Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G617 Micromonas commoda HOM05D007086 ORTHO05D008927 4.0e-37 157.5 76 100.0
CBR_g51826 Chara braunii HOM05D007086 ORTHO05D008927 3.2e-10 68.2 68 41.2
Prupe.5G081100 Prunus persica HOM05D007086 ORTHO05D008927 1.2e-09 66.2 70 38.6
Mapoly0088s0021 Marchantia polymorpha HOM05D007086 ORTHO05D008927 1.6e-09 65.9 69 40.6
Carub.0001s1205 Capsella rubella HOM05D007086 ORTHO05D008927 2.1e-09 65.5 70 37.1
AL1G23730 Arabidopsis lyrata HOM05D007086 ORTHO05D008927 2.7e-09 65.1 70 37.1
FAN08G0246 Fragaria x ananassa HOM05D007086 ORTHO05D008927 2.7e-09 65.1 70 40.0
AT1G12400 Arabidopsis thaliana HOM05D007086 ORTHO05D008927 3.5e-09 64.7 70 35.7
MD04G1245800 Malus domestica HOM05D007086 ORTHO05D008927 3.5e-09 64.7 70 40.0
MD12G1192500 Malus domestica HOM05D007086 ORTHO05D008927 3.5e-09 64.7 70 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2353 Anthoceros agrestis HOM05D002603 ORTHO05D008927 4.6e-09 64.3 69 37.7
Rhsim07G0100800 Rhododendron simsii HOM05D007086 ORTHO05D008927 6.0e-09 63.9 69 37.7
CSS0011774 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 7.8e-09 63.5 69 36.2
CSS0048716 Camellia sinensis var. sinensis HOM05D007086 ORTHO05D008927 7.8e-09 63.5 69 36.2
Hma1.2p1_0367F.1_g137100 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 7.8e-09 63.5 70 35.7
Hma1.2p1_3825F.1_g337656 Hydrangea macrophylla HOM05D007086 ORTHO05D008927 7.8e-09 63.5 70 35.7
RcHm_v2.0_Chr7g0201071 Rosa chinensis HOM05D007086 ORTHO05D008927 7.8e-09 63.5 70 38.6
EL10Ac7g17105 Beta vulgaris HOM05D007086 ORTHO05D008927 1.0e-08 63.2 69 37.7
Sed0003691 Sechium edule HOM05D007086 ORTHO05D008927 1.0e-08 63.2 70 38.6
Aa31LG1G2230 Aethionema arabicum HOM05D007086 ORTHO05D008927 1.3e-08 62.8 70 35.7
CANSAT21G1174 Cannabis sativa HOM05D007086 ORTHO05D008927 1.3e-08 62.8 69 39.1
Os07g0573600 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.3e-08 62.8 70 32.9
QL12p015352 Quercus lobata HOM05D007086 ORTHO05D008927 1.3e-08 62.8 69 39.1
Os05g0198700 Oryza sativa ssp. japonica HOM05D007086 ORTHO05D008927 1.7e-08 62.4 70 32.9
Prupe.5G081200 Prunus persica HOM05D007086 ORTHO05D008927 1.7e-08 62.4 64 40.6
Thecc.03G263200 Theobroma cacao HOM05D007086 ORTHO05D008927 1.7e-08 62.4 70 35.7
Rhsim02G0196200 Rhododendron simsii HOM05D007086 ORTHO05D008927 2.3e-08 62.0 64 42.2
GSVIVG01019940001 Vitis vinifera HOM05D007086 ORTHO05D008927 2.3e-08 62.0 69 36.2
Atru.chr9.1458 Acer truncatum HOM05D007086 ORTHO05D008927 3.0e-08 61.6 69 37.7
Cpa.g.sc29.74 Carica papaya HOM05D007086 ORTHO05D008927 3.0e-08 61.6 70 35.7
Eucgr.E00483 Eucalyptus grandis HOM05D007086 ORTHO05D008927 3.0e-08 61.6 70 37.1
Thhalv10009271m.g Eutrema salsugineum HOM05D007086 ORTHO05D008927 3.0e-08 61.6 70 35.7
Glyma.05G239900 Glycine max HOM05D007086 ORTHO05D008927 3.0e-08 61.6 69 36.2
Lalb_Chr05g0222151 Lupinus albus HOM05D007086 ORTHO05D008927 3.0e-08 61.6 69 36.2
Medtr5g055890 Medicago truncatula HOM05D007086 ORTHO05D008927 3.0e-08 61.6 70 35.7
Sp1g11000 Schrenkiella parvula HOM05D007086 ORTHO05D008927 3.0e-08 61.6 70 35.7
