Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI16_g23723_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 9.2e-53 209.9 103 100.0
MBI04_g20742_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 3.1e-16 88.6 50 88.0
MBI16_g23725_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 8.4e-14 80.5 68 63.2
TAR629G2120 Trochodendron aralioides HOM05D001092 ORTHO05D000923 1.3e-11 73.2 85 47.1
Nn1g00699 Nelumbo nucifera HOM05D001092 ORTHO05D000923 3.9e-11 71.6 86 47.7
Ciclev10024056m.g Citrus clementina HOM05D001092 ORTHO05D000923 6.6e-11 70.9 85 47.1
Solyc08g077490.2 Solanum lycopersicum HOM05D001092 ORTHO05D000923 6.6e-11 70.9 86 45.3
Sopen08g026080 Solanum pennellii HOM05D001092 ORTHO05D000923 6.6e-11 70.9 86 45.3
GSVIVG01013268001 Vitis vinifera HOM05D001092 ORTHO05D000923 6.6e-11 70.9 87 47.1
Cfa012359 Carpinus fangiana HOM05D001092 ORTHO05D000923 1.5e-10 69.7 86 45.3
Aqoxy3G02588 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 2.5e-10 68.9 86 46.5
Cpa.g.sc98.55 Carica papaya HOM05D001092 ORTHO05D000923 2.5e-10 68.9 83 49.4
vmacro00375 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 2.5e-10 68.9 84 45.2
CAN.G1445.5 Capsicum annuum HOM05D001092 ORTHO05D000923 3.3e-10 68.6 86 44.2
Atru.chr9.1144 Acer truncatum HOM05D001092 ORTHO05D000923 5.6e-10 67.8 86 43.0
Dinv28897 Davidia involucrata HOM05D001092 ORTHO05D000923 5.6e-10 67.8 86 45.3
Actinidia25929 Actinidia chinensis HOM05D001092 ORTHO05D000923 7.3e-10 67.4 85 43.5
MBI01_g02161_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 7.3e-10 67.4 65 60.0
MBI09_g20573_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 7.3e-10 67.4 65 60.0
MBI18_g30380_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 7.3e-10 67.4 65 60.0
MBI19_g46604_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 7.3e-10 67.4 65 60.0
THA.LOC104814451 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 7.3e-10 67.4 86 43.0
Rhsim11G0008200 Rhododendron simsii HOM05D001092 ORTHO05D000923 9.6e-10 67.0 84 44.0
ATR0829G162 Amborella trichopoda HOM05D001092 ORTHO05D000923 1.3e-09 66.6 86 46.5
Thecc.03G236900 Theobroma cacao HOM05D001092 ORTHO05D000923 1.3e-09 66.6 86 43.0
Duzib205G0058 Durio zibethinus HOM05D001092 ORTHO05D000923 2.1e-09 65.9 86 45.3
MBI06_g46048_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 2.1e-09 65.9 65 58.5
CANSAT21G2480 Cannabis sativa HOM05D001092 ORTHO05D000923 2.8e-09 65.5 98 40.8
MBI01_g46567_MAGBIO Magnolia biondii HOM05D109752 ORTHO05D000923 8.1e-09 63.9 31 93.5
PGR031G0629 Punica granatum HOM05D001092 ORTHO05D000923 8.1e-09 63.9 83 45.8
TWI60G0589 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 8.1e-09 63.9 86 41.9
Manes.17G019783 Manihot esculenta HOM05D001092 ORTHO05D000923 1.1e-08 63.5 86 41.9
PSO063G3710 Papaver somniferum HOM05D001092 ORTHO05D000923 1.1e-08 63.5 85 42.4
Aa31LG2G13220 Aethionema arabicum HOM05D001092 ORTHO05D000923 1.4e-08 63.2 85 40.0
ECA246G3294 Erigeron canadensis HOM05D001092 ORTHO05D000923 1.8e-08 62.8 87 41.4
HanXRQChr17g0535661 Helianthus annuus HOM05D001092 ORTHO05D000923 2.4e-08 62.4 87 40.2
Nn3g21823 Nelumbo nucifera HOM05D001092 ORTHO05D000923 2.4e-08 62.4 71 47.9
Potri.001G148800 Populus trichocarpa HOM05D001092 ORTHO05D000923 3.1e-08 62.0 86 40.7
Phvul.002G003000 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 4.0e-08 61.6 85 40.0
DCAR_000729 Daucus carota HOM05D001092 ORTHO05D000923 5.3e-08 61.2 86 41.9
