Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO12G004 Micromonas commoda HOM05D020496 ORTHO05D000897 4.3e-117 424.9 246 100.0
AagrBONN_evm.TU.Sc2ySwM_362.657 Anthoceros agrestis HOM05D020496 ORTHO05D009197 3.6e-15 86.3 268 28.0
PRCOL_00001578 Prasinoderma coloniale HOM05D001394 ORTHO05D001237 6.9e-14 82.0 185 32.4
SEGI_35529 Sequoiadendron giganteum HOM05D007500 ORTHO05D009197 3.3e-08 63.2 185 30.3
Cre03.g193900 Chlamydomonas reinhardtii HOM05D020496 ORTHO05D009197 5.6e-08 62.4 168 25.6
Pp3c17_12030 Physcomitrium patens HOM05D007207 ORTHO05D009041 5.6e-08 62.4 91 36.3
Mapoly0168s0007 Marchantia polymorpha HOM05D007207 ORTHO05D009041 1.3e-07 61.2 78 38.5
CBR_g30333 Chara braunii HOM05D000789 ORTHO05D000897 6.2e-07 58.9 74 40.5
Pp3c13_23370 Physcomitrium patens HOM05D020496 ORTHO05D009197 6.2e-07 58.9 134 32.1
Pp3c13_23373 Physcomitrium patens HOM05D020496 ORTHO05D009197 6.2e-07 58.9 134 32.1
PSO017G0374 Papaver somniferum HOM05D000789 ORTHO05D000897 8.1e-07 58.5 91 39.6
PSO478G0136 Papaver somniferum HOM05D000789 ORTHO05D000897 8.1e-07 58.5 91 39.6
Thecc.04G127800 Theobroma cacao HOM05D000789 ORTHO05D000897 1.1e-06 58.2 76 40.8
TPR.G3904 Trifolium pratense HOM05D000789 ORTHO05D000897 1.4e-06 57.8 91 37.4
CANSAT80G2391 Cannabis sativa HOM05D000789 ORTHO05D000897 1.8e-06 57.4 92 39.1
HanXRQChr08g0236821 Helianthus annuus HOM05D000789 ORTHO05D000897 1.8e-06 57.4 88 38.6
Thhalv10010679m.g Eutrema salsugineum HOM05D000789 ORTHO05D000897 2.4e-06 57.0 89 39.3
Sabra15G0118100 Salix brachista HOM05D000789 ORTHO05D000897 2.4e-06 57.0 93 37.6
Zm00001eb199430 Zea mays HOM05D000789 ORTHO05D000897 2.4e-06 57.0 92 34.8
MSTRG.11275 Avicennia marina HOM05D000789 ORTHO05D000897 3.1e-06 56.6 93 37.6
MSTRG.9330 Avicennia marina HOM05D000789 ORTHO05D000897 3.1e-06 56.6 93 37.6
CARHR277320 Cardamine hirsuta HOM05D000789 ORTHO05D000897 3.1e-06 56.6 92 37.0
Migut.I00537 Erythranthe guttata HOM05D000789 ORTHO05D000897 3.1e-06 56.6 93 37.6
SalBow1G2242 Salvia bowleyana HOM05D000789 ORTHO05D000897 3.1e-06 56.6 93 37.6
SalBow1G5730 Salvia bowleyana HOM05D000789 ORTHO05D000897 3.1e-06 56.6 93 37.6
SGA_v2.0_scaffold5G02863 Striga asiatica HOM05D000789 ORTHO05D000897 3.1e-06 56.6 93 37.6
Atru.chr6.1801 Acer truncatum HOM05D000789 ORTHO05D000897 4.0e-06 56.2 93 37.6
CiPaw.12G043800 Carya illinoinensis HOM05D000789 ORTHO05D000897 4.0e-06 56.2 93 37.6
Ciclev10032646m.g Citrus clementina HOM05D000789 ORTHO05D000897 4.0e-06 56.2 93 37.6
Haze_07147 Corylus avellana HOM05D000789 ORTHO05D000897 4.0e-06 56.2 93 37.6
Duzib268G1108 Durio zibethinus HOM05D000789 ORTHO05D000897 4.0e-06 56.2 90 37.8
Eucgr.H04476 Eucalyptus grandis HOM05D000789 ORTHO05D000897 4.0e-06 56.2 92 34.8
