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 6.8e-40 168.3 237 51.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.8e-40 168.3 235 50.2
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.5e-39 167.2 249 45.8
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 7.5e-39 164.9 236 50.8
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 9.9e-39 164.5 230 53.5
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 9.9e-39 164.5 232 50.9
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 9.9e-39 164.5 236 50.4
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 9.9e-39 164.5 236 50.4
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.3e-38 164.1 289 40.1
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.4e-37 159.8 230 51.3
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.4e-37 158.7 230 51.3
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.4e-37 158.7 230 50.9
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 7.1e-37 158.3 234 47.9
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-36 157.1 230 50.9
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.1e-36 156.8 230 44.8
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 3.5e-36 156.0 234 47.9
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 5.6e-34 148.7 237 48.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.1e-32 142.9 234 49.1
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 5.2e-32 142.1 234 49.1
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 9.9e-31 137.9 274 41.6
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.1e-29 134.4 230 41.7
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 5.4e-29 132.1 192 54.7
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-28 129.8 233 45.5
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.3e-26 122.9 185 50.8
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.3e-25 120.9 102 63.7
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.1e-24 117.9 155 55.5
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.9e-24 115.2 230 41.7
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.0e-23 113.6 102 57.8
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 2.6e-23 113.2 98 61.2
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.7e-22 110.5 148 58.8
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 2.2e-22 110.2 150 54.0
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.6e-20 104.0 132 53.0
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.6e-20 102.4 191 46.6
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 6.0e-20 102.1 113 52.2
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-18 97.4 113 49.6
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 5.6e-18 95.5 113 50.4
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-17 94.4 110 50.0
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.6e-17 94.0 95 52.6
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-17 94.0 110 49.1
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 2.1e-17 93.6 75 62.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 6.2e-17 92.0 86 55.8
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-16 90.5 110 48.2
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.8e-16 90.5 81 55.6
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 6.9e-16 88.6 104 50.0
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.9e-14 83.2 62 64.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 3.8e-14 82.8 102 46.1
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 9.3e-13 78.2 88 48.9
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 1.6e-12 77.4 113 44.2
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 4.3e-10 69.3 223 29.6
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.8e-09 65.9 44 70.5
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 4.9e-06 55.8 75 42.7


User provided reference genes

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