Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.3e-98 361.7 183 100.0
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.3e-98 361.7 183 100.0
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.3e-89 333.2 182 87.9
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 88.5
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 3.7e-89 331.6 183 88.5
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 6.3e-89 330.9 183 87.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 86.9
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 86.9
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 88.5
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 86.9
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 86.9
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 86.9
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 85.2
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 88.0
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 86.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 86.9
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 86.9
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 86.3
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 85.8
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 85.8
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.3
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 85.2
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 85.8
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 85.8
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 84.7
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.7e-86 322.8 183 85.2
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.7e-86 322.8 183 83.6
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.7e-86 322.8 183 85.8
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 2.3e-86 322.4 183 85.2
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 3.8e-86 321.6 181 84.5
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 82.5
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 82.5
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 83.6
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 1.5e-85 319.7 181 85.1
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 83.1
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 84.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 83.1
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 83.1
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 83.6
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 83.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 7.2e-85 317.4 183 84.2
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 82.0
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 82.0
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 82.0
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 2.1e-84 315.8 190 80.5
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.1
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 82.5
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 82.5
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 81.4
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 81.4
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 6.1e-84 314.3 183 82.5
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 79.8
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 82.5
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 82.0
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.0
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.0
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.0
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 3.0e-83 312.0 182 81.9
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 80.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 82.0
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 82.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 81.4
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 78.1
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.0
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 81.4
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 78.7
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 81.4
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.6e-82 308.9 182 80.8
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.2
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 80.9
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.8
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.8
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 7.5e-82 307.4 181 80.7
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.3e-81 306.6 182 79.1
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 2.2e-81 305.8 182 79.7
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 80.3
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 78.7
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 81.4
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 80.7
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 6.3e-81 304.3 183 79.8
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 79.6
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 79.2
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.8e-80 302.8 179 81.0
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 80.9
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 79.6
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.7
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.7
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.7
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 79.0
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 80.1
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 4.1e-80 301.6 181 79.0
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.7
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.7
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 80.1
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.0e-79 299.3 179 81.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.7e-79 298.9 179 79.3
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 4.5e-79 298.1 179 79.3
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 78.7
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.3e-78 295.8 183 78.7
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.9e-78 295.4 184 76.6
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 78.1
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 8.6e-78 293.9 184 76.6
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 8.6e-78 293.9 182 80.2
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.1e-77 293.5 179 78.8
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.1e-77 293.5 183 78.1
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 3.3e-77 292.0 184 75.5
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 4.3e-77 291.6 179 78.2
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 7.3e-77 290.8 179 77.1
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 2.1e-76 289.3 228 65.8
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 4.7e-76 288.1 184 76.1
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.5e-74 283.1 184 74.5
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.5e-74 283.1 183 74.9
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 7.5e-74 280.8 185 72.4
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.3e-73 280.0 182 73.1
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 6.4e-73 277.7 219 66.2
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.1e-72 276.9 152 86.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.4e-72 276.6 183 68.9
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 3.2e-72 275.4 183 69.9
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.6e-71 273.1 183 76.0
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 7.8e-71 270.8 155 81.3
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.0e-70 270.4 183 68.3
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 6.6e-70 267.7 184 67.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.5e-69 265.8 155 83.2
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 4.7e-68 261.5 183 71.6
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 4.4e-66 255.0 181 65.2
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.1e-64 250.4 152 77.6
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 1.1e-64 250.4 181 68.5
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 3.0e-62 242.3 188 67.0
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 7.3e-61 237.7 136 83.1
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 9.5e-61 237.3 181 66.9
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 3.1e-59 232.3 183 65.0
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 6.4e-57 224.6 138 75.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 3.5e-55 218.8 155 70.3
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 7.8e-55 217.6 183 63.4
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.2e-52 210.3 184 58.2
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.1e-51 207.2 179 63.1
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 2.6e-50 202.6 158 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.3e-49 200.3 152 63.2
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.0e-46 190.7 186 49.5
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 6.6e-46 188.0 149 62.4
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.9e-45 186.4 102 89.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.6e-44 183.3 102 86.3
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.8e-43 179.9 158 57.6
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.2e-43 178.3 99 86.9
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.2e-42 177.2 100 87.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 2.0e-42 176.4 100 83.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 6.4e-41 171.4 146 58.2
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 9.3e-40 167.5 106 74.5
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.6e-37 158.3 134 59.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 9.0e-35 151.0 105 68.6
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.4e-33 144.8 81 84.0
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.1e-32 144.1 99 66.7
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.5e-29 133.7 78 82.1
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.4e-27 127.1 81 72.8
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.5e-26 122.1 101 60.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 2.4e-24 116.3 106 58.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.1e-19 100.9 68 64.7
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.9e-17 92.8 106 51.9
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 6.5e-17 91.7 52 86.5
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 9.3e-16 87.8 127 44.9
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 3.2e-08 62.8 121 36.4
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 3.2e-08 62.8 37 73.0
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 4.2e-08 62.4 81 44.4
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 2.7e-07 59.7 98 35.7
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 1.8e-06 57.0 107 31.8
Medtr7g067490 Medicago truncatula HOM05D001645 ORTHO05D001749 3.9e-06 55.8 152 26.3
MSTRG.3325 Avicennia marina HOM05D001645 ORTHO05D001749 5.1e-06 55.5 122 28.7
CAN.G1207.11 Capsicum annuum HOM05D001645 ORTHO05D001749 5.1e-06 55.5 124 29.8
TPR.G11849 Trifolium pratense HOM05D001645 ORTHO05D001749 5.1e-06 55.5 119 31.9
GSVIVG01020020001 Vitis vinifera HOM05D001645 ORTHO05D001749 5.1e-06 55.5 152 25.0
Cc07_g03270 Coffea canephora HOM05D001645 ORTHO05D001749 8.8e-06 54.7 124 29.8
Glyma.04G171400 Glycine max HOM05D001645 ORTHO05D001749 8.8e-06 54.7 90 35.6
Glyma.06G192500 Glycine max HOM05D001645 ORTHO05D001749 8.8e-06 54.7 90 35.6
Medtr3g005430 Medicago truncatula HOM05D001645 ORTHO05D001749 8.8e-06 54.7 127 29.1
Medtr3g005450 Medicago truncatula HOM05D001645 ORTHO05D001749 8.8e-06 54.7 127 29.1
Medtr4g021290 Medicago truncatula HOM05D001645 ORTHO05D001749 8.8e-06 54.7 127 29.1
Phvul.009G172300 Phaseolus vulgaris HOM05D001645 ORTHO05D001749 8.8e-06 54.7 90 35.6
Phvul.009G188600 Phaseolus vulgaris HOM05D001645 ORTHO05D001749 8.8e-06 54.7 90 35.6
Psat4g052040 Pisum sativum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 120 30.8
Psat4g166920 Pisum sativum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 120 30.8
Psat7g127080 Pisum sativum HOM05D001645 ORTHO05D001749 8.8e-06 54.7 120 30.8
VMungo0251G0977 Vigna mungo HOM05D001645 ORTHO05D001749 8.8e-06 54.7 90 35.6


User provided reference genes

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