Gohir.A12G190000 Gossypium hirsutum HOM05D000789 ORTHO05D000897 4.0e-06 56.2 92 38.0
MD06G1141200 Malus domestica HOM05D000789 ORTHO05D000897 4.0e-06 56.2 87 37.9
MD14G1156400 Malus domestica HOM05D000789 ORTHO05D000897 4.0e-06 56.2 87 37.9
PSO017G6144 Papaver somniferum HOM05D000789 ORTHO05D000897 4.0e-06 56.2 92 38.0
PSO478G4632 Papaver somniferum HOM05D000789 ORTHO05D000897 4.0e-06 56.2 92 38.0
Potri.012G098500 Populus trichocarpa HOM05D000789 ORTHO05D000897 4.0e-06 56.2 93 37.6
Potri.015G097400 Populus trichocarpa HOM05D000789 ORTHO05D000897 4.0e-06 56.2 93 37.6
Sabra12G0071900 Salix brachista HOM05D000789 ORTHO05D000897 4.0e-06 56.2 93 37.6
Sc04g0000600 Simmondsia chinensis HOM05D000789 ORTHO05D000897 4.0e-06 56.2 91 38.5
MSTRG.22901 Avicennia marina HOM05D000789 ORTHO05D000897 5.3e-06 55.8 93 37.6
EL10Ac5g11403 Beta vulgaris HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
CBR_g34951 Chara braunii HOM05D000789 ORTHO05D000897 5.3e-06 55.8 76 38.2
ClCG06G017930 Citrullus lanatus HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
MELO3C026204.2 Cucumis melo HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
CsaV3_1G000520 Cucumis sativus L. HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
Duzib084G0605 Durio zibethinus HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
Duzib205G0589 Durio zibethinus HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
Thhalv10004831m.g Eutrema salsugineum HOM05D000789 ORTHO05D000897 5.3e-06 55.8 91 38.5
Gohir.D12G192400 Gossypium hirsutum HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
Gorai.008G206700 Gossypium raimondii HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
Manes.06G120200 Manihot esculenta HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
Manes.14G050900 Manihot esculenta HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
Os03g0251350 Oryza sativa ssp. japonica HOM05D000789 ORTHO05D000897 5.3e-06 55.8 95 37.9
Os06g0667100 Oryza sativa ssp. japonica HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 35.9
THA.LOC104818182 Tarenaya hassleriana HOM05D000789 ORTHO05D000897 5.3e-06 55.8 89 38.2
Thecc.03G130100 Theobroma cacao HOM05D000789 ORTHO05D000897 5.3e-06 55.8 92 38.0
TPR.G33162 Trifolium pratense HOM05D000789 ORTHO05D000897 5.3e-06 55.8 76 39.5
unitig_0.g1248 Utricularia gibba HOM05D001512 ORTHO05D001574 5.3e-06 55.8 90 37.8
AagrBONN_evm.TU.Sc2ySwM_228.2356 Anthoceros agrestis HOM05D007207 ORTHO05D009041 6.9e-06 55.5 78 33.3
Carub.0002s0860 Capsella rubella HOM05D000789 ORTHO05D000897 6.9e-06 55.5 93 34.4
CAN.G65.47 Capsicum annuum HOM05D000789 ORTHO05D000897 6.9e-06 55.5 94 35.1
Cfa019405 Carpinus fangiana HOM05D000789 ORTHO05D000897 6.9e-06 55.5 91 35.2
