Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.9e-46 188.7 91 100.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.9e-34 148.3 81 88.9
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.9e-34 148.3 81 88.9
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 1.4e-33 146.0 81 86.4
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 1.4e-33 146.0 81 87.7
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.9e-33 145.6 81 86.4
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.9e-33 145.6 81 87.7
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 7.1e-33 143.7 77 88.3
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 1.2e-32 142.9 81 82.7
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.2e-32 142.9 81 82.7
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 1.6e-32 142.5 81 84.0
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.6e-32 142.5 81 85.2
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 2.1e-32 142.1 81 82.7
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.1e-32 142.1 81 82.7
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.7e-32 141.7 81 85.2
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 6.0e-32 140.6 81 84.0
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 6.0e-32 140.6 81 82.7
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 6.0e-32 140.6 81 84.0
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 6.0e-32 140.6 81 82.7
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 6.0e-32 140.6 69 97.1
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 6.0e-32 140.6 81 86.4
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 1.0e-31 139.8 81 82.7
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.3e-31 139.4 84 82.1
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 1.8e-31 139.0 71 93.0
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 3.9e-31 137.9 81 81.5
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 3.9e-31 137.9 70 91.4
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 6.7e-31 137.1 81 81.5
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 6.7e-31 137.1 72 90.3
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 8.7e-31 136.7 81 81.5
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 1.1e-30 136.3 68 94.1
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 3.3e-30 134.8 81 80.2
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 3.3e-30 134.8 81 80.2
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 3.3e-30 134.8 69 92.8
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 4.3e-30 134.4 70 91.4
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 5.6e-30 134.0 80 82.5
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 5.6e-30 134.0 81 79.0
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 5.6e-30 134.0 81 79.0
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 5.6e-30 134.0 75 84.0
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 7.4e-30 133.7 83 79.5
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 9.6e-30 133.3 84 79.8
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 9.6e-30 133.3 81 77.8
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 1.3e-29 132.9 67 92.5
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.3e-29 132.9 83 78.3
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.6e-29 132.5 85 77.6
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-29 132.5 81 75.3
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 1.6e-29 132.5 81 75.3
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.1e-29 132.1 82 75.6
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 2.1e-29 132.1 70 88.6
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.1e-29 132.1 83 79.5
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.8e-29 131.7 81 81.5
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.8e-29 131.7 78 83.3
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 3.7e-29 131.3 68 91.2
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 3.7e-29 131.3 69 89.9
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 3.7e-29 131.3 82 78.0
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 3.7e-29 131.3 72 90.3
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 4.8e-29 131.0 68 91.2
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 6.2e-29 130.6 70 91.4
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 6.2e-29 130.6 68 91.2
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 8.2e-29 130.2 67 92.5
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 1.1e-28 129.8 83 75.9
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 1.1e-28 129.8 83 75.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.1e-28 129.8 77 83.1
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.4e-28 129.4 66 90.9
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 1.8e-28 129.0 82 73.2
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.4e-28 128.6 83 75.9
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 3.1e-28 128.3 83 74.7
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 3.1e-28 128.3 82 73.2
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 3.1e-28 128.3 82 73.2
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 3.1e-28 128.3 79 79.7
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 3.1e-28 128.3 66 90.9
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.1e-28 128.3 89 70.8
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 3.1e-28 128.3 69 91.3
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.1e-28 128.3 67 89.6
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 4.0e-28 127.9 83 74.7
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 4.0e-28 127.9 71 87.3
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 4.0e-28 127.9 82 76.8
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 5.3e-28 127.5 82 73.2
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 5.3e-28 127.5 69 88.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 5.3e-28 127.5 83 74.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.3e-28 127.5 67 88.1
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.3e-28 127.5 67 88.1
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.3e-28 127.5 67 88.1
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.3e-28 127.5 67 88.1
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 5.3e-28 127.5 69 88.4
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 5.3e-28 127.5 81 75.3
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 6.9e-28 127.1 82 78.0
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 6.9e-28 127.1 69 89.9
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.9e-28 127.1 81 77.8
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 6.9e-28 127.1 81 77.8
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 6.9e-28 127.1 81 77.8
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 6.9e-28 127.1 72 84.7
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 6.9e-28 127.1 68 88.2
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 9.0e-28 126.7 67 89.6
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 9.0e-28 126.7 68 89.7
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 9.0e-28 126.7 83 74.7
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 9.0e-28 126.7 68 85.3
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 1.2e-27 126.3 70 87.1
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 1.2e-27 126.3 70 87.1
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-27 126.3 67 86.6
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.2e-27 126.3 73 84.9
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.2e-27 126.3 73 84.9
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.5e-27 125.9 81 76.5
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 1.5e-27 125.9 70 87.1
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.5e-27 125.9 68 86.8
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 2.0e-27 125.6 81 74.1
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 2.0e-27 125.6 83 73.5
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 2.0e-27 125.6 83 73.5
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.0e-27 125.6 81 74.1
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 2.6e-27 125.2 89 69.7
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.6e-27 125.2 90 68.9
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.6e-27 125.2 89 69.7
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.6e-27 125.2 68 86.8
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.6e-27 125.2 83 73.5
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 3.4e-27 124.8 81 75.3
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 7.6e-27 123.6 67 85.1
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 7.6e-27 123.6 68 82.4
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.0e-26 123.2 81 74.1
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.0e-26 123.2 69 87.0
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.0e-26 123.2 90 67.8
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.3e-26 122.9 68 83.8
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.3e-26 122.9 83 72.3
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 1.7e-26 122.5 88 68.2
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.2e-26 122.1 81 77.8
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.9e-26 121.7 71 84.5
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 3.8e-26 121.3 64 87.5
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 3.8e-26 121.3 68 82.4
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 3.8e-26 121.3 68 82.4
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 1.1e-25 119.8 67 82.1
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 2.5e-25 118.6 81 70.4
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 2.5e-25 118.6 78 75.6
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 9.3e-25 116.7 60 88.3
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.2e-24 116.3 61 88.5
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.1e-24 115.5 69 79.7
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 7.9e-24 113.6 82 69.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 3.0e-23 111.7 83 68.7
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.5e-22 109.4 84 63.1
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.5e-22 109.4 56 89.3
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 3.3e-22 108.2 53 94.3
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 3.3e-22 108.2 81 67.9
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 7.4e-22 107.1 74 71.6
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 2.2e-21 105.5 74 68.9
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 6.3e-21 104.0 75 68.0
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.1e-20 103.2 83 66.3
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 1.3e-18 96.3 83 57.8
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.7e-18 95.9 74 64.9
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.2e-18 95.5 86 55.8
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 2.2e-18 95.5 86 55.8
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 9.7e-14 80.1 58 63.8
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 8.2e-13 77.0 64 57.8
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 1.7e-10 69.3 72 48.6
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.4e-07 59.7 76 40.8


User provided reference genes

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