Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G055 Micromonas commoda HOM05D003188 ORTHO05D003602 9.1e-219 763.5 438 100.0
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 1.6e-34 151.4 455 31.2
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 3.1e-33 147.1 391 30.4
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.2e-32 145.2 392 31.1
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 1.5e-32 144.8 463 30.5
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 1.5e-32 144.8 384 31.8
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 2.0e-32 144.4 392 31.9
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.0e-32 144.4 392 31.1
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 2.6e-32 144.1 461 31.2
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 2.6e-32 144.1 395 32.9
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 3.4e-32 143.7 387 33.1
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 7.6e-32 142.5 453 30.0
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 7.6e-32 142.5 392 31.6
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 7.6e-32 142.5 395 30.1
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 2.2e-31 141.0 394 31.7
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 2.2e-31 141.0 392 31.9
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 2.2e-31 141.0 394 32.5
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.2e-31 141.0 384 31.0
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.2e-31 141.0 384 31.0
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.2e-31 141.0 392 31.4
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 2.9e-31 140.6 337 32.6
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 2.9e-31 140.6 394 30.7
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 2.9e-31 140.6 347 32.9
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 3.8e-31 140.2 463 31.3
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 5.0e-31 139.8 392 31.1
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 5.0e-31 139.8 388 30.9
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 6.5e-31 139.4 394 30.2
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 8.4e-31 139.0 396 32.3
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 1.1e-30 138.7 394 30.2
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.1e-30 138.7 332 32.8
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 1.1e-30 138.7 332 32.8
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 1.1e-30 138.7 394 30.2
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 1.1e-30 138.7 392 31.4
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 1.9e-30 137.9 397 31.7
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 1.9e-30 137.9 394 29.9
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 1.9e-30 137.9 389 30.8
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 3.2e-30 137.1 455 28.8
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.2e-30 137.1 390 31.8
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 3.2e-30 137.1 392 30.1
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 4.2e-30 136.7 332 32.5
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 5.5e-30 136.3 391 29.9
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 5.5e-30 136.3 385 30.9
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 5.5e-30 136.3 388 30.9
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 5.5e-30 136.3 393 30.3
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 7.2e-30 136.0 394 31.5
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 7.2e-30 136.0 386 31.1
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 7.2e-30 136.0 333 32.1
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 9.3e-30 135.6 393 30.3
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 1.6e-29 134.8 390 31.8
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 1.6e-29 134.8 391 29.9
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 2.1e-29 134.4 394 30.5
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 2.1e-29 134.4 392 31.1
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 2.1e-29 134.4 356 31.7
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 2.7e-29 134.0 456 29.8
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 2.7e-29 134.0 473 28.5
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 2.7e-29 134.0 463 28.7
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 3.5e-29 133.7 400 30.0
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 4.6e-29 133.3 388 30.9
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 4.6e-29 133.3 266 35.7
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 7.9e-29 132.5 390 31.5
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 1.0e-28 132.1 457 30.6
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.0e-28 132.1 399 31.6
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 1.3e-28 131.7 396 30.6
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 1.8e-28 131.3 279 35.5
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.8e-28 131.3 367 30.8
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 2.3e-28 131.0 376 30.3
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 2.3e-28 131.0 398 31.2
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 2.3e-28 131.0 396 31.6
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 3.0e-28 130.6 279 35.1
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 3.0e-28 130.6 395 30.9
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 3.0e-28 130.6 394 28.9
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 5.1e-28 129.8 387 31.8
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 5.1e-28 129.8 403 29.8
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 5.1e-28 129.8 391 31.5
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 6.7e-28 129.4 396 30.6
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 8.7e-28 129.0 366 30.3
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 1.1e-27 128.6 390 28.7
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 1.1e-27 128.6 454 28.2
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 1.1e-27 128.6 400 30.0
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 1.9e-27 127.9 392 29.3
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 2.5e-27 127.5 343 32.1
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 2.5e-27 127.5 396 30.1
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 2.5e-27 127.5 351 32.2
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 2.5e-27 127.5 390 28.7
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 3.3e-27 127.1 390 28.7
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 4.3e-27 126.7 398 28.6
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 4.3e-27 126.7 400 30.0