Cfa012029 Carpinus fangiana HOM05D007086 ORTHO05D008927 3.9e-08 61.2 69 37.7
Phvul.009G128900 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 3.9e-08 61.2 70 35.7
THA.LOC104809439 Tarenaya hassleriana HOM05D007086 ORTHO05D008927 3.9e-08 61.2 70 34.3
Glyma.08G047000 Glycine max HOM05D007086 ORTHO05D008927 5.1e-08 60.8 69 36.2
Potri.001G116000 Populus trichocarpa HOM05D007086 ORTHO05D008927 5.1e-08 60.8 70 34.3
Actinidia05249 Actinidia chinensis HOM05D001611 ORTHO05D001464 6.6e-08 60.5 69 37.7
BcaB03g13189 Brassica carinata HOM05D007086 ORTHO05D008927 6.6e-08 60.5 70 35.7
BolC5t29822H Brassica oleracea HOM05D007086 ORTHO05D008927 6.6e-08 60.5 70 35.7
BraA06t24109Z Brassica rapa HOM05D007086 ORTHO05D008927 6.6e-08 60.5 70 35.7
CDE11G0364 Ceratophyllum demersum HOM05D007086 ORTHO05D008927 6.6e-08 60.5 69 36.2
Manes.02G032611 Manihot esculenta HOM05D007086 ORTHO05D008927 6.6e-08 60.5 69 36.2
Lj4g0021147 Lotus japonicus HOM05D007086 ORTHO05D008927 8.7e-08 60.1 69 34.8
Sabra01G0089100 Salix brachista HOM05D007086 ORTHO05D008927 8.7e-08 60.1 70 34.3
BolC8t49170H Brassica oleracea HOM05D007086 ORTHO05D008927 1.1e-07 59.7 70 35.7
CiPaw.11G146300 Carya illinoinensis HOM05D007086 ORTHO05D008927 1.1e-07 59.7 70 37.1
PSO478G4385 Papaver somniferum HOM05D007086 ORTHO05D008927 1.1e-07 59.7 69 36.2
CsaV3_3G003270 Cucumis sativus L. HOM05D007086 ORTHO05D008927 1.5e-07 59.3 70 35.7
PGR031G3010 Punica granatum HOM05D007086 ORTHO05D008927 1.5e-07 59.3 70 35.7
TPR.G38364 Trifolium pratense HOM05D007086 ORTHO05D008927 1.5e-07 59.3 70 34.3
Phvul.002G322200 Phaseolus vulgaris HOM05D007086 ORTHO05D008927 2.5e-07 58.5 69 33.3
ClCG00G001010 Citrullus lanatus HOM05D007086 ORTHO05D008927 4.3e-07 57.8 70 34.3
CARHR012690 Cardamine hirsuta HOM05D007086 ORTHO05D008927 5.6e-07 57.4 69 34.8
FAN18G4230 Fragaria x ananassa HOM05D001611 ORTHO05D001464 7.3e-07 57.0 58 39.7
TWI60G0887 Tripterygium wilfordii HOM05D007086 ORTHO05D008927 7.3e-07 57.0 69 36.2
Gohir.A12G221900 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.2e-06 56.2 70 34.3
Gohir.D12G224400 Gossypium hirsutum HOM05D007086 ORTHO05D008927 1.2e-06 56.2 70 34.3
Gorai.008G240500 Gossypium raimondii HOM05D007086 ORTHO05D008927 1.2e-06 56.2 70 34.3
PSO782G0332 Papaver somniferum HOM05D007086 ORTHO05D008927 1.2e-06 56.2 69 34.8
Sc01g0009150 Simmondsia chinensis HOM05D007086 ORTHO05D008927 1.2e-06 56.2 69 34.8
Rhsim02G0194900 Rhododendron simsii HOM05D007086 ORTHO05D008927 1.6e-06 55.8 58 36.2
Medtr5g055880 Medicago truncatula HOM05D007086 ORTHO05D008927 2.1e-06 55.5 66 33.3
Carub.0002s0211 Capsella rubella HOM05D007086 ORTHO05D008927 2.8e-06 55.1 68 35.3
Nn1g01223 Nelumbo nucifera HOM05D007086 ORTHO05D008927 2.8e-06 55.1 69 34.8
Dinv00491 Davidia involucrata HOM05D007086 ORTHO05D008927 3.6e-06 54.7 69 34.8
Potri.009G138800 Populus trichocarpa HOM05D007086 ORTHO05D008927 4.7e-06 54.3 69 33.3
Pp3c1_34050 Physcomitrium patens HOM05D007086 ORTHO05D008927 6.2e-06 53.9 69 31.9
SalBow6G6939 Salvia bowleyana HOM05D007086 ORTHO05D008927 6.2e-06 53.9 71 32.4


User provided reference genes

Program Settings