Ciclev10007003m.g Citrus clementina HOM05D000789 ORTHO05D000897 6.9e-06 55.5 91 35.2
Haze_07810 Corylus avellana HOM05D000789 ORTHO05D000897 6.9e-06 55.5 91 35.2
Haze_07811 Corylus avellana HOM05D000789 ORTHO05D000897 6.9e-06 55.5 91 35.2
PSO017G0050 Papaver somniferum HOM05D000789 ORTHO05D000897 6.9e-06 55.5 92 37.0
PSO478G4300 Papaver somniferum HOM05D000789 ORTHO05D000897 6.9e-06 55.5 92 37.0
Zm00001eb389900 Zea mays HOM05D000789 ORTHO05D000897 6.9e-06 55.5 92 34.8
Actinidia23504 Actinidia chinensis HOM05D000789 ORTHO05D000897 9.0e-06 55.1 101 33.7
Actinidia40155 Actinidia chinensis HOM05D000789 ORTHO05D000897 9.0e-06 55.1 101 33.7
ATR0561G072 Amborella trichopoda HOM05D000789 ORTHO05D000897 9.0e-06 55.1 91 36.3
AL5G28040 Arabidopsis lyrata HOM05D000789 ORTHO05D000897 9.0e-06 55.1 90 37.8
AT3G48590 Arabidopsis thaliana HOM05D000789 ORTHO05D000897 9.0e-06 55.1 90 37.8
arahy.Tifrunner.gnm1.ann1.R55U5A Arachis hypogaea HOM05D000789 ORTHO05D000897 9.0e-06 55.1 90 35.6
arahy.Tifrunner.gnm1.ann1.VV7AV3 Arachis hypogaea HOM05D000789 ORTHO05D000897 9.0e-06 55.1 90 35.6
BcaB01g00794 Brassica carinata HOM05D000789 ORTHO05D000897 9.0e-06 55.1 89 38.2
Carub.0005s1478 Capsella rubella HOM05D000789 ORTHO05D000897 9.0e-06 55.1 90 37.8
CAN.G65.39 Capsicum annuum HOM05D000789 ORTHO05D000897 9.0e-06 55.1 94 34.0
CARHR045940 Cardamine hirsuta HOM05D000789 ORTHO05D000897 9.0e-06 55.1 91 34.1
CARHR157380 Cardamine hirsuta HOM05D000789 ORTHO05D000897 9.0e-06 55.1 90 37.8
Duzib068G0355 Durio zibethinus HOM05D000789 ORTHO05D000897 9.0e-06 55.1 92 37.0
Duzib138G0718 Durio zibethinus HOM05D000789 ORTHO05D000897 9.0e-06 55.1 76 39.5
FvH4_5g08391 Fragaria vesca HOM05D000789 ORTHO05D000897 9.0e-06 55.1 89 38.2
FAN08G0116 Fragaria x ananassa HOM05D000789 ORTHO05D000466 9.0e-06 55.1 89 38.2
FAN18G4126 Fragaria x ananassa HOM05D000789 ORTHO05D000897 9.0e-06 55.1 89 38.2
Gohir.D01G084500 Gossypium hirsutum HOM05D000789 ORTHO05D000897 9.0e-06 55.1 90 35.6
Medtr2g023340 Medicago truncatula HOM05D000789 ORTHO05D000897 9.0e-06 55.1 77 39.0
Os08g0496500 Oryza sativa ssp. japonica HOM05D000789 ORTHO05D000897 9.0e-06 55.1 89 32.6
Prupe.5G150400 Prunus persica HOM05D000789 ORTHO05D000897 9.0e-06 55.1 93 36.6
Sp1g41810 Schrenkiella parvula HOM05D000789 ORTHO05D000897 9.0e-06 55.1 91 34.1
SMO364G0582 Selaginella moellendorffii HOM05D000789 ORTHO05D000897 9.0e-06 55.1 76 40.8
THA.LOC104821522 Tarenaya hassleriana HOM05D000789 ORTHO05D000897 9.0e-06 55.1 89 38.2
TWI14G0831 Tripterygium wilfordii HOM05D000789 ORTHO05D000897 9.0e-06 55.1 93 36.6
Zm00001eb010770 Zea mays HOM05D000789 ORTHO05D000897 9.0e-06 55.1 76 40.8


User provided reference genes

Program Settings