Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 0.0e+00 1411.7 950 100.0
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 4.6e-114 416.8 954 42.8
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 7.8e-114 416.0 965 32.1
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 1.9e-112 411.4 954 40.4
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 3.3e-112 410.6 951 45.3
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 7.3e-112 409.5 954 41.4
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 2.1e-111 407.9 967 43.0
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.0e-110 405.6 956 41.5
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.0e-110 405.6 956 41.5
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 4.0e-110 403.7 980 40.3
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 3.4e-109 400.6 951 42.3
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.4e-109 400.6 960 42.3
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 3.4e-109 400.6 976 43.3
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 3.7e-108 397.1 953 42.0
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 4.9e-108 396.7 950 42.0
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 4.9e-108 396.7 952 43.4
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 1.4e-107 395.2 950 43.8
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.1e-107 393.7 954 44.9
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 1.2e-106 392.1 950 42.1
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.6e-106 391.7 953 42.7
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 2.7e-106 391.0 950 43.2
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 3.5e-106 390.6 952 42.2
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 4.6e-106 390.2 950 41.3
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 6.0e-106 389.8 966 44.3
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 6.0e-106 389.8 951 43.5
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 7.8e-106 389.4 952 42.4
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 1.3e-105 388.7 953 43.9
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.7e-105 388.3 962 44.0
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 5.0e-105 386.7 950 41.6
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 6.6e-105 386.3 950 41.5
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.9e-104 384.8 952 42.2
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 2.5e-104 384.4 950 43.5
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 3.3e-104 384.0 950 44.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 4.3e-104 383.6 960 42.4
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 7.3e-104 382.9 950 42.3
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 7.3e-104 382.9 989 31.3
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 9.5e-104 382.5 963 42.1
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.2e-103 382.1 963 44.0
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 2.1e-103 381.3 950 41.3
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.8e-103 380.9 950 41.9
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 4.7e-103 380.2 960 42.1
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 6.2e-103 379.8 952 43.7
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 1.4e-102 378.6 955 31.8
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.4e-102 378.6 950 41.9
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 1.4e-102 378.6 954 44.1
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 5.2e-102 376.7 950 42.0
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 5.2e-102 376.7 954 43.2
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 6.8e-102 376.3 950 43.3
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 3.4e-101 374.0 954 42.2
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 3.4e-101 374.0 955 41.5
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 4.4e-101 373.6 951 41.4
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 7.5e-101 372.9 960 42.0
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 9.8e-101 372.5 952 41.7
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.7e-100 371.7 951 42.0
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.7e-100 371.7 960 41.8
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 2.9e-100 370.9 950 42.5
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 2.9e-100 370.9 950 43.1
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.9e-100 370.9 952 42.3
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 6.4e-100 369.8 950 42.4
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.1e-99 369.0 951 41.9
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 1.4e-99 368.6 956 42.8
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 1.4e-99 368.6 950 43.3
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 1.9e-99 368.2 955 42.4
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.4e-99 367.9 953 42.5
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 5.4e-99 366.7 950 42.3
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 7.1e-99 366.3 950 42.0
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 7.1e-99 366.3 682 48.4
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 9.2e-99 365.9 950 42.4
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 9.2e-99 365.9 952 42.1
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.6e-98 365.2 955 43.1
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 2.1e-98 364.8 952 42.1
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 2.7e-98 364.4 960 43.5
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 2.7e-98 364.4 954 43.0
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.5e-98 364.0 952 42.0
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.5e-98 364.0 952 42.1
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 3.5e-98 364.0 951 41.3
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 6.0e-98 363.2 955 41.3
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.0e-98 363.2 951 41.7
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 7.8e-98 362.8 954 42.0
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 2.3e-97 361.3 981 31.5
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.0e-97 360.9 959 40.5
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 3.9e-97 360.5 962 41.1
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.9e-97 360.5 957 41.7
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 3.9e-97 360.5 957 32.3
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 5.1e-97 360.1 960 42.5
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 8.6e-97 359.4 960 42.4
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 2.5e-96 357.8 950 41.6
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 3.3e-96 357.5 950 43.2
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 9.5e-96 355.9 960 41.4
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 9.5e-96 355.9 960 40.8
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 1.2e-95 355.5 960 42.0
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 2.1e-95 354.8 752 45.2
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 2.1e-95 354.8 951 42.5
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 2.1e-95 354.8 961 41.4
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 2.8e-95 354.4 950 41.8
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 3.6e-95 354.0 956 38.4
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 4.7e-95 353.6 949 41.1
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 8.1e-95 352.8 955 40.7
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.4e-94 352.1 952 43.1
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 6.8e-94 349.7 961 42.5
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 8.9e-94 349.4 950 40.3
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 7.6e-93 346.3 778 43.3
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.9e-92 344.4 954 41.2
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 3.8e-92 344.0 961 42.2
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 3.8e-92 344.0 1037 39.4
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.3e-88 330.9 940 42.8
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 3.6e-87 327.4 692 49.1
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 3.6e-87 327.4 952 39.3
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 1.2e-85 322.4 1011 34.7
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 3.4e-85 320.9 931 40.2
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.8e-85 320.1 951 40.6
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 2.4e-83 314.7 963 38.0
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 5.3e-78 297.0 871 41.6
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 3.4e-69 267.7 963 35.4
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 1.9e-48 198.7 386 40.7
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 3.7e-47 194.5 628 27.4
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.0e-41 176.4 555 45.2
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 3.0e-41 174.9 594 26.6
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 1.2e-26 126.3 137 46.0
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 4.0e-25 121.3 132 43.2
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.7e-23 115.9 142 40.1
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 8.0e-18 97.1 96 44.8
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 5.7e-16 90.9 104 46.2
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 5.0e-12 77.8 81 44.4
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 9.5e-11 73.6 81 48.1
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.2e-10 73.2 174 30.5
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 2.3e-09 68.9 73 52.1
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 6.8e-09 67.4 55 63.6
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 6.8e-09 67.4 73 43.8
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 1.5e-08 66.2 79 45.6
PRCOL_00000269 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 8.3e-07 60.5 168 30.4
unitig_62.g23251 Utricularia gibba HOM05D001610 ORTHO05D001585 1.8e-06 59.3 190 24.7
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 2.4e-06 58.9 74 39.2
ATR0157G001 Amborella trichopoda HOM05D000526 ORTHO05D000956 3.1e-06 58.5 121 30.6


User provided reference genes

Program Settings