Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 0.0e+00 3174.8 1852 100.0
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 9.1e-18 97.8 506 25.7
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 9.1e-18 97.8 506 25.7
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 1.3e-16 94.0 525 25.1
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 1.7e-16 93.6 471 25.7
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.7e-16 93.6 483 25.5
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 2.9e-16 92.8 613 25.1
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 2.9e-16 92.8 476 25.2
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 5.0e-16 92.0 494 24.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 5.0e-16 92.0 527 24.9
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 1.1e-15 90.9 571 26.1
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 1.5e-15 90.5 494 24.9
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 1.9e-15 90.1 483 25.3
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.9e-15 90.1 483 25.3
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.9e-15 90.1 234 31.6
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 2.5e-15 89.7 529 25.1
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 4.2e-15 89.0 538 25.1
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 5.5e-15 88.6 490 24.7
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 1.6e-14 87.0 543 24.9
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 2.1e-14 86.7 483 24.6
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 2.7e-14 86.3 717 23.8
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 2.7e-14 86.3 592 24.2
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 8.0e-14 84.7 533 24.8
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 8.0e-14 84.7 470 24.3
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 1.0e-13 84.3 482 25.1
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 1.0e-13 84.3 441 24.9
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.0e-13 84.3 188 33.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 1.4e-13 84.0 491 24.6
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 1.4e-13 84.0 481 24.7
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 1.8e-13 83.6 500 23.8
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 1.8e-13 83.6 478 25.7
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 2.3e-13 83.2 436 24.5
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 4.0e-13 82.4 484 24.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 4.0e-13 82.4 469 24.9
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 5.2e-13 82.0 513 25.1
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 5.2e-13 82.0 462 24.2
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 6.8e-13 81.6 602 26.1
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 8.8e-13 81.3 475 24.8
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 1.2e-12 80.9 190 33.2
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 1.2e-12 80.9 468 24.8
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 1.5e-12 80.5 491 24.2
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.5e-12 80.5 480 23.5
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 1.5e-12 80.5 251 30.7
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 2.0e-12 80.1 447 24.2
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 2.0e-12 80.1 473 24.7
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.0e-12 80.1 180 33.9
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 2.6e-12 79.7 473 24.7
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 4.4e-12 79.0 597 23.6
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 4.4e-12 79.0 462 23.6
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 4.4e-12 79.0 462 23.6
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 5.7e-12 78.6 461 23.4
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 5.7e-12 78.6 501 23.2
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 9.8e-12 77.8 429 23.3
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 9.8e-12 77.8 415 24.6
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 9.8e-12 77.8 530 25.1
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 1.3e-11 77.4 506 22.9
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 1.7e-11 77.0 423 25.8
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 2.2e-11 76.6 458 24.7
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 2.2e-11 76.6 415 24.3
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 6.3e-11 75.1 482 23.0
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 6.3e-11 75.1 644 24.2
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 6.3e-11 75.1 598 23.7
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 1.1e-10 74.3 463 23.8
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.1e-10 74.3 195 30.8
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 1.1e-10 74.3 415 24.1
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 1.1e-10 74.3 459 22.9
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 1.1e-10 74.3 467 23.6
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 1.4e-10 73.9 462 23.4
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 1.4e-10 73.9 639 22.8
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 1.4e-10 73.9 452 23.9
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 1.4e-10 73.9 409 24.4
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 2.4e-10 73.2 535 23.4
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 2.4e-10 73.2 481 23.9
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 3.1e-10 72.8 228 27.6
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 3.1e-10 72.8 491 24.6
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 4.1e-10 72.4 206 29.6
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 7.0e-10 71.6 484 24.6
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 1.2e-09 70.9 585 23.1
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 1.2e-09 70.9 240 27.9
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 1.6e-09 70.5 431 23.4
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 2.0e-09 70.1 479 24.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 2.7e-09 69.7 444 23.4
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 3.5e-09 69.3 508 22.6
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 4.5e-09 68.9 617 23.8
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 4.5e-09 68.9 479 23.8
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 5.9e-09 68.6 179 31.8
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 7.7e-09 68.2 631 26.5
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 1.1e-07 64.3 398 23.1
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 2.5e-07 63.2 511 22.1
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 3.3e-07 62.8 519 23.3
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 3.3e-07 62.8 504 23.4
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 7.2e-07 61.6 551 23.2
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 3.6e-06 59.3 417 23.3


User provided reference genes

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