Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 4.4e-252 874.8 691 100.0
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 8.1e-20 103.2 211 28.0
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 3.3e-13 81.3 88 36.4
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 4.3e-13 80.9 88 36.4
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 9.6e-13 79.7 99 36.4
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 2.1e-12 78.6 114 32.5
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.1e-12 78.6 126 31.0
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 2.8e-12 78.2 94 34.0
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.8e-12 78.2 124 30.6
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.8e-12 78.2 124 30.6
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 2.8e-12 78.2 99 31.3
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 3.6e-12 77.8 99 39.4
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 4.8e-12 77.4 97 33.0
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 4.8e-12 77.4 94 35.1
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 6.2e-12 77.0 94 33.0
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 6.2e-12 77.0 94 33.0
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 8.1e-12 76.6 94 35.1
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 1.4e-11 75.9 172 26.7
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.4e-11 75.9 124 29.8
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 1.4e-11 75.9 87 32.2
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 1.4e-11 75.9 93 32.3
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 1.8e-11 75.5 91 34.1
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 3.1e-11 74.7 131 30.5
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.1e-11 74.7 93 26.9
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 3.1e-11 74.7 94 29.8
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 3.1e-11 74.7 94 31.9
Cre12.g492750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D138784 4.0e-11 74.3 197 28.4
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 5.3e-11 73.9 139 28.8
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 6.9e-11 73.6 93 31.2
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 6.9e-11 73.6 91 34.1
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 6.9e-11 73.6 104 29.8
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 9.0e-11 73.2 115 34.8
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 9.0e-11 73.2 102 31.4
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 1.2e-10 72.8 90 35.6
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 1.2e-10 72.8 121 26.4
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 1.5e-10 72.4 116 29.3
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 1.5e-10 72.4 152 27.0
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 1.5e-10 72.4 164 24.4
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.5e-10 72.4 94 29.8
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 2.0e-10 72.0 94 31.9
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 2.0e-10 72.0 92 29.3
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 2.0e-10 72.0 99 33.3
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 2.0e-10 72.0 99 33.3
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.6e-10 71.6 93 31.2
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 2.6e-10 71.6 93 31.2
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 2.6e-10 71.6 92 29.3
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 3.4e-10 71.2 96 33.3
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 3.4e-10 71.2 94 33.0
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 4.5e-10 70.9 104 27.9
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 5.8e-10 70.5 93 31.2
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 5.8e-10 70.5 93 30.1
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 5.8e-10 70.5 91 30.8
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 5.8e-10 70.5 90 32.2
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 7.6e-10 70.1 91 30.8
PRCOL_00004061 Prasinoderma coloniale HOM05D003809 ORTHO05D003935 7.6e-10 70.1 81 37.0
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 7.6e-10 70.1 105 26.7
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 9.9e-10 69.7 94 30.9
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 9.9e-10 69.7 92 31.5
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 9.9e-10 69.7 91 30.8
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 1.3e-09 69.3 118 25.4
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 1.3e-09 69.3 111 29.7
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 1.3e-09 69.3 93 32.3
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.3e-09 69.3 66 42.4
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.7e-09 68.9 107 28.0
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 1.7e-09 68.9 85 29.4
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 1.7e-09 68.9 93 28.0
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 1.7e-09 68.9 106 28.3
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 2.2e-09 68.6 111 29.7
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 2.2e-09 68.6 111 29.7
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 2.2e-09 68.6 88 30.7
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 2.9e-09 68.2 95 31.6
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 2.9e-09 68.2 111 28.8
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.9e-09 68.2 122 25.4
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 2.9e-09 68.2 93 32.3
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 2.9e-09 68.2 117 27.4
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 2.9e-09 68.2 85 30.6
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 3.8e-09 67.8 94 29.8
MCO16G173 Micromonas commoda HOM05D003809 ORTHO05D003935 3.8e-09 67.8 80 36.2
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 4.9e-09 67.4 112 29.5
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 4.9e-09 67.4 93 30.1
