Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 6.5e-168 594.0 296 100.0
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.4e-84 315.8 295 55.6
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 1.1e-82 310.8 304 53.6
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 3.5e-81 305.8 305 54.1
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 4.6e-81 305.4 298 54.7
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 7.9e-81 304.7 296 54.1
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 7.9e-81 304.7 297 53.5
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.3e-80 303.9 299 54.2
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.3e-80 303.1 298 54.4
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 3.0e-80 302.8 302 53.3
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 3.9e-80 302.4 302 52.0
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 6.7e-80 301.6 299 53.2
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 8.7e-80 301.2 299 54.2
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.5e-79 300.4 299 54.2
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.3e-79 299.3 298 52.3
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 7.4e-79 298.1 303 53.1
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 9.6e-79 297.7 303 51.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 9.6e-79 297.7 298 52.0
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.3e-78 297.4 303 51.8
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.3e-78 297.4 299 53.2
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.6e-78 297.0 299 53.2
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 3.6e-78 295.8 298 51.7
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 3.6e-78 295.8 298 51.7
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 3.6e-78 295.8 295 52.5
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 6.2e-78 295.0 301 51.8
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 6.2e-78 295.0 298 51.0
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 1.1e-77 294.3 300 52.3
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.1e-77 294.3 296 52.0
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.1e-77 294.3 299 50.8
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.4e-77 293.9 296 51.7
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.8e-77 293.5 295 51.5
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.8e-77 293.5 298 51.7
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.4e-77 293.1 295 50.5
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 4.0e-77 292.4 300 51.7
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 4.0e-77 292.4 300 51.7
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 4.0e-77 292.4 298 52.3
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 4.0e-77 292.4 300 51.3
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 4.0e-77 292.4 299 52.5
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 4.0e-77 292.4 298 50.3
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 4.0e-77 292.4 298 50.3
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 5.3e-77 292.0 306 51.3
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 6.9e-77 291.6 286 52.4
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 6.9e-77 291.6 295 51.9
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.9e-77 291.6 298 50.0
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 9.0e-77 291.2 298 52.0
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 9.0e-77 291.2 298 50.7
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 9.0e-77 291.2 295 51.5
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.2e-76 290.8 303 50.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.2e-76 290.8 289 51.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.2e-76 290.8 295 51.2
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.5e-76 290.4 297 50.5
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.5e-76 290.4 298 51.0
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.5e-76 290.4 298 50.0
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 2.0e-76 290.0 300 51.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 2.0e-76 290.0 296 51.7
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.0e-76 290.0 298 51.0
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.0e-76 290.0 290 51.4
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.0e-76 290.0 298 51.7
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 2.0e-76 290.0 295 51.5
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 2.0e-76 290.0 299 50.8
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.0e-76 290.0 295 51.2
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-76 289.7 298 52.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 2.6e-76 289.7 298 51.0
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 3.4e-76 289.3 295 51.5
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 4.5e-76 288.9 298 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 5.8e-76 288.5 295 51.9
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 7.6e-76 288.1 291 51.2
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 7.6e-76 288.1 294 51.0
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 7.6e-76 288.1 297 51.5
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.7e-75 287.0 295 50.5
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.7e-75 287.0 299 52.2
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.2e-75 286.6 295 50.2
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 2.2e-75 286.6 295 49.8
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 2.9e-75 286.2 299 52.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.9e-75 286.2 298 50.3
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 2.9e-75 286.2 296 51.0
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.1e-74 284.3 295 50.8
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.1e-74 284.3 299 49.5
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.1e-74 284.3 296 49.7
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.1e-74 284.3 312 48.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.4e-74 283.9 297 49.8
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.9e-74 283.5 297 51.2
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.9e-74 283.5 298 50.3
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 2.4e-74 283.1 298 51.0
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 2.4e-74 283.1 295 50.5
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.4e-74 283.1 298 49.0
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 5.5e-74 282.0 298 50.0
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 5.5e-74 282.0 298 49.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 5.5e-74 282.0 286 49.3
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 5.5e-74 282.0 295 49.5
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.1e-74 281.6 292 49.3
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 4.6e-73 278.9 295 49.5
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 4.6e-73 278.9 295 50.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 7.9e-73 278.1 298 49.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 7.9e-73 278.1 298 49.7
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 7.9e-73 278.1 293 48.5
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.0e-72 277.7 296 49.0
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.0e-72 277.7 329 45.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 3.9e-72 275.8 295 48.5
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 5.1e-72 275.4 295 50.2
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 5.1e-72 275.4 295 50.2
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 6.7e-72 275.0 295 49.8
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 6.7e-72 275.0 324 47.5
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.7e-72 275.0 298 48.0
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 8.7e-72 274.6 296 49.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.5e-71 273.9 296 47.6
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.9e-71 273.5 332 45.2
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.3e-71 272.7 203 62.6
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 7.4e-71 271.6 317 46.7
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 7.4e-71 271.6 277 50.5
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.1e-70 270.0 319 46.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 4.8e-70 268.9 203 62.6
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 8.1e-70 268.1 295 50.5
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.4e-69 267.3 297 48.1
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 5.3e-69 265.4 276 51.8
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 3.4e-68 262.7 203 62.1
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 1.3e-67 260.8 295 47.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 4.9e-67 258.8 189 64.6
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 9.3e-66 254.6 200 59.0
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 3.5e-65 252.7 295 47.8
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.5e-65 252.7 328 43.6
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 1.6e-62 243.8 265 48.3
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.5e-60 235.7 388 39.9
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 7.6e-60 235.0 299 43.8
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 6.5e-59 231.9 188 56.9
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.0e-56 224.6 195 56.4
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 1.0e-56 224.6 247 48.2
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.8e-54 215.7 295 42.7
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.0e-52 210.3 302 42.1
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 5.1e-48 195.7 301 40.5
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.2e-44 184.5 151 57.6
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.0e-43 181.4 298 38.9
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.7e-43 180.6 263 40.7
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.2e-42 176.4 216 46.8
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 7.2e-42 175.3 140 58.6
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 2.0e-36 157.1 144 54.2
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 2.0e-36 157.1 144 54.2
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 2.0e-36 157.1 144 54.2
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 3.0e-32 143.3 104 65.4
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.5e-31 141.0 102 64.7
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.1e-29 134.8 191 38.7
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 7.7e-28 128.6 93 64.5
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.9e-27 126.7 117 53.8
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.5e-26 123.6 157 43.9
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 7.2e-26 122.1 157 43.3
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 7.2e-26 122.1 157 43.3
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 3.2e-18 96.7 75 57.3
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 3.2e-18 96.7 75 57.3
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 5.5e-18 95.9 73 57.5
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 1.8e-16 90.9 157 37.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 5.7e-15 85.9 253 30.4
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 4.1e-13 79.7 57 59.6
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 7.0e-13 79.0 68 52.9
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 3.5e-12 76.6 81 45.7
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 1.7e-11 74.3 93 44.1
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 3.8e-11 73.2 56 57.1
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.6e-11 72.4 80 46.2
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 8.6e-11 72.0 111 40.5


User provided reference genes

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