Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G511 Micromonas commoda HOM05D017924 ORTHO05D019596 2.4e-113 412.1 204 100.0
CBR_g49959 Chara braunii HOM05D017924 ORTHO05D019596 4.6e-64 248.4 197 65.5
Pp3c10_9720 Physcomitrium patens HOM05D017924 ORTHO05D019596 2.5e-62 242.7 197 66.0
Pp3c10_9726 Physcomitrium patens HOM05D017924 ORTHO05D019596 2.5e-62 242.7 197 66.0
AagrBONN_evm.TU.Sc2ySwM_368.448 Anthoceros agrestis HOM05D017924 ORTHO05D019596 5.6e-62 241.5 197 64.0
PRCOL_00004881 Prasinoderma coloniale HOM05D017924 ORTHO05D019596 1.4e-60 236.9 197 61.4
Cre06.g304550 Chlamydomonas reinhardtii HOM05D017924 ORTHO05D019596 2.9e-42 176.0 223 45.3
CAN.G329.11 Capsicum annuum HOM05D001511 ORTHO05D009027 2.2e-13 80.1 176 35.8
Peaxi162Scf00000g02817 Petunia axillaris HOM05D001511 ORTHO05D009027 2.2e-13 80.1 175 36.0
Hma1.2p1_0416F.1_g148520 Hydrangea macrophylla HOM05D001511 ORTHO05D009027 2.8e-13 79.7 195 34.9
HPP92_024582 Vanilla planifolia HOM05D001511 ORTHO05D009027 3.7e-13 79.3 182 33.0
PGSC0003DMG400015373 Solanum tuberosum HOM05D001511 ORTHO05D009027 8.2e-13 78.2 175 36.0
Gorai.013G172100 Gossypium raimondii HOM05D001511 ORTHO05D009027 1.1e-12 77.8 192 33.3
Solyc12g014060.2 Solanum lycopersicum HOM05D001511 ORTHO05D009027 1.8e-12 77.0 175 36.0
Sopen12g005830 Solanum pennellii HOM05D001511 ORTHO05D009027 1.8e-12 77.0 179 35.2
Os08g0377400 Oryza sativa ssp. japonica HOM05D001511 ORTHO05D009027 2.4e-12 76.6 191 34.0
Zm00001eb042610 Zea mays HOM05D001511 ORTHO05D009027 2.4e-12 76.6 179 31.8
Nitab4.5_0005522g0010 Nicotiana tabacum HOM05D001511 ORTHO05D009027 3.1e-12 76.3 174 36.2
Duzib213G0763 Durio zibethinus HOM05D001511 ORTHO05D009027 4.1e-12 75.9 174 35.1
Nitab4.5_0000332g0210 Nicotiana tabacum HOM05D001511 ORTHO05D009027 5.3e-12 75.5 174 36.2
CSS0041260 Camellia sinensis var. sinensis HOM05D001511 ORTHO05D009027 7.0e-12 75.1 176 34.7
Nn1g06364 Nelumbo nucifera HOM05D001511 ORTHO05D009027 7.0e-12 75.1 166 36.7
A05p34360 Brassica napus HOM05D000599 ORTHO05D006883 1.2e-11 74.3 125 39.2
BraA05t22256Z Brassica rapa HOM05D000599 ORTHO05D006883 1.2e-11 74.3 125 39.2
THA.LOC104810451 Tarenaya hassleriana HOM05D001511 ORTHO05D009027 1.2e-11 74.3 193 32.1
Cc05_g11540 Coffea canephora HOM05D001511 ORTHO05D009027 2.0e-11 73.6 176 34.1
Dinv20219 Davidia involucrata HOM05D001511 ORTHO05D009027 2.0e-11 73.6 175 35.4
AT3G15080 Arabidopsis thaliana HOM05D001511 ORTHO05D009027 2.7e-11 73.2 125 39.2
PGR031G1542 Punica granatum HOM05D001511 ORTHO05D009027 2.7e-11 73.2 199 32.7
Aa31LG8G2290 Aethionema arabicum HOM05D001511 ORTHO05D009027 3.5e-11 72.8 125 38.4
Sp3g13280 Schrenkiella parvula HOM05D001511 ORTHO05D009027 5.9e-11 72.0 192 32.8
unitig_62.g23044 Utricularia gibba HOM05D001511 ORTHO05D009027 5.9e-11 72.0 127 37.8
SHI27559 Sapria himalayana HOM05D001511 ORTHO05D009027 7.7e-11 71.6 136 32.4
Rhsim04G0023400 Rhododendron simsii HOM05D001511 ORTHO05D009027 1.0e-10 71.2 176 34.1
Sc15g0002630 Simmondsia chinensis HOM05D001511 ORTHO05D009027 1.3e-10 70.9 128 35.2
