Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.1e-95 352.4 188 100.0
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 4.7e-31 138.7 188 41.5
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 6.2e-31 138.3 188 41.5
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 8.1e-31 137.9 188 41.5
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 8.1e-31 137.9 188 42.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 1.1e-30 137.5 182 44.5
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.1e-30 137.5 188 42.0
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.4e-30 137.1 188 42.6
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.4e-30 137.1 188 42.6
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.4e-30 136.3 188 42.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 3.1e-30 136.0 188 42.0
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 3.1e-30 136.0 188 41.0
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 3.1e-30 136.0 185 42.2
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 3.1e-30 136.0 188 43.1
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 5.2e-30 135.2 188 42.0
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 5.2e-30 135.2 188 42.0
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 5.2e-30 135.2 188 41.5
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 5.2e-30 135.2 188 42.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 5.2e-30 135.2 188 42.0
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.8e-30 134.8 188 42.6
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 6.8e-30 134.8 188 42.0
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 8.9e-30 134.4 188 39.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 8.9e-30 134.4 185 41.1
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 1.2e-29 134.0 182 41.8
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 1.2e-29 134.0 187 41.7
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.2e-29 134.0 188 41.5
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.2e-29 134.0 188 42.0
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.5e-29 133.7 188 42.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.5e-29 133.7 188 41.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.5e-29 133.7 188 42.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.0e-29 133.3 188 41.5
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 2.0e-29 133.3 188 40.4
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 2.0e-29 133.3 189 42.9
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.0e-29 133.3 182 42.9
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 2.6e-29 132.9 188 41.5
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 2.6e-29 132.9 188 41.5
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.6e-29 132.9 188 41.5
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 3.4e-29 132.5 188 40.4
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 3.4e-29 132.5 188 42.0
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.4e-29 132.5 188 42.0
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 4.4e-29 132.1 188 41.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 4.4e-29 132.1 188 41.0
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 4.4e-29 132.1 188 39.9
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 4.4e-29 132.1 188 41.5
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 5.8e-29 131.7 182 42.9
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.8e-29 131.7 188 41.5
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.8e-29 131.7 188 41.0
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 5.8e-29 131.7 188 41.0
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 5.8e-29 131.7 185 40.5
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 7.6e-29 131.3 188 40.4
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 7.6e-29 131.3 182 42.3
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 7.6e-29 131.3 182 42.9
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 7.6e-29 131.3 182 42.9
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 7.6e-29 131.3 188 41.5
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 7.6e-29 131.3 188 41.0
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 7.6e-29 131.3 182 42.9
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 9.9e-29 131.0 188 39.9
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 9.9e-29 131.0 185 40.5
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 9.9e-29 131.0 188 39.9
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.3e-28 130.6 185 40.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.3e-28 130.6 185 40.0
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.3e-28 130.6 188 41.0
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.3e-28 130.6 185 42.2
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.3e-28 130.6 182 42.9
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.3e-28 130.6 185 39.5
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 1.3e-28 130.6 188 41.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.7e-28 130.2 182 40.7
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.7e-28 130.2 185 41.1
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 1.7e-28 130.2 185 42.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 1.7e-28 130.2 182 42.9
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 2.2e-28 129.8 182 40.7
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.2e-28 129.8 188 41.0
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.2e-28 129.8 185 40.5
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.9e-28 129.4 185 41.6
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.9e-28 129.4 188 39.4
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 2.9e-28 129.4 185 41.6
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.8e-28 129.0 188 40.4
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 4.9e-28 128.6 182 41.8
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 4.9e-28 128.6 182 41.2
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 6.4e-28 128.3 181 41.4
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 6.4e-28 128.3 182 42.3
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 6.4e-28 128.3 188 39.4
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 6.4e-28 128.3 185 41.1
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 6.4e-28 128.3 188 39.9
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 8.4e-28 127.9 186 40.3
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 8.4e-28 127.9 185 41.6
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 8.4e-28 127.9 188 41.0
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 1.1e-27 127.5 187 40.1
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-27 127.5 188 39.9
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.9e-27 126.7 188 40.4
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.9e-27 126.7 185 40.0
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.9e-27 126.7 188 41.0
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 2.4e-27 126.3 181 41.4
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.4e-27 126.3 182 40.1
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 3.2e-27 125.9 189 40.7
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.2e-27 125.9 188 38.8
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.2e-27 125.9 186 39.8
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.2e-27 125.9 188 40.4
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.1e-27 125.6 188 39.9
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 4.1e-27 125.6 182 41.2
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 4.1e-27 125.6 182 40.7
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 4.1e-27 125.6 185 38.4
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 7.1e-27 124.8 182 39.0
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 7.1e-27 124.8 185 39.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 7.1e-27 124.8 182 39.6
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.6e-26 123.6 189 39.2
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.1e-26 123.2 188 38.8
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 2.1e-26 123.2 185 37.8
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 2.1e-26 123.2 178 41.6
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.1e-26 123.2 182 39.0
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.7e-26 122.9 188 38.8
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 2.7e-26 122.9 177 42.9
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 3.5e-26 122.5 189 39.7
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 3.5e-26 122.5 188 38.3
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 4.6e-26 122.1 182 40.7
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 4.6e-26 122.1 182 38.5
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 7.8e-26 121.3 185 39.5
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 1.3e-25 120.6 180 41.7
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 1.7e-25 120.2 185 38.4
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 3.0e-25 119.4 182 37.9
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.1e-25 118.6 188 37.8
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 5.1e-25 118.6 182 39.0
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 6.6e-25 118.2 189 38.6
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.5e-24 117.1 187 39.0
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.6e-24 115.2 175 38.9
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.1e-23 113.2 187 40.6
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 6.2e-23 111.7 177 39.5
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.9e-20 102.8 161 37.9
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 2.9e-20 102.8 171 36.8
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 8.4e-20 101.3 182 36.3
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 2.3e-17 93.2 134 38.1
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 4.3e-16 89.0 188 34.6
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 7.3e-16 88.2 139 37.4
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 1.5e-13 80.5 134 33.6
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 2.1e-10 70.1 184 31.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.7e-10 69.7 87 43.7
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.1e-08 64.3 134 35.1
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 8.1e-07 58.2 55 58.2
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.4e-06 56.6 83 37.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 6.9e-06 55.1 55 54.5


User provided reference genes

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