Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 0.0e+00 1389.8 732 100.0
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.3e-137 494.6 629 47.7
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.5e-136 491.1 710 43.0
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 6.2e-119 432.6 646 43.7
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 5.8e-117 426.0 491 47.3
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 3.0e-113 413.7 720 40.6
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 1.8e-110 404.4 659 40.2
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 3.1e-110 403.7 654 40.7
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 4.0e-110 403.3 653 40.1
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 4.0e-110 403.3 656 39.8
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 5.2e-110 402.9 676 38.8
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 6.8e-110 402.5 655 38.8
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.2e-109 401.7 702 37.2
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 1.5e-109 401.4 643 40.1
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 3.4e-109 400.2 670 38.8
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.3e-108 398.3 659 39.3
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 1.3e-108 398.3 698 37.8
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 1.7e-108 397.9 681 38.3
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 1.7e-108 397.9 658 39.7
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 2.2e-108 397.5 672 38.7
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 2.9e-108 397.1 688 39.0
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 4.9e-108 396.4 657 39.6
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 4.9e-108 396.4 663 38.5
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 6.4e-108 396.0 663 38.5
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 1.1e-107 395.2 656 39.0
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 1.9e-107 394.4 652 39.3
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 2.4e-107 394.0 656 38.7
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 2.4e-107 394.0 663 38.3
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 5.4e-107 392.9 683 37.8
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 7.1e-107 392.5 658 38.9
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 7.1e-107 392.5 658 39.5
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 9.3e-107 392.1 708 37.0
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 1.2e-106 391.7 708 37.1
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.2e-106 391.7 623 41.7
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 1.6e-106 391.3 681 37.7
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 2.1e-106 391.0 656 38.1
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 2.7e-106 390.6 681 37.7
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 3.5e-106 390.2 662 38.1
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 7.8e-106 389.0 725 36.8
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 1.7e-105 387.9 650 38.6
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 2.3e-105 387.5 657 39.1
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 2.3e-105 387.5 659 38.7
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 3.0e-105 387.1 676 38.8
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 3.9e-105 386.7 657 38.2
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 5.1e-105 386.3 650 38.8
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 6.6e-105 386.0 657 39.1
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 8.7e-105 385.6 657 39.1
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 1.5e-104 384.8 667 36.9
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 1.9e-104 384.4 693 38.0
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 1.9e-104 384.4 658 38.8
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 4.3e-104 383.3 661 38.1
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 5.6e-104 382.9 661 37.8
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 7.3e-104 382.5 682 38.1
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 7.3e-104 382.5 672 37.5
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 7.3e-104 382.5 657 39.4
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 7.3e-104 382.5 679 37.8
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 7.3e-104 382.5 669 38.0
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 1.3e-103 381.7 678 37.9
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 1.3e-103 381.7 678 37.9
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.6e-103 381.3 682 37.5
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 1.6e-103 381.3 667 38.2
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 2.1e-103 380.9 722 37.7
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 2.8e-103 380.6 695 36.8
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 6.2e-103 379.4 721 37.0
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 1.1e-102 378.6 695 37.7
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 1.1e-102 378.6 695 37.7
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 1.4e-102 378.3 702 36.9
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.4e-102 378.3 677 36.9
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 3.1e-102 377.1 655 37.3
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 3.1e-102 377.1 672 37.6
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 9.0e-102 375.6 655 37.9
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 1.2e-101 375.2 651 38.4
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 2.2e-100 370.9 679 37.1
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 2.2e-100 370.9 687 38.0
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 2.9e-100 370.5 675 37.3
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.4e-99 368.2 657 38.4
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 2.4e-99 367.5 665 36.8
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 4.2e-99 366.7 730 35.9
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 5.4e-99 366.3 716 35.2
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.2e-98 365.2 718 35.4
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.2e-98 365.2 718 35.4
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 3.5e-98 363.6 654 37.0
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 6.6e-97 359.4 739 35.2
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 8.7e-97 359.0 657 36.5
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 8.7e-97 359.0 478 43.5
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 5.6e-96 356.3 478 43.5
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.1e-95 354.4 526 42.0
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 2.8e-95 354.0 656 36.7
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 3.6e-95 353.6 636 37.9
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.4e-94 351.7 674 35.6
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 5.8e-93 346.3 714 34.7
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 7.6e-93 345.9 657 37.4
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.4e-92 342.8 534 40.6
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.7e-90 337.4 663 36.7
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.8e-89 334.7 693 34.8
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 6.7e-89 332.8 763 33.9
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.6e-87 328.2 594 37.9
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.2e-85 322.0 478 41.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.1e-83 315.5 564 37.8
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.5e-83 314.3 468 40.4
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 4.6e-82 310.1 522 38.7
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 4.6e-82 310.1 722 33.7
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 2.5e-80 304.3 552 36.6
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 1.4e-78 298.5 532 38.9
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 7.6e-77 292.7 547 36.6
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 6.5e-76 289.7 682 32.7
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 7.2e-75 286.2 408 43.9
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.4e-70 271.9 591 34.9
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 4.1e-70 270.4 418 40.2
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 7.7e-61 239.6 415 38.8
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.4e-59 235.3 414 37.4
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 2.9e-52 211.1 374 36.9
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 3.6e-50 204.1 232 47.8
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 2.4e-46 191.4 293 40.3
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.5e-35 155.6 158 52.5
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 8.0e-34 149.8 169 48.5
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.3e-31 142.5 474 28.1
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 8.9e-25 119.8 348 30.2
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 5.7e-24 117.1 355 29.3
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 4.3e-19 100.9 310 29.7
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 4.4e-16 90.9 107 44.9
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-14 86.3 164 35.4
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 1.9e-11 75.5 166 34.3
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 3.6e-10 71.2 85 44.7
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 4.7e-10 70.9 79 48.1
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.3e-09 68.6 208 28.8
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 2.3e-09 68.6 125 36.0
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.3e-07 62.8 70 45.7
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.4e-06 59.3 63 49.2


User provided reference genes

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