Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 9.5e-116 420.2 220 100.0
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 8.7e-101 370.5 220 91.8
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 2.4e-18 96.7 142 35.2
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 4.1e-18 95.9 142 36.6
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 5.4e-18 95.5 142 37.3
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 5.4e-18 95.5 142 37.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 5.4e-18 95.5 142 37.3
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 5.4e-18 95.5 142 37.3
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 5.4e-18 95.5 142 37.3
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 7.0e-18 95.1 142 36.6
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 7.0e-18 95.1 142 36.6
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 7.0e-18 95.1 142 36.6
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.2e-17 94.4 95 48.4
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.2e-17 94.4 142 35.9
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.6e-17 94.0 100 45.0
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 2.0e-17 93.6 100 47.0
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 2.0e-17 93.6 142 35.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 2.7e-17 93.2 95 47.4
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 3.5e-17 92.8 95 47.4
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 4.6e-17 92.4 95 46.3
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 4.6e-17 92.4 95 47.4
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 5.9e-17 92.0 95 47.4
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 5.9e-17 92.0 142 35.2
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 5.9e-17 92.0 138 36.2
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 7.8e-17 91.7 93 48.4
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 7.8e-17 91.7 100 43.0
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 7.8e-17 91.7 95 46.3
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 7.8e-17 91.7 95 46.3
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 1.0e-16 91.3 142 33.8
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 1.0e-16 91.3 142 33.8
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 1.0e-16 91.3 95 47.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.0e-16 91.3 142 35.2
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.0e-16 91.3 95 46.3
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 1.0e-16 91.3 142 35.2
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 1.3e-16 90.9 138 35.5
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 1.3e-16 90.9 138 35.5
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.7e-16 90.5 145 35.2
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.7e-16 90.5 142 35.2
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 1.7e-16 90.5 94 47.9
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 1.7e-16 90.5 142 37.3
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 2.3e-16 90.1 142 35.2
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 2.3e-16 90.1 95 45.3
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 2.3e-16 90.1 142 34.5
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 3.0e-16 89.7 142 38.0
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 3.0e-16 89.7 95 47.4
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 3.0e-16 89.7 138 34.1
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 3.0e-16 89.7 146 33.6
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 3.0e-16 89.7 142 34.5
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 3.0e-16 89.7 145 36.6
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 3.0e-16 89.7 143 33.6
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 3.0e-16 89.7 95 47.4
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 3.0e-16 89.7 95 47.4
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 3.0e-16 89.7 95 45.3
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 3.0e-16 89.7 147 34.7
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 3.0e-16 89.7 95 46.3
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.9e-16 89.4 138 34.1
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 3.9e-16 89.4 138 34.1
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 3.9e-16 89.4 138 34.8
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 3.9e-16 89.4 100 42.0
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 3.9e-16 89.4 142 33.1
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 3.9e-16 89.4 138 36.2
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 5.0e-16 89.0 142 34.5
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 5.0e-16 89.0 146 33.6
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 5.0e-16 89.0 142 33.1
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 5.0e-16 89.0 143 35.0
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 5.0e-16 89.0 138 35.5
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 8.6e-16 88.2 100 43.0
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 8.6e-16 88.2 142 33.8
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 1.1e-15 87.8 143 32.9
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.5e-15 87.4 100 42.0
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 1.5e-15 87.4 100 42.0
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.5e-15 87.4 141 34.0
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.9e-15 87.0 142 32.4
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 1.9e-15 87.0 137 35.0
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 2.5e-15 86.7 136 35.3
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 2.5e-15 86.7 138 33.3
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 2.5e-15 86.7 138 32.6
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 2.5e-15 86.7 95 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 3.3e-15 86.3 189 31.7
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.3e-15 86.3 100 42.0
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 3.3e-15 86.3 138 33.3
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 3.3e-15 86.3 102 44.1
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 4.3e-15 85.9 142 35.2
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 5.6e-15 85.5 138 33.3
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 5.6e-15 85.5 203 28.6
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 7.3e-15 85.1 142 33.8
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 7.3e-15 85.1 142 31.7
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 7.3e-15 85.1 138 32.6
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 9.5e-15 84.7 138 33.3
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 9.5e-15 84.7 146 32.2
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-14 84.3 142 31.7
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-14 84.3 142 31.7
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.2e-14 84.3 142 31.7
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.2e-14 84.3 149 33.6
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 1.2e-14 84.3 139 33.1
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 1.6e-14 84.0 139 34.5
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.6e-14 84.0 142 31.7
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.8e-14 83.2 142 33.1
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 3.6e-14 82.8 142 31.7
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.6e-14 82.8 142 31.0
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 6.2e-14 82.0 95 42.1
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 8.0e-14 81.6 95 42.1
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 1.2e-12 77.8 77 46.8
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 4.4e-12 75.9 166 34.3
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.9e-11 73.2 77 46.8
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 6.4e-11 72.0 129 34.1
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 8.3e-11 71.6 125 30.4
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 1.9e-10 70.5 126 31.0
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.0e-08 64.7 143 30.1
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 3.0e-08 63.2 68 42.6
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 3.0e-08 63.2 64 43.8


User provided reference genes

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