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 4.9e-09 67.4 94 27.7
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 4.9e-09 67.4 117 26.5
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 4.9e-09 67.4 96 27.1
MCO16G355 Micromonas commoda HOM05D001235 ORTHO05D005684 4.9e-09 67.4 113 34.5
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 4.9e-09 67.4 93 29.0
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 6.4e-09 67.0 91 27.5
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 6.4e-09 67.0 122 25.4
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 6.4e-09 67.0 105 26.7
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 6.4e-09 67.0 94 30.9
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 6.4e-09 67.0 91 26.4
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 6.4e-09 67.0 94 28.7
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 6.4e-09 67.0 105 28.6
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 8.4e-09 66.6 94 28.7
MCO13G353 Micromonas commoda HOM05D003809 ORTHO05D003935 8.4e-09 66.6 90 34.4
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 8.4e-09 66.6 91 25.3
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 1.1e-08 66.2 92 31.5
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 1.1e-08 66.2 88 30.7
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 1.1e-08 66.2 92 31.5
Cre09.g415600 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.1e-08 66.2 87 32.2
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 1.1e-08 66.2 136 25.0
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 1.1e-08 66.2 94 28.7
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 1.1e-08 66.2 91 34.1
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 1.4e-08 65.9 96 30.2
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 1.4e-08 65.9 94 28.7
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 1.4e-08 65.9 94 28.7
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 1.4e-08 65.9 94 28.7
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 1.4e-08 65.9 94 28.7
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 1.4e-08 65.9 94 28.7
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 1.4e-08 65.9 90 28.9
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 1.4e-08 65.9 93 29.0
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.9e-08 65.5 122 24.6
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.9e-08 65.5 122 24.6
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 1.9e-08 65.5 94 28.7
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 1.9e-08 65.5 94 28.7
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.9e-08 65.5 96 32.3
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 1.9e-08 65.5 94 27.7
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.9e-08 65.5 92 27.2
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.9e-08 65.5 92 28.3
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 1.9e-08 65.5 84 29.8
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 2.4e-08 65.1 85 29.4
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 2.4e-08 65.1 92 26.1
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 2.4e-08 65.1 85 29.4
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 2.4e-08 65.1 94 30.9
SalBow1G2268 Salvia bowleyana HOM05D005318 ORTHO05D006791 2.4e-08 65.1 199 22.6
Cre10.g450500 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.2e-08 64.7 107 30.8
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 3.2e-08 64.7 122 26.2
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 3.2e-08 64.7 116 27.6
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 3.2e-08 64.7 121 29.8
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 3.2e-08 64.7 91 29.7
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 4.2e-08 64.3 104 26.9
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 4.2e-08 64.3 94 27.7
MCO16G448 Micromonas commoda HOM05D003809 ORTHO05D003935 4.2e-08 64.3 101 31.7
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 5.4e-08 63.9 94 27.7
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 5.4e-08 63.9 97 24.7
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 7.1e-08 63.5 94 27.7
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 7.1e-08 63.5 93 29.0
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 7.1e-08 63.5 93 29.0
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 7.1e-08 63.5 150 22.0
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 7.1e-08 63.5 92 28.3
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 9.3e-08 63.2 94 26.6
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 9.3e-08 63.2 85 25.9
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 9.3e-08 63.2 84 27.4
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 9.3e-08 63.2 85 30.6
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 2.1e-07 62.0 91 27.5
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 2.1e-07 62.0 91 27.5
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 2.7e-07 61.6 119 24.4
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 3.5e-07 61.2 88 29.5
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 3.5e-07 61.2 78 33.3
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 4.6e-07 60.8 104 22.1
Cre03.g158050 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D003935 6.0e-07 60.5 99 27.3
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 6.0e-07 60.5 88 29.5
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 1.0e-06 59.7 71 31.0
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 1.0e-06 59.7 142 28.2
Ah.04g150540 Amaranthus hybridus HOM05D005318 ORTHO05D006791 1.3e-06 59.3 200 25.0
Cre02.g091750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.8e-06 58.9 98 29.6
MCO09G708 Micromonas commoda HOM05D003809 ORTHO05D003935 1.8e-06 58.9 93 32.3
Solyc02g020980.4 Solanum lycopersicum HOM05D005318 ORTHO05D006791 5.1e-06 57.4 195 22.1
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 8.7e-06 56.6 111 24.3
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 8.7e-06 56.6 73 31.5


User provided reference genes

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