FAN18G3751 Fragaria x ananassa HOM05D001092 ORTHO05D000923 5.3e-08 61.2 81 40.7
Gohir.A03G003250 Gossypium hirsutum HOM05D001092 ORTHO05D000923 5.3e-08 61.2 86 39.5
MBI01_g46566_MAGBIO Magnolia biondii HOM05D001092 ORTHO05D000923 5.3e-08 61.2 66 57.6
arahy.Tifrunner.gnm1.ann1.G3NGVJ Arachis hypogaea HOM05D001092 ORTHO05D000923 6.9e-08 60.8 85 42.4
arahy.Tifrunner.gnm1.ann1.PHJ2IJ Arachis hypogaea HOM05D001092 ORTHO05D000923 6.9e-08 60.8 85 42.4
Gohir.D03G169100 Gossypium hirsutum HOM05D001092 ORTHO05D000923 6.9e-08 60.8 86 39.5
Prupe.5G050700 Prunus persica HOM05D001092 ORTHO05D000923 6.9e-08 60.8 83 44.6
Nitab4.5_0001255g0080 Nicotiana tabacum HOM05D001092 ORTHO05D000923 9.0e-08 60.5 50 52.0
CiPaw.12G058400 Carya illinoinensis HOM05D001092 ORTHO05D000923 1.2e-07 60.1 86 39.5
Gorai.003G179200 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.2e-07 60.1 86 39.5
FvH4_5g20820 Fragaria vesca HOM05D001092 ORTHO05D000923 1.5e-07 59.7 85 38.8
FAN04G0578 Fragaria x ananassa HOM05D001092 ORTHO05D000923 1.5e-07 59.7 85 38.8
Glyma.11G039900 Glycine max HOM05D001092 ORTHO05D000923 2.6e-07 58.9 85 38.8
Gorai.004G190500 Gossypium raimondii HOM05D001092 ORTHO05D000923 3.4e-07 58.5 86 43.0
AL7G37590 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 4.5e-07 58.2 86 37.2
AT4G17140 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 4.5e-07 58.2 86 37.2
Carub.0007s2427 Capsella rubella HOM05D001092 ORTHO05D000923 5.8e-07 57.8 85 36.5
Peaxi162Scf00084g00119 Petunia axillaris HOM05D001092 ORTHO05D000923 5.8e-07 57.8 50 50.0
Sp7g17050 Schrenkiella parvula HOM05D001092 ORTHO05D000923 5.8e-07 57.8 85 38.8
TPR.G33938 Trifolium pratense HOM05D001092 ORTHO05D000923 5.8e-07 57.8 85 38.8
HPP92_014925 Vanilla planifolia HOM05D001092 ORTHO05D000923 5.8e-07 57.8 84 42.9
HPP92_014930 Vanilla planifolia HOM05D001092 ORTHO05D000923 5.8e-07 57.8 84 42.9
Sabra01G0118800 Salix brachista HOM05D001092 ORTHO05D000923 7.6e-07 57.4 86 38.4
CARHR223710 Cardamine hirsuta HOM05D001092 ORTHO05D000923 9.9e-07 57.0 85 37.6
Ca_26022_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 9.9e-07 57.0 85 40.0
Ca_30451_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 9.9e-07 57.0 85 40.0
Gohir.A08G161600 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.3e-06 56.6 86 41.9
MD04G1057200 Malus domestica HOM05D001092 ORTHO05D000923 1.3e-06 56.6 83 43.4
Thhalv10024176m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 1.7e-06 56.2 85 40.0
A08p12900 Brassica napus HOM05D001092 ORTHO05D000923 2.2e-06 55.8 85 38.8
BraA08t33273Z Brassica rapa HOM05D001092 ORTHO05D000923 2.2e-06 55.8 85 38.8
Lalb_Chr16g0379281 Lupinus albus HOM05D001092 ORTHO05D000923 2.2e-06 55.8 85 42.4
Cc08_g01550 Coffea canephora HOM05D001092 ORTHO05D000923 2.9e-06 55.5 86 38.4
MD06G1043800 Malus domestica HOM05D001092 ORTHO05D000923 2.9e-06 55.5 81 43.2
Sc07g0008990 Simmondsia chinensis HOM05D001092 ORTHO05D000923 2.9e-06 55.5 83 41.0
Lj2g0026983 Lotus japonicus HOM05D001092 ORTHO05D000923 3.8e-06 55.1 85 37.6
Medtr5g013780 Medicago truncatula HOM05D001092 ORTHO05D000923 3.8e-06 55.1 85 37.6
BcaC07g38054 Brassica carinata HOM05D001092 ORTHO05D000923 4.9e-06 54.7 85 37.6
BolC8t48437H Brassica oleracea HOM05D001092 ORTHO05D000923 4.9e-06 54.7 85 37.6
COL.COLO4_06705 Corchorus olitorius HOM05D001092 ORTHO05D000923 8.4e-06 53.9 87 41.4
RcHm_v2.0_Chr7g0207821 Rosa chinensis HOM05D001092 ORTHO05D000923 8.4e-06 53.9 85 37.6


User provided reference genes

Program Settings