ClCG11G017730 Citrullus lanatus HOM05D001511 ORTHO05D009027 1.7e-10 70.5 127 33.1
CsaV3_4G033350 Cucumis sativus L. HOM05D001511 ORTHO05D009027 2.9e-10 69.7 127 33.1
MD05G1011300 Malus domestica HOM05D005364 ORTHO05D006554 3.8e-10 69.3 127 37.0
Psat5g241280 Pisum sativum HOM05D001511 ORTHO05D009027 3.8e-10 69.3 153 33.3
TWI34G0076 Tripterygium wilfordii HOM05D005364 ORTHO05D006554 3.8e-10 69.3 127 35.4
Ciclev10008845m.g Citrus clementina HOM05D001511 ORTHO05D009027 5.0e-10 68.9 197 30.5
MELO3C025620.2 Cucumis melo HOM05D001511 ORTHO05D009027 5.0e-10 68.9 127 33.1
TPR.G29647 Trifolium pratense HOM05D001511 ORTHO05D009027 5.0e-10 68.9 131 35.1
FAN15G1836 Fragaria x ananassa HOM05D005364 ORTHO05D006554 6.5e-10 68.6 127 34.6
FAN27G1309 Fragaria x ananassa HOM05D005364 ORTHO05D006554 6.5e-10 68.6 127 34.6
Oeu035014.1 Olea europaea HOM05D001511 ORTHO05D009027 6.5e-10 68.6 127 36.2
Thhalv10021299m.g Eutrema salsugineum HOM05D001511 ORTHO05D009027 8.5e-10 68.2 192 31.8
Sed0012127 Sechium edule HOM05D001511 ORTHO05D009027 8.5e-10 68.2 127 33.1
Atru.chr2.2376 Acer truncatum HOM05D001511 ORTHO05D009027 1.1e-09 67.8 125 35.2
arahy.Tifrunner.gnm1.ann1.K1U0CI Arachis hypogaea HOM05D001511 ORTHO05D009027 1.1e-09 67.8 125 36.0
RcHm_v2.0_Chr6g0277571 Rosa chinensis HOM05D005364 ORTHO05D006554 1.1e-09 67.8 127 35.4
CiPaw.15G022800 Carya illinoinensis HOM05D005364 ORTHO05D006554 1.5e-09 67.4 127 34.6
Glyma.12G227500 Glycine max HOM05D001511 ORTHO05D009027 1.5e-09 67.4 173 34.1
QL08p023257 Quercus lobata HOM05D001511 ORTHO05D009027 1.5e-09 67.4 177 32.2
Lj1g0018455 Lotus japonicus HOM05D005364 ORTHO05D006554 1.9e-09 67.0 127 34.6
MBI06_g34194_MAGBIO Magnolia biondii HOM05D001511 ORTHO05D009027 1.9e-09 67.0 163 33.1
Phvul.005G068900 Phaseolus vulgaris HOM05D001511 ORTHO05D009027 1.9e-09 67.0 127 35.4
arahy.Tifrunner.gnm1.ann1.JQB868 Arachis hypogaea HOM05D001511 ORTHO05D009027 2.5e-09 66.6 125 36.0
VMungo0647G2252 Vigna mungo HOM05D005364 ORTHO05D006554 2.5e-09 66.6 127 34.6
CARHR239210 Cardamine hirsuta HOM05D003452 ORTHO05D004046 4.2e-09 65.9 133 28.6
Medtr1g029410 Medicago truncatula HOM05D005364 ORTHO05D006554 4.2e-09 65.9 127 31.5
RcHm_v2.0_Chr5g0031901 Rosa chinensis HOM05D001511 ORTHO05D009027 4.2e-09 65.9 128 35.2
Ah.05g169340 Amaranthus hybridus HOM05D005364 ORTHO05D006554 5.5e-09 65.5 127 32.3
AUR62026796 Chenopodium quinoa HOM05D005364 ORTHO05D006554 5.5e-09 65.5 127 33.1
Lj3g0024963 Lotus japonicus HOM05D001511 ORTHO05D009027 5.5e-09 65.5 172 32.6
Mapoly0007s0212 Marchantia polymorpha HOM05D001511 ORTHO05D009027 5.5e-09 65.5 198 30.3
Prupe.8G016300 Prunus persica HOM05D005364 ORTHO05D006554 5.5e-09 65.5 127 33.9
Glyma.13G037300 Glycine max HOM05D005364 ORTHO05D006554 7.2e-09 65.1 127 33.1
Sc15g0007420 Simmondsia chinensis HOM05D005364 ORTHO05D006554 7.2e-09 65.1 127 33.9
Sc15g0007440 Simmondsia chinensis HOM05D001552 ORTHO05D003294 7.2e-09 65.1 127 33.9
Ca_12657_v3 Cicer arietinum L. HOM05D005364 ORTHO05D003291 9.4e-09 64.7 127 31.5
Glyma.13G272800 Glycine max HOM05D001511 ORTHO05D009027 9.4e-09 64.7 128 33.6
