Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 1.5e-79 299.7 176 100.0
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.5e-79 299.7 176 100.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.8e-32 143.3 178 52.2
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 2.0e-31 139.8 180 54.4
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 2.6e-31 139.4 181 59.1
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 3.4e-31 139.0 183 59.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 7.6e-31 137.9 179 50.8
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 1.3e-30 137.1 178 55.6
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.2e-30 136.3 187 56.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 4.9e-30 135.2 180 55.6
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.1e-29 134.0 178 52.2
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.4e-29 133.7 186 53.8
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.9e-29 133.3 181 53.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.2e-29 132.5 180 53.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 3.2e-29 132.5 179 50.8
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 4.1e-29 132.1 181 54.1
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 4.1e-29 132.1 175 50.9
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 4.1e-29 132.1 177 50.3
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 5.4e-29 131.7 175 50.9
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 7.1e-29 131.3 178 51.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.6e-28 130.2 179 52.0
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.1e-28 129.8 179 54.7
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 2.1e-28 129.8 175 52.0
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.1e-28 129.8 184 49.5
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-28 129.4 181 51.9
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-28 129.4 181 51.9
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 2.7e-28 129.4 176 51.7
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 3.5e-28 129.0 181 51.4
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 4.6e-28 128.6 178 52.2
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 4.6e-28 128.6 182 50.0
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 6.0e-28 128.3 181 53.0
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 6.0e-28 128.3 178 51.7
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 6.0e-28 128.3 178 54.5
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 7.8e-28 127.9 176 53.4
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 7.8e-28 127.9 196 46.9
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.8e-28 127.9 181 53.6
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 1.0e-27 127.5 181 50.8
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.0e-27 127.5 181 51.9
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-27 127.1 181 50.8
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.3e-27 127.1 184 52.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.3e-27 127.1 184 52.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.3e-27 127.1 181 50.8
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.7e-27 126.7 181 52.5
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 1.7e-27 126.7 178 52.2
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.7e-27 126.7 181 52.5
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 1.7e-27 126.7 178 56.2
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.7e-27 126.7 178 54.5
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 2.3e-27 126.3 181 50.8
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 3.0e-27 125.9 180 53.3
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 3.9e-27 125.6 179 50.3
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 3.9e-27 125.6 181 52.5
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 3.9e-27 125.6 181 50.8
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 5.1e-27 125.2 181 51.9
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 5.1e-27 125.2 148 50.0
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 5.1e-27 125.2 178 51.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 6.6e-27 124.8 181 52.5
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 6.6e-27 124.8 181 52.5
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 6.6e-27 124.8 181 50.3
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 8.7e-27 124.4 177 53.1
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 8.7e-27 124.4 175 46.9
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 8.7e-27 124.4 180 51.1
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-26 124.0 180 51.1
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 1.1e-26 124.0 179 52.0
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 1.1e-26 124.0 180 52.8
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.1e-26 124.0 179 52.5
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 1.5e-26 123.6 190 51.1
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.5e-26 123.6 180 49.4
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 1.5e-26 123.6 178 52.2
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.9e-26 123.2 174 51.1
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 2.5e-26 122.9 179 50.8
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 2.5e-26 122.9 180 50.6
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 4.3e-26 122.1 179 49.7
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 4.3e-26 122.1 180 51.1
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.3e-26 122.1 180 53.3
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 4.3e-26 122.1 179 54.7
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 5.6e-26 121.7 181 49.7
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 5.6e-26 121.7 180 53.3
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.6e-26 121.7 180 53.3
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 7.3e-26 121.3 177 50.8
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.3e-26 121.3 180 53.9
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 7.3e-26 121.3 181 51.4
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 7.3e-26 121.3 187 52.9
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 9.6e-26 120.9 102 63.7
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 9.6e-26 120.9 177 49.2
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 9.6e-26 120.9 177 50.3
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 9.6e-26 120.9 185 51.4
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.2e-25 120.6 184 54.9
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 1.6e-25 120.2 181 49.7
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.6e-25 120.2 181 50.8
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.1e-25 119.8 181 50.8
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 2.1e-25 119.8 177 50.8
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 2.8e-25 119.4 176 51.7
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 2.8e-25 119.4 182 51.1
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 3.6e-25 119.0 178 50.6
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 3.6e-25 119.0 180 51.7
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 4.7e-25 118.6 181 49.2
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 6.2e-25 118.2 180 51.7
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 8.1e-25 117.9 179 52.0
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.4e-24 117.1 180 49.4
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.4e-24 117.1 181 51.4
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.8e-24 116.7 187 52.4
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 3.1e-24 115.9 177 49.2
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.1e-24 115.9 179 49.7
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.0e-24 115.5 177 49.7
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 5.2e-24 115.2 178 48.9
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 9.0e-24 114.4 179 51.4
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 9.0e-24 114.4 180 49.4
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.2e-23 114.0 184 49.5
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.2e-23 114.0 174 43.1
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-23 113.6 102 57.8
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.5e-23 113.6 178 51.7
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 2.0e-23 113.2 98 61.2
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.3e-22 110.5 148 58.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 3.8e-22 109.0 176 49.4
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 6.4e-22 108.2 177 44.1
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.4e-22 108.2 176 42.0
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.4e-21 107.1 173 43.4
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 3.2e-21 105.9 177 41.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 5.4e-21 105.1 179 40.2
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.2e-20 104.0 178 47.8
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.2e-20 104.0 132 53.0
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.6e-20 103.6 178 41.6
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 2.1e-20 103.2 178 40.4
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 3.5e-20 102.4 181 48.1
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 3.5e-20 102.4 171 49.1
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 6.0e-20 101.7 180 46.7
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.7e-19 100.1 178 45.5
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.0e-19 99.4 161 54.0
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 8.7e-19 97.8 182 47.3
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 1.1e-18 97.4 180 46.7
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.5e-18 96.3 181 45.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 5.6e-18 95.1 180 43.9
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 1.3e-17 94.0 95 52.6
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.3e-17 94.0 181 46.4
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 1.6e-17 93.6 75 62.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 4.8e-17 92.0 86 55.8
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 4.8e-17 92.0 100 53.0
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.2e-17 91.7 176 44.9
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 8.1e-17 91.3 181 44.2
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 8.1e-17 91.3 181 44.2
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.1e-16 90.9 64 68.8
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.4e-16 90.5 73 63.0
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.4e-16 90.5 81 55.6
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.8e-16 90.1 174 47.7
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 2.4e-16 89.7 66 66.7
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 2.4e-16 89.7 66 66.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.0e-16 89.0 174 46.6
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.0e-16 89.0 174 46.6
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.3e-16 88.6 104 50.0
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.0e-16 87.8 174 46.6
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-15 87.4 174 38.5
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.6e-15 86.3 174 46.0
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 4.5e-15 85.5 178 41.0
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.2e-14 83.2 62 64.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 2.9e-14 82.8 102 46.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.9e-14 82.8 182 44.0
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 4.9e-14 82.0 178 41.0
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 7.1e-13 78.2 88 48.9
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 9.6e-10 67.8 73 47.9
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 3.4e-07 59.3 137 48.9
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 3.8e-06 55.8 75 42.7


User provided reference genes

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