Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 5.7e-80 300.8 149 100.0
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 5.8e-24 114.8 116 46.6
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 2.2e-23 112.8 116 44.8
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 2.2e-23 112.8 116 45.7
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 2.9e-23 112.5 116 44.8
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 2.9e-23 112.5 117 43.6
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 3.8e-23 112.1 116 44.8
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 3.8e-23 112.1 119 42.9
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 4.9e-23 111.7 116 44.0
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 4.9e-23 111.7 116 44.0
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 4.9e-23 111.7 116 44.0
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 4.9e-23 111.7 116 44.8
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 6.4e-23 111.3 116 44.0
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 8.4e-23 110.9 119 43.7
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 8.4e-23 110.9 116 44.0
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-22 110.5 116 44.0
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.1e-22 110.5 116 44.0
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 1.1e-22 110.5 116 44.0
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 1.1e-22 110.5 116 44.0
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.1e-22 110.5 116 44.8
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.4e-22 110.2 116 44.0
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.4e-22 110.2 116 43.1
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 1.4e-22 110.2 116 43.1
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 1.4e-22 110.2 116 45.7
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.9e-22 109.8 116 44.0
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 1.9e-22 109.8 116 44.0
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 1.9e-22 109.8 116 44.0
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 1.9e-22 109.8 116 44.8
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-22 109.8 116 44.8
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-22 109.8 116 44.8
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-22 109.8 116 44.8
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 2.4e-22 109.4 117 43.6
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 2.4e-22 109.4 116 42.2
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 3.2e-22 109.0 112 43.8
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 3.2e-22 109.0 116 44.0
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 3.2e-22 109.0 116 44.0
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 3.2e-22 109.0 116 43.1
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 4.2e-22 108.6 116 42.2
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 4.2e-22 108.6 116 44.0
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 4.2e-22 108.6 116 42.2
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 4.2e-22 108.6 116 42.2
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 4.2e-22 108.6 116 44.8
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 5.4e-22 108.2 116 42.2
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 5.4e-22 108.2 117 41.9
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 5.4e-22 108.2 117 41.9
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 5.4e-22 108.2 116 43.1
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 7.1e-22 107.8 116 42.2
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 7.1e-22 107.8 116 43.1
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 7.1e-22 107.8 116 43.1
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 7.1e-22 107.8 116 43.1
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 7.1e-22 107.8 116 43.1
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 7.1e-22 107.8 120 40.8
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 9.3e-22 107.5 116 43.1
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.2e-21 107.1 116 42.2
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.2e-21 107.1 116 42.2
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.2e-21 107.1 116 43.1
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.2e-21 107.1 114 43.9
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 1.2e-21 107.1 116 42.2
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.6e-21 106.7 118 43.2
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.6e-21 106.7 116 44.0
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.6e-21 106.7 116 42.2
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 1.6e-21 106.7 116 43.1
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.1e-21 106.3 114 44.7
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 2.7e-21 105.9 114 42.1
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 2.7e-21 105.9 112 42.0
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 2.7e-21 105.9 116 43.1
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 2.7e-21 105.9 116 40.5
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 2.7e-21 105.9 116 43.1
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 2.7e-21 105.9 112 44.6
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 3.5e-21 105.5 116 41.4
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 6.0e-21 104.8 117 41.0
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 7.8e-21 104.4 115 40.0
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 1.0e-20 104.0 116 40.5
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.0e-20 104.0 116 40.5
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 1.3e-20 103.6 116 42.2
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 1.7e-20 103.2 107 43.9
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.7e-20 103.2 116 38.8
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 2.3e-20 102.8 116 42.2
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.3e-20 102.8 115 40.0
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 2.3e-20 102.8 115 38.3
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 2.3e-20 102.8 115 38.3
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 2.3e-20 102.8 115 38.3
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 3.0e-20 102.4 115 40.0
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 3.9e-20 102.1 116 39.7
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 3.9e-20 102.1 114 43.0
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 3.9e-20 102.1 114 41.2
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 3.9e-20 102.1 116 40.5
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 5.1e-20 101.7 118 39.0
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 5.1e-20 101.7 116 39.7
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 5.1e-20 101.7 121 39.7
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 8.7e-20 100.9 122 39.3
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 8.7e-20 100.9 116 41.4
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.1e-19 100.5 120 39.2
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.1e-19 100.5 114 43.9
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.1e-19 100.5 114 40.4
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.1e-19 100.5 116 39.7
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.5e-19 100.1 114 38.6
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.9e-19 99.8 115 39.1
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 2.5e-19 99.4 111 42.3
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 5.6e-19 98.2 119 37.8
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 7.3e-19 97.8 115 38.3
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.3e-18 97.1 141 36.2
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 1.3e-18 97.1 101 44.6
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.6e-18 96.7 113 41.6
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 2.1e-18 96.3 114 40.4
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 2.8e-18 95.9 112 42.0
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 6.2e-18 94.7 140 37.9
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.4e-17 93.6 114 36.8
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 3.1e-17 92.4 113 39.8
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 5.3e-17 91.7 112 38.4
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 3.8e-15 85.5 123 33.3
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 8.4e-15 84.3 87 41.4
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 3.2e-14 82.4 117 36.8
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.5e-11 72.8 80 42.5
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 1.8e-09 66.6 80 40.0
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 1.8e-09 66.6 78 43.6
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.5e-08 63.5 82 36.6
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.3e-07 60.5 98 30.6
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 6.4e-07 58.2 125 26.4
CsaV3_2G025320 Cucumis sativus L. HOM05D006725 ORTHO05D008223 8.4e-07 57.8 125 24.8
RcHm_v2.0_Chr4g0431131 Rosa chinensis HOM05D006725 ORTHO05D008223 2.4e-06 56.2 101 24.8
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 9.3e-06 54.3 63 38.1


User provided reference genes

Program Settings