MD10G1011100 Malus domestica HOM05D005364 ORTHO05D006554 9.4e-09 64.7 127 33.9
Psat6g039520 Pisum sativum HOM05D005364 ORTHO05D006554 9.4e-09 64.7 127 32.3
COL.COLO4_33812 Corchorus olitorius HOM05D005364 ORTHO05D006554 1.2e-08 64.3 178 28.7
Lalb_Chr25g0281671 Lupinus albus HOM05D005364 ORTHO05D006554 1.2e-08 64.3 127 33.9
SMO361G0206 Selaginella moellendorffii HOM05D001511 ORTHO05D009027 1.2e-08 64.3 132 31.8
Phvul.001G064400 Phaseolus vulgaris HOM05D005364 ORTHO05D006554 1.6e-08 63.9 127 33.1
Zm00001eb138630 Zea mays HOM05D005364 ORTHO05D006554 1.6e-08 63.9 128 34.4
SMO361G0049 Selaginella moellendorffii HOM05D001511 ORTHO05D009027 2.1e-08 63.5 132 31.1
HPP92_024633 Vanilla planifolia HOM05D001511 ORTHO05D009027 2.1e-08 63.5 180 31.1
CBR_g37123 Chara braunii HOM05D001511 ORTHO05D009027 3.6e-08 62.8 129 34.9
CBR_g39514 Chara braunii HOM05D005364 ORTHO05D006554 3.6e-08 62.8 128 32.0
PRCOL_00002441 Prasinoderma coloniale HOM05D005364 ORTHO05D006554 4.7e-08 62.4 127 33.1
Sed0010356 Sechium edule HOM05D003452 ORTHO05D004046 4.7e-08 62.4 136 28.7
Pp3c9_5320 Physcomitrium patens HOM05D001511 ORTHO05D009027 6.1e-08 62.0 172 32.0
AT5G67240 Arabidopsis thaliana HOM05D003452 ORTHO05D004046 8.0e-08 61.6 138 27.5
Glyma.14G119200 Glycine max HOM05D005364 ORTHO05D006554 1.0e-07 61.2 127 32.3
PGR142G4297 Punica granatum HOM05D005364 ORTHO05D006554 1.4e-07 60.8 127 32.3
A07p16710 Brassica napus HOM05D001905 ORTHO05D001820 1.8e-07 60.5 147 27.9
Lalb_Chr06g0173651 Lupinus albus HOM05D005364 ORTHO05D006554 1.8e-07 60.5 127 31.5
BcaC06g34807 Brassica carinata HOM05D001905 ORTHO05D001820 2.3e-07 60.1 128 29.7
MCO07G497 Micromonas commoda HOM05D001511 ORTHO05D009027 4.0e-07 59.3 168 31.5
HPP92_019392 Vanilla planifolia HOM05D005364 ORTHO05D006554 5.2e-07 58.9 127 33.9
FAN20G2210 Fragaria x ananassa HOM05D005364 ORTHO05D006554 6.8e-07 58.5 110 32.7
Aqoxy6G00357 Aquilegia oxysepala HOM05D005364 ORTHO05D006554 8.8e-07 58.2 127 32.3
BcaB02g09943 Brassica carinata HOM05D003452 ORTHO05D004046 8.8e-07 58.2 128 28.9
HanXRQChr15g0484621 Helianthus annuus HOM05D005364 ORTHO05D006554 1.5e-06 57.4 127 30.7
Lj4C689G10 Lonicera japonica HOM05D005364 ORTHO05D006554 2.0e-06 57.0 127 31.5
Carub.0008s2727 Capsella rubella HOM05D003452 ORTHO05D004046 2.6e-06 56.6 128 26.6
MBI03_g35292_MAGBIO Magnolia biondii HOM05D005364 ORTHO05D006554 2.6e-06 56.6 126 31.7
DCAR_011204 Daucus carota HOM05D001511 ORTHO05D002368 4.4e-06 55.8 161 29.8
ClCG01G017040 Citrullus lanatus HOM05D003452 ORTHO05D004046 5.7e-06 55.5 136 27.2
Medtr2g078510 Medicago truncatula HOM05D001511 ORTHO05D009027 5.7e-06 55.5 164 32.3
CDE08G0765 Ceratophyllum demersum HOM05D005364 ORTHO05D006554 7.5e-06 55.1 130 31.5
Cre11.g480060 Chlamydomonas reinhardtii HOM05D001511 ORTHO05D009027 7.5e-06 55.1 198 27.8
Dinv35063 Davidia involucrata HOM05D001511 ORTHO05D002368 7.5e-06 55.1 171 28.7
CsaV3_6G043510 Cucumis sativus L. HOM05D003452 ORTHO05D004046 9.8e-06 54.7 136 26.5


User provided reference genes

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