Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 3.1e-90 335.1 167 100.0
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 6.1e-38 161.4 150 56.7
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 3.9e-37 158.7 152 53.9
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 4.8e-35 151.8 150 49.3
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 6.3e-35 151.4 159 50.3
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 4.1e-34 148.7 153 51.0
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 5.3e-34 148.3 150 50.7
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 5.3e-34 148.3 153 49.7
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 6.9e-34 147.9 153 49.7
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 6.9e-34 147.9 152 48.7
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 1.2e-33 147.1 151 50.3
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.0e-33 146.4 165 44.2
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 2.0e-33 146.4 161 46.0
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.6e-33 146.0 152 50.0
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 2.6e-33 146.0 154 48.7
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.4e-33 145.6 151 49.7
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 4.5e-33 145.2 152 50.0
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 4.5e-33 145.2 152 48.0
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 4.5e-33 145.2 150 49.3
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 5.9e-33 144.8 152 50.0
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.9e-33 144.8 152 50.0
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 5.9e-33 144.8 150 48.0
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 7.7e-33 144.4 153 49.7
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 7.7e-33 144.4 153 49.0
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.3e-32 143.7 153 48.4
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 1.3e-32 143.7 150 47.3
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 1.7e-32 143.3 150 46.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.7e-32 143.3 150 48.7
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 2.2e-32 142.9 150 49.3
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 2.2e-32 142.9 152 47.4
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 2.2e-32 142.9 150 48.0
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 2.2e-32 142.9 150 48.7
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 2.2e-32 142.9 150 48.0
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 2.2e-32 142.9 153 48.4
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 2.9e-32 142.5 150 48.0
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 2.9e-32 142.5 150 47.3
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 6.5e-32 141.4 152 46.7
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 8.5e-32 141.0 152 48.0
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.1e-31 140.6 150 47.3
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 1.1e-31 140.6 151 47.7
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 1.1e-31 140.6 153 47.1
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.4e-31 140.2 153 48.4
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 1.9e-31 139.8 151 46.4
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.9e-31 139.8 150 48.0
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 2.5e-31 139.4 150 48.0
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.5e-31 139.4 160 46.9
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 2.5e-31 139.4 152 47.4
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 3.2e-31 139.0 152 49.3
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 3.2e-31 139.0 155 45.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 3.2e-31 139.0 150 47.3
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 3.2e-31 139.0 152 46.7
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 3.2e-31 139.0 150 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 4.2e-31 138.7 151 47.7
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 4.2e-31 138.7 150 46.7
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 4.2e-31 138.7 165 46.1
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 4.2e-31 138.7 150 47.3
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 5.5e-31 138.3 150 47.3
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 5.5e-31 138.3 147 49.7
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 5.5e-31 138.3 150 47.3
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 7.2e-31 137.9 147 48.3
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 7.2e-31 137.9 156 46.8
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 9.4e-31 137.5 163 45.4
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 9.4e-31 137.5 152 45.4
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.2e-30 137.1 150 46.7
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 1.6e-30 136.7 147 47.6
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 2.1e-30 136.3 151 46.4
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 2.1e-30 136.3 150 47.3
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 2.1e-30 136.3 147 49.0
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 2.7e-30 136.0 164 45.7
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 3.6e-30 135.6 144 50.7
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 3.6e-30 135.6 147 51.7
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 4.7e-30 135.2 154 50.0
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 6.1e-30 134.8 150 47.3
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 1.0e-29 134.0 153 45.8
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.8e-29 133.3 175 40.6
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.8e-29 133.3 150 50.0
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.1e-29 131.7 152 45.4
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.8e-29 131.0 157 45.9
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 8.8e-29 131.0 157 45.9
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 8.8e-29 131.0 150 45.3
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 2.0e-28 129.8 147 45.6
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 3.3e-28 129.0 149 45.6
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 4.4e-28 128.6 152 45.4
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 5.7e-28 128.3 147 44.2
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.7e-27 126.7 157 44.6
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.1e-26 124.0 145 46.9
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.4e-26 122.9 195 37.9
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 5.3e-26 121.7 157 43.9
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 6.9e-26 121.3 153 43.8
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.5e-25 120.2 161 42.9
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 3.4e-25 119.0 152 44.1
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 5.9e-25 118.2 147 45.6
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 5.9e-25 118.2 155 43.2
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 7.7e-25 117.9 161 40.4
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.3e-24 117.1 157 42.7
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.3e-24 117.1 147 44.9
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.7e-24 116.7 152 42.1
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 5.0e-24 115.2 147 44.2
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 5.0e-24 115.2 147 44.2
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 5.0e-24 115.2 147 44.2
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 8.5e-24 114.4 157 42.0
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 8.5e-24 114.4 162 41.4
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 4.2e-23 112.1 155 40.6
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.2e-22 110.5 150 41.3
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 4.7e-22 108.6 152 40.8
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.0e-16 90.9 152 37.5
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 3.6e-14 82.4 150 36.0
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.0e-13 80.9 150 35.3
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 8.2e-11 71.2 63 60.3


User provided reference genes

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