Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G102 Micromonas commoda HOM05D001260 ORTHO05D004134 2.0e-257 892.1 523 100.0
AagrBONN_evm.TU.Sc2ySwM_344.891 Anthoceros agrestis HOM05D001260 ORTHO05D004134 1.4e-19 102.1 246 30.5
vmacro07027 Vaccinium macrocarpon HOM05D001260 ORTHO05D004134 5.2e-19 100.1 246 32.1
SGA_v2.0_scaffold221G42704 Striga asiatica HOM05D001260 ORTHO05D004134 8.9e-19 99.4 251 30.3
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 1.2e-18 99.0 247 30.0
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 1.2e-18 99.0 218 30.7
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 2.6e-18 97.8 246 30.5
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.6e-18 97.8 243 30.0
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 3.4e-18 97.4 246 31.3
SGA_v2.0_scaffold2G01050 Striga asiatica HOM05D001260 ORTHO05D004134 7.5e-18 96.3 254 29.5
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 7.5e-18 96.3 243 28.8
vmacro10208 Vaccinium macrocarpon HOM05D001260 ORTHO05D004134 7.5e-18 96.3 195 33.8
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 9.8e-18 95.9 247 29.6
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 9.8e-18 95.9 247 29.6
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 9.8e-18 95.9 245 29.8
MBI04_g44160_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 9.8e-18 95.9 241 28.6
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 9.8e-18 95.9 244 30.3
SMO169G0008 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 9.8e-18 95.9 188 34.0
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 1.3e-17 95.5 254 29.1
Lj8A76T111 Lonicera japonica HOM05D001260 ORTHO05D004134 1.3e-17 95.5 246 30.5
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.3e-17 95.5 242 29.3
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 1.3e-17 95.5 242 29.3
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 1.7e-17 95.1 242 31.0
Pp3c13_5000 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.7e-17 95.1 241 29.0
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 2.2e-17 94.7 241 28.6
Pp3c3_3110 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.2e-17 94.7 243 30.5
Actinidia02910 Actinidia chinensis HOM05D001260 ORTHO05D004134 2.8e-17 94.4 216 30.6
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 2.8e-17 94.4 245 29.8
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 3.7e-17 94.0 245 29.4
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 4.9e-17 93.6 246 28.9
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 4.9e-17 93.6 247 30.8
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 6.3e-17 93.2 247 30.0
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 6.3e-17 93.2 247 30.4
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 6.3e-17 93.2 243 30.0
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 6.3e-17 93.2 246 30.1
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 6.3e-17 93.2 222 30.6
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 8.3e-17 92.8 243 28.4
Sopen03g027210 Solanum pennellii HOM05D001260 ORTHO05D004134 8.3e-17 92.8 241 29.5
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 8.3e-17 92.8 247 29.1
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 1.1e-16 92.4 243 28.4
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 1.1e-16 92.4 217 29.0
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 1.1e-16 92.4 217 29.0
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 1.1e-16 92.4 245 29.4
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 1.1e-16 92.4 245 29.8
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 1.1e-16 92.4 247 30.0
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 1.1e-16 92.4 244 28.7
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 1.4e-16 92.0 218 29.8
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 1.4e-16 92.0 218 29.8
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.4e-16 92.0 248 30.6
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 1.4e-16 92.0 245 28.6
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 1.4e-16 92.0 243 28.8
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 1.4e-16 92.0 247 29.6
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 1.8e-16 91.7 217 29.0
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 1.8e-16 91.7 247 29.6
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 1.8e-16 91.7 241 29.0
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 1.8e-16 91.7 243 28.8
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 1.8e-16 91.7 243 30.0
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 2.4e-16 91.3 220 30.5
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 2.4e-16 91.3 219 29.2
CDE01G0546 Ceratophyllum demersum HOM05D001260 ORTHO05D004134 2.4e-16 91.3 242 28.9
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 2.4e-16 91.3 247 30.4
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 2.4e-16 91.3 247 29.1
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 2.4e-16 91.3 245 29.4
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 2.4e-16 91.3 246 30.1
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 2.4e-16 91.3 244 28.7
Sc05g0005760 Simmondsia chinensis HOM05D001260 ORTHO05D004134 2.4e-16 91.3 247 30.0
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 3.2e-16 90.9 220 29.5
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 3.2e-16 90.9 247 28.7
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 3.2e-16 90.9 246 30.1
Potri.010G197700 Populus trichocarpa HOM05D001260 ORTHO05D004134 3.2e-16 90.9 242 27.7
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 4.1e-16 90.5 246 29.7
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 4.1e-16 90.5 242 28.1
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 4.1e-16 90.5 242 28.1
