Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.2e-65 253.1 128 100.0
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 5.9e-41 171.0 124 66.9
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 1.0e-40 170.2 124 67.7
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 5.0e-40 167.9 124 66.1
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 5.0e-40 167.9 124 66.9
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 5.0e-40 167.9 124 68.5
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.0e-40 167.9 124 68.5
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.0e-40 167.9 124 68.5
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.0e-40 167.9 124 66.9
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.0e-40 167.9 124 66.9
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 6.5e-40 167.5 124 66.1
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 6.5e-40 167.5 124 66.1
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 6.5e-40 167.5 122 67.2
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 6.5e-40 167.5 124 68.5
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 8.5e-40 167.2 124 66.9
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.5e-40 167.2 124 66.1
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 8.5e-40 167.2 124 66.1
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.1e-39 166.8 124 65.3
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-39 166.8 124 66.1
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-39 166.8 124 66.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.1e-39 166.8 124 66.9
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-39 166.4 124 65.3
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-39 166.4 124 65.3
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-39 166.4 124 65.3
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.4e-39 166.4 124 65.3
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.4e-39 166.4 124 66.1
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.4e-39 166.4 124 66.1
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.9e-39 166.0 124 65.3
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-39 166.0 124 65.3
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.9e-39 166.0 124 65.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.9e-39 166.0 124 66.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.9e-39 166.0 124 66.1
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.9e-39 166.0 124 65.3
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 2.5e-39 165.6 124 66.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 2.5e-39 165.6 124 65.3
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 3.2e-39 165.2 124 66.1
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 3.2e-39 165.2 124 66.1
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 4.2e-39 164.9 124 66.1
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 4.2e-39 164.9 124 64.5
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 4.2e-39 164.9 124 64.5
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 4.2e-39 164.9 124 66.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.5e-39 164.5 124 64.5
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 7.2e-39 164.1 124 62.9
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 7.2e-39 164.1 124 62.9
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 7.2e-39 164.1 124 64.5
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 7.2e-39 164.1 124 65.3
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 7.2e-39 164.1 124 65.3
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 7.2e-39 164.1 124 64.5
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 9.4e-39 163.7 126 64.3
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 9.4e-39 163.7 124 64.5
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 1.2e-38 163.3 124 64.5
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.6e-38 162.9 124 63.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.6e-38 162.9 124 64.5
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.6e-38 162.9 124 66.1
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.6e-38 162.9 124 66.1
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.6e-38 162.9 124 65.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.1e-38 162.5 124 66.1
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 2.1e-38 162.5 124 64.5
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 2.7e-38 162.2 124 64.5
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.7e-38 162.2 126 62.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.7e-38 162.2 124 64.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 2.7e-38 162.2 124 65.3
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.7e-38 162.2 122 64.8
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 2.7e-38 162.2 124 64.5
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 3.6e-38 161.8 124 62.9
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 3.6e-38 161.8 124 65.3
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 4.6e-38 161.4 124 63.7
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 4.6e-38 161.4 124 64.5
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 6.1e-38 161.0 124 63.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 7.9e-38 160.6 124 62.9
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 7.9e-38 160.6 124 62.9
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 7.9e-38 160.6 124 63.7
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 1.0e-37 160.2 124 64.5
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.8e-37 159.5 124 63.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.8e-37 159.5 124 62.9
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.8e-37 159.5 124 63.7
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.8e-37 159.5 124 63.7
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.8e-37 159.5 124 63.7
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.8e-37 159.5 124 63.7
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 2.3e-37 159.1 126 66.7
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.3e-37 159.1 124 64.5
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 2.3e-37 159.1 126 61.1
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 3.0e-37 158.7 124 62.9
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 3.0e-37 158.7 124 62.9
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 3.0e-37 158.7 124 62.9
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 3.0e-37 158.7 124 62.9
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 3.0e-37 158.7 124 63.7
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 5.1e-37 157.9 122 62.3