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 5.7e-27 126.3 396 31.1
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 7.4e-27 125.9 397 31.0
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 9.7e-27 125.6 397 29.7
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 9.7e-27 125.6 349 30.9
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 1.3e-26 125.2 392 30.6
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 1.3e-26 125.2 398 30.7
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 1.6e-26 124.8 398 29.1
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.6e-26 124.8 394 29.7
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 2.2e-26 124.4 453 28.0
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 2.8e-26 124.0 390 31.0
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 2.8e-26 124.0 460 28.3
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 1.4e-25 121.7 395 28.9
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.8e-25 121.3 392 30.1
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 2.4e-25 120.9 391 29.4
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 2.4e-25 120.9 384 30.7
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 3.1e-25 120.6 395 29.6
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 4.1e-25 120.2 395 27.1
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 5.3e-25 119.8 404 28.5
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 5.3e-25 119.8 396 29.8
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 9.0e-25 119.0 301 32.6
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 9.0e-25 119.0 258 32.9
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 9.0e-25 119.0 393 27.5
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 1.5e-24 118.2 239 36.0
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.6e-24 117.5 385 29.1
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 2.6e-24 117.5 385 29.1
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 2.6e-24 117.5 385 29.1
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 2.6e-24 117.5 391 29.2
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 3.4e-24 117.1 459 29.6
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 4.5e-24 116.7 387 28.9
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 4.5e-24 116.7 382 29.1
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.5e-24 116.7 361 29.4
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 1.7e-23 114.8 383 29.2
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 2.9e-23 114.0 409 28.9
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 2.9e-23 114.0 423 28.1
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 3.8e-23 113.6 255 34.9
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 8.5e-23 112.5 388 28.1
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 8.5e-23 112.5 348 30.2
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 8.5e-23 112.5 339 29.5
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 4.2e-22 110.2 380 28.9
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 9.4e-22 109.0 398 28.4
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 2.1e-21 107.8 386 27.2
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 3.6e-21 107.1 233 34.3
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 3.6e-21 107.1 332 28.0
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 4.6e-21 106.7 373 28.7
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 2.3e-20 104.4 447 26.2
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 6.7e-20 102.8 461 26.5
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 8.8e-20 102.4 407 27.3
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 2.0e-19 101.3 337 29.4
Cre11.g481550 Chlamydomonas reinhardtii HOM05D003188 ORTHO05D003602 5.7e-19 99.8 282 30.5
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.3e-18 98.6 394 28.2
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.3e-18 98.6 393 27.5
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.3e-18 98.6 270 32.2
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 1.7e-18 98.2 201 34.8
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.7e-18 98.2 383 25.8
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 3.7e-18 97.1 404 27.0
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.7e-18 97.1 383 26.1
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.1e-17 95.5 277 31.0
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 1.4e-17 95.1 230 34.3
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.5e-16 91.7 197 35.5
PRCOL_00002792 Prasinoderma coloniale HOM05D003188 ORTHO05D003602 1.5e-16 91.7 359 27.3
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 5.9e-16 89.7 240 31.2
Potri.015G051000 Populus trichocarpa HOM05D003188 ORTHO05D003602 1.0e-15 89.0 331 29.6
Sed0006028 Sechium edule HOM05D003188 ORTHO05D003602 1.0e-15 89.0 265 27.5
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 6.5e-15 86.3 274 29.2
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.2e-14 84.0 231 31.2
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 4.2e-14 83.6 379 25.9
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 4.2e-14 83.6 398 25.6
Sc02g0004270 Simmondsia chinensis HOM05D003188 ORTHO05D003602 5.5e-14 83.2 313 27.8
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 1.6e-13 81.6 215 31.2
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 2.7e-13 80.9 274 27.4
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 3.6e-13 80.5 389 25.7
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 6.7e-12 76.3 394 26.9
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 6.7e-12 76.3 394 26.9
Os12g0140266 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 8.8e-12 75.9 229 27.9
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 3.3e-11 73.9 389 27.0
CSS0039000 Camellia sinensis var. sinensis HOM05D003188 ORTHO05D003602 4.8e-10 70.1 113 36.3
FvH4_4g17460 Fragaria vesca HOM05D003188 ORTHO05D003602 4.8e-10 70.1 142 36.6
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 4.8e-10 70.1 127 37.0
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 1.8e-09 68.2 128 38.3
Rhsim09G0110300 Rhododendron simsii HOM05D003188 ORTHO05D003602 3.1e-09 67.4 84 46.4
SalBow1G5101 Salvia bowleyana HOM05D003188 ORTHO05D003602 3.1e-09 67.4 84 47.6
Os11g0137400 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 5.3e-09 66.6 87 48.3
SHI18942 Sapria himalayana HOM05D003188 ORTHO05D003602 2.0e-08 64.7 83 44.6
SHI18941 Sapria himalayana HOM05D003188 ORTHO05D003602 5.9e-08 63.2 104 31.7
FvH4_6g19571 Fragaria vesca HOM05D003188 ORTHO05D003602 2.9e-07 60.8 128 35.9
Os11g0137500 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 5.0e-07 60.1 163 27.0


User provided reference genes

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