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 4.1e-16 90.5 246 29.3
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 4.1e-16 90.5 243 28.0
Solyc03g079920.3 Solanum lycopersicum HOM05D001260 ORTHO05D004134 4.1e-16 90.5 241 29.0
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 5.4e-16 90.1 244 28.7
CBR_g37200 Chara braunii HOM05D001260 ORTHO05D004134 5.4e-16 90.1 218 29.4
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 5.4e-16 90.1 241 28.6
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 5.4e-16 90.1 241 29.0
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 5.4e-16 90.1 243 27.2
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 5.4e-16 90.1 241 29.5
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 7.0e-16 89.7 170 31.8
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 7.0e-16 89.7 218 30.3
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 7.0e-16 89.7 248 30.2
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 7.0e-16 89.7 248 30.2
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 7.0e-16 89.7 248 30.2
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 7.0e-16 89.7 241 29.0
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 7.0e-16 89.7 217 29.5
PGSC0003DMG400021693 Solanum tuberosum HOM05D001260 ORTHO05D004134 7.0e-16 89.7 241 29.5
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 7.0e-16 89.7 247 28.7
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 7.0e-16 89.7 250 28.4
Ah.13g074360 Amaranthus hybridus HOM05D001260 ORTHO05D004134 9.2e-16 89.4 243 28.0
Haze_17132 Corylus avellana HOM05D001260 ORTHO05D004134 9.2e-16 89.4 245 28.6
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 9.2e-16 89.4 248 29.4
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 9.2e-16 89.4 241 29.5
Prupe.2G241200 Prunus persica HOM05D001260 ORTHO05D004134 9.2e-16 89.4 246 30.5
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 9.2e-16 89.4 241 28.2
TPR.G25828 Trifolium pratense HOM05D001260 ORTHO05D004134 9.2e-16 89.4 169 33.1
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 9.2e-16 89.4 247 28.3
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 1.2e-15 89.0 241 29.9
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 1.2e-15 89.0 243 27.6
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 1.2e-15 89.0 241 28.2
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 1.2e-15 89.0 255 27.8
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 1.6e-15 88.6 246 30.1
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 2.0e-15 88.2 245 28.2
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 2.0e-15 88.2 241 27.8
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.0e-15 88.2 248 29.8
Nitab4.5_0000779g0070 Nicotiana tabacum HOM05D001260 ORTHO05D004134 2.0e-15 88.2 239 28.5
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 2.0e-15 88.2 240 28.3
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 2.7e-15 87.8 241 29.0
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 2.7e-15 87.8 242 27.7
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 2.7e-15 87.8 245 30.2
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 2.7e-15 87.8 248 29.8
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 2.7e-15 87.8 243 29.2
SalBow6G1429 Salvia bowleyana HOM05D001260 ORTHO05D004134 2.7e-15 87.8 243 29.2
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 5.9e-15 86.7 241 29.0
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 5.9e-15 86.7 215 29.8
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 5.9e-15 86.7 214 28.5
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 5.9e-15 86.7 242 27.7
Zm00001eb095480 Zea mays HOM05D001260 ORTHO05D004134 5.9e-15 86.7 241 29.5
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 7.8e-15 86.3 241 28.6
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 1.0e-14 85.9 214 29.4
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.0e-14 85.9 248 29.8
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 1.7e-14 85.1 242 26.9
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 2.3e-14 84.7 241 28.6
Peaxi162Scf00611g00324 Petunia axillaris HOM05D001260 ORTHO05D004134 2.3e-14 84.7 241 28.2
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 2.9e-14 84.3 251 28.7
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 3.9e-14 84.0 242 26.9
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 5.6e-13 80.1 245 29.0
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 4.7e-12 77.0 219 27.4
unitig_37.g12012 Utricularia gibba HOM05D001260 ORTHO05D004134 1.0e-11 75.9 192 30.2
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 4.0e-11 73.9 192 29.7
Rhsim08G0019600 Rhododendron simsii HOM05D001260 ORTHO05D004134 4.0e-11 73.9 131 34.4
Atru.chr12.293 Acer truncatum HOM05D001260 ORTHO05D004134 2.6e-10 71.2 131 31.3
Atru.chr12.333 Acer truncatum HOM05D000115 ORTHO05D004134 7.5e-10 69.7 145 29.7
Nitab4.5_0004474g0060 Nicotiana tabacum HOM05D001260 ORTHO05D004134 2.9e-09 67.8 184 28.3
MBI18_g33591_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 4.9e-09 67.0 121 32.2
CDE04G3718 Ceratophyllum demersum HOM05D001260 ORTHO05D004134 8.3e-09 66.2 205 25.4
MBI14_g06400_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.1e-08 65.9 121 32.2
MBI15_g47610_MAGBIO Magnolia biondii HOM05D001260 ORTHO05D004134 1.1e-08 65.9 121 32.2
Peaxi162Scf01064g00257 Petunia axillaris HOM05D001260 ORTHO05D004134 1.1e-08 65.9 197 28.9
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 1.1e-08 65.9 181 30.4
Rhsim08G0019400 Rhododendron simsii HOM05D006674 ORTHO05D007954 3.2e-08 64.3 119 34.5
SEGI_05272 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 3.9e-06 57.4 189 27.0


User provided reference genes

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