Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 1.0e-182 643.3 317 100.0
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 1.8e-22 110.9 216 33.3
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 4.4e-21 106.3 219 33.8
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 3.1e-19 100.1 236 33.5
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 5.4e-19 99.4 232 31.9
CBR_g41172 Chara braunii HOM05D015906 ORTHO05D028597 1.0e-17 95.1 233 29.2
CBR_g41171 Chara braunii HOM05D015906 ORTHO05D028597 3.3e-16 90.1 237 28.7
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.4e-14 84.7 194 35.6
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 1.4e-11 74.7 197 29.4
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.8e-11 74.3 201 28.4
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 2.4e-11 73.9 192 29.2
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 2.4e-11 73.9 184 28.3
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 2.4e-11 73.9 184 28.3
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 3.2e-11 73.6 184 28.3
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 3.2e-11 73.6 184 28.3
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 3.2e-11 73.6 184 28.3
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.2e-11 73.6 197 28.9
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.2e-11 73.6 197 28.9
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.1e-11 73.2 197 28.9
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.4e-11 72.8 168 28.0
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 7.0e-11 72.4 171 28.7
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.2e-11 72.0 168 27.4
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.2e-10 71.6 191 28.3
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 1.6e-10 71.2 184 27.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.6e-10 71.2 197 28.9
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.6e-10 71.2 179 29.1
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.0e-10 70.9 214 26.6
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 2.7e-10 70.5 191 28.8
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 2.7e-10 70.5 173 30.1
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 2.7e-10 70.5 171 31.0
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 3.5e-10 70.1 222 25.2
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 3.5e-10 70.1 184 27.2
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 3.5e-10 70.1 219 27.9
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 3.5e-10 70.1 184 28.8
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.5e-10 70.1 171 28.1
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 5.9e-10 69.3 206 26.7
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 5.9e-10 69.3 173 28.9
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 7.8e-10 68.9 171 28.7
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 7.8e-10 68.9 184 27.2
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.0e-09 68.6 176 29.5
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 1.0e-09 68.6 173 31.2
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.3e-09 68.2 86 43.0
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 1.3e-09 68.2 170 30.0
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.3e-09 68.2 171 29.8
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.3e-09 68.2 171 29.2
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.7e-09 67.8 189 28.0
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 1.7e-09 67.8 170 27.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 2.3e-09 67.4 171 29.2
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.3e-09 67.4 170 27.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 3.0e-09 67.0 171 29.8
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 3.9e-09 66.6 169 27.8
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.9e-09 66.6 169 29.0
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 3.9e-09 66.6 167 30.5
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 3.9e-09 66.6 96 36.5
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 5.0e-09 66.2 166 29.5
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 5.0e-09 66.2 170 28.8
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 5.0e-09 66.2 95 37.9
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.0e-09 66.2 205 26.3
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 5.0e-09 66.2 183 27.3
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 6.6e-09 65.9 171 29.2
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 6.6e-09 65.9 190 26.8
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 6.6e-09 65.9 202 28.2
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.6e-09 65.9 171 28.1
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 8.6e-09 65.5 166 29.5
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 8.6e-09 65.5 170 27.6
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 8.6e-09 65.5 205 26.3
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 8.6e-09 65.5 167 29.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 1.1e-08 65.1 173 28.9
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 1.1e-08 65.1 173 28.9
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.5e-08 64.7 170 28.2
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.5e-08 64.7 171 28.7
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.9e-08 64.3 183 26.2
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.9e-08 64.3 179 26.3
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.9e-08 64.3 191 27.7
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 1.9e-08 64.3 172 27.9
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 1.9e-08 64.3 168 28.0
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 2.5e-08 63.9 169 27.2
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.5e-08 63.9 167 28.7
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 2.5e-08 63.9 167 28.7
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 2.5e-08 63.9 89 38.2
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.5e-08 63.9 172 28.5
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.5e-08 63.9 171 28.1
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 2.5e-08 63.9 172 30.8
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 3.3e-08 63.5 173 28.3
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.3e-08 63.5 171 28.7
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.3e-08 63.2 167 28.1
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 4.3e-08 63.2 172 30.2
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 4.3e-08 63.2 172 27.3
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 4.3e-08 63.2 168 27.4
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 4.3e-08 63.2 171 27.5
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 5.6e-08 62.8 167 28.7
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.6e-08 62.8 230 25.2
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 7.3e-08 62.4 167 27.5
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 7.3e-08 62.4 173 27.7
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 9.5e-08 62.0 171 27.5
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 9.5e-08 62.0 174 27.6
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 9.5e-08 62.0 173 27.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 9.5e-08 62.0 173 27.7
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 9.5e-08 62.0 171 27.5
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 9.5e-08 62.0 172 26.7
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 9.5e-08 62.0 179 25.7
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 9.5e-08 62.0 167 28.1
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.2e-07 61.6 174 27.0
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 1.2e-07 61.6 168 28.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.6e-07 61.2 95 33.7
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 2.8e-07 60.5 86 37.2
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.8e-07 60.5 172 28.5
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.6e-07 60.1 86 34.9
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.7e-07 59.7 91 34.1
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 4.7e-07 59.7 91 34.1
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.7e-07 59.7 178 28.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 6.2e-07 59.3 172 25.0
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 8.0e-07 58.9 119 29.4
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 8.0e-07 58.9 119 29.4
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.1e-06 58.5 86 36.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-06 58.2 167 26.3
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.8e-06 57.8 171 27.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 4.0e-06 56.6 232 23.7
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 5.2e-06 56.2 86 34.9
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 5.2e-06 56.2 172 26.7
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 5.2e-06 56.2 232 22.8
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 8.9e-06 55.5 81 37.0
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.9e-06 55.5 171 24.6


User provided reference genes

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