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 6.7e-37 157.5 124 62.9
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 6.7e-37 157.5 124 62.9
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 6.7e-37 157.5 124 62.1
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 6.7e-37 157.5 124 62.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 6.7e-37 157.5 124 62.9
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 6.7e-37 157.5 124 62.9
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 8.8e-37 157.1 124 64.5
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 8.8e-37 157.1 124 62.9
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 8.8e-37 157.1 124 62.9
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.1e-36 156.8 124 62.9
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.1e-36 156.8 124 62.9
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.1e-36 156.8 123 62.6
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.1e-36 156.8 122 62.3
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.5e-36 156.4 124 61.3
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.0e-36 156.0 124 60.5
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.0e-36 156.0 124 60.5
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.0e-36 156.0 124 62.9
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 3.3e-36 155.2 124 62.1
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 4.3e-36 154.8 124 61.3
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 4.3e-36 154.8 124 61.3
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.3e-36 154.8 124 62.1
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 5.7e-36 154.5 124 61.3
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 5.7e-36 154.5 124 61.3
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 5.7e-36 154.5 124 60.5
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 5.7e-36 154.5 124 62.1
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 5.7e-36 154.5 124 61.3
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 5.7e-36 154.5 124 61.3
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 5.7e-36 154.5 124 61.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 7.4e-36 154.1 124 60.5
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 7.4e-36 154.1 124 61.3
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 7.4e-36 154.1 124 62.1
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 9.7e-36 153.7 124 61.3
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 9.7e-36 153.7 122 60.7
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.3e-35 153.3 152 55.3
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.8e-35 152.1 124 60.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 8.2e-35 150.6 124 59.7
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 8.2e-35 150.6 114 65.8
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.8e-34 149.4 140 55.7
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.4e-34 149.1 122 58.2
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 5.3e-34 147.9 124 59.7
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 9.1e-34 147.1 124 59.7
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-33 146.4 124 58.1
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.5e-33 146.4 122 57.4
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.0e-33 146.0 120 60.0
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.0e-33 146.0 122 57.4
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.4e-33 145.2 122 60.7
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 5.9e-33 144.4 122 59.8
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 7.7e-33 144.1 105 66.7
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.7e-32 142.9 105 65.7
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.2e-32 142.5 144 55.6
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.9e-32 142.1 122 57.4
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 3.8e-32 141.7 162 48.8
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 5.0e-32 141.4 124 58.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 5.5e-31 137.9 157 49.0
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.6e-30 135.2 93 73.1
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 6.7e-29 131.0 123 54.5
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 1.3e-27 126.7 122 52.5
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.2e-27 125.9 115 56.5
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 2.8e-27 125.6 122 54.1
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 4.8e-27 124.8 93 65.6
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 6.3e-27 124.4 87 69.0
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 8.2e-27 124.0 124 53.2
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.8e-26 122.9 93 64.5
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.5e-25 118.6 92 62.0
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.5e-24 114.4 95 55.8
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 2.5e-23 112.5 86 62.8
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 3.2e-23 112.1 87 62.1
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.1e-22 107.8 92 55.4
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 9.7e-20 100.5 77 62.3
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 3.7e-19 98.6 78 61.5
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 7.0e-18 94.4 76 59.2
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.9e-15 86.3 66 63.6
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 8.0e-14 80.9 53 75.5
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.0e-13 80.5 55 70.9
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 2.3e-13 79.3 68 58.8
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 2.3e-13 79.3 57 66.7
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 4.0e-13 78.6 52 71.2
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.2e-12 77.0 68 57.4
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.0e-12 76.3 68 57.4
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.4e-12 75.5 125 34.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 6.3e-11 71.2 53 62.3
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.3e-11 71.2 52 63.5
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.1e-10 70.5 53 62.3
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.4e-10 70.1 52 61.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.5e-07 60.1 49 57.1
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 3.6e-06 55.5 36 69.4
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 6.1e-06 54.7 36 66.7
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 8.0e-06 54.3 35 77.1


User provided reference genes

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