Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 5.6e-217 757.3 374 100.0
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 7.7e-142 507.7 345 70.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 6.1e-139 498.0 361 66.8
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.4e-137 492.3 343 68.2
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 9.1e-135 484.2 341 69.5
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 9.1e-135 484.2 344 67.2
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 9.1e-135 484.2 350 67.7
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.2e-134 483.8 338 68.6
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 5.9e-134 481.5 337 68.2
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 7.7e-134 481.1 339 67.8
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.3e-133 480.3 339 67.8
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 1.7e-133 479.9 339 67.6
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 1.7e-133 479.9 369 64.5
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.3e-133 479.6 339 67.6
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 2.9e-133 479.2 342 67.5
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.9e-133 479.2 341 67.2
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.9e-133 479.2 340 67.6
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.9e-133 479.2 362 64.6
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.9e-133 479.2 345 67.0
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 3.8e-133 478.8 361 65.4
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 6.6e-133 478.0 364 65.7
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 6.6e-133 478.0 342 67.3
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 6.6e-133 478.0 342 67.3
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 6.6e-133 478.0 341 67.4
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 8.6e-133 477.6 351 66.1
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-132 477.2 341 67.2
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.1e-132 477.2 362 64.9
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.5e-132 476.9 341 66.9
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.5e-132 476.9 370 64.1
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 1.5e-132 476.9 347 66.9
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 1.5e-132 476.9 340 67.9
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.5e-132 476.9 342 67.3
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.5e-132 476.1 350 67.4
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 2.5e-132 476.1 342 68.1
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 3.3e-132 475.7 341 67.7
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 3.3e-132 475.7 351 66.1
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 3.3e-132 475.7 336 68.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 4.2e-132 475.3 350 66.9
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 4.2e-132 475.3 351 67.5
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.2e-132 475.3 369 63.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.2e-132 475.3 307 73.6
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 9.5e-132 474.2 336 67.9
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.2e-131 473.8 383 63.4
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.2e-131 473.8 336 67.6
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.1e-131 473.0 369 64.0
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 2.1e-131 473.0 345 67.2
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.1e-131 473.0 380 61.3
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 2.1e-131 473.0 344 66.3
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 2.8e-131 472.6 339 67.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.6e-131 472.2 337 67.4
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 4.7e-131 471.9 380 62.1
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 4.7e-131 471.9 351 67.0
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 6.1e-131 471.5 375 62.7
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 6.1e-131 471.5 379 62.0
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 6.1e-131 471.5 379 62.3
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.1e-131 471.5 387 63.8
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 6.1e-131 471.5 337 68.0
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 8.0e-131 471.1 349 66.2
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 8.0e-131 471.1 362 64.9
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.0e-130 470.7 343 65.6
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.0e-130 470.7 336 67.3
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 1.8e-130 469.9 337 68.2
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.8e-130 469.9 339 67.0
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.3e-130 469.5 350 66.3
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.3e-130 469.5 341 67.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 2.3e-130 469.5 343 66.5
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.0e-130 469.2 342 67.0
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 5.2e-130 468.4 376 63.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 6.8e-130 468.0 350 65.4
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 6.8e-130 468.0 350 66.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 6.8e-130 468.0 341 66.0
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 6.8e-130 468.0 384 62.5
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 6.8e-130 468.0 372 64.0
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.2e-129 467.2 343 66.5
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 1.2e-129 467.2 336 67.9
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 1.2e-129 467.2 361 64.5
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.5e-129 466.8 354 65.5
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 1.5e-129 466.8 338 66.6
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.0e-129 466.5 344 65.7
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 2.6e-129 466.1 345 65.8
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.6e-129 466.1 384 62.8
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 2.6e-129 466.1 348 65.8
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.6e-129 466.1 351 65.2
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.4e-129 465.3 383 62.4
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 4.4e-129 465.3 378 63.0
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 5.7e-129 464.9 343 65.9
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 5.7e-129 464.9 365 64.7
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 5.7e-129 464.9 374 61.5
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 9.8e-129 464.2 335 67.2
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 9.8e-129 464.2 339 65.8
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 9.8e-129 464.2 382 62.6
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.3e-128 463.8 368 63.3
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.3e-128 463.8 383 62.1
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.7e-128 463.4 337 66.5
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.7e-128 463.4 382 62.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.7e-128 463.4 348 65.5
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 2.2e-128 463.0 384 60.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 3.7e-128 462.2 374 62.6
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.1e-127 459.1 365 63.8
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.4e-127 458.4 342 65.2
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 1.2e-126 457.2 337 66.8
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.5e-126 455.7 390 60.5
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.5e-126 455.7 302 69.2
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 5.9e-126 454.9 339 64.9
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.0e-125 454.1 345 64.9
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.3e-125 453.8 343 63.6
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 2.9e-125 452.6 367 62.7
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 8.6e-125 451.1 339 65.5
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.1e-124 450.7 315 68.6
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-123 447.2 301 69.4
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.2e-123 447.2 313 68.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 6.1e-123 444.9 346 65.9
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.8e-122 443.4 317 68.1
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 3.0e-122 442.6 400 57.8
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 4.0e-122 442.2 320 65.6
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 6.8e-122 441.4 308 68.5
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.4e-121 439.1 351 62.7
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 7.3e-116 421.4 344 59.9
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 2.1e-115 419.9 350 61.7
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.1e-114 417.5 380 59.2
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 1.2e-113 414.1 380 55.8
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 1.1e-108 397.5 496 45.6
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 4.0e-106 389.0 549 41.7
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.2e-106 388.7 322 58.4
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.9e-103 380.2 548 43.1
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 4.3e-100 369.0 281 63.0
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.8e-99 366.3 243 68.3
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 2.0e-97 360.1 349 54.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 2.2e-96 356.7 376 53.2
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 9.9e-89 331.3 253 66.0
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.4e-87 327.4 259 63.7
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 9.3e-87 324.7 288 54.9
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 4.9e-80 302.4 213 68.5
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-73 281.2 213 65.7
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.1e-71 274.6 212 60.8
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 7.1e-71 271.9 200 65.0
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 4.5e-65 252.7 314 44.3
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 9.3e-63 245.0 321 41.4
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.0e-62 242.3 352 39.5
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.3e-61 241.1 321 40.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.3e-61 241.1 340 38.5
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.3e-61 240.4 184 65.8
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.8e-58 230.7 311 41.2
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 5.3e-50 202.6 335 37.9
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 4.2e-47 193.0 127 69.3
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 2.7e-46 190.3 248 39.9
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.0e-37 161.8 113 70.8
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.8e-37 161.0 177 51.4
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.7e-27 127.9 153 47.7
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-18 98.6 92 56.5
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 1.1e-18 98.6 53 77.4
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.8e-14 84.0 45 75.6
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 3.0e-13 80.5 62 69.4
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 4.9e-11 73.2 93 49.5
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 2.9e-08 63.9 38 71.1
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 6.6e-08 62.8 48 54.2
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 4.7e-06 56.6 30 76.7


User provided reference genes

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