Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g20102_MAGBIO Magnolia biondii HOM05D002112 ORTHO05D005830 4.1e-207 724.5 382 100.0
TAR369G0031 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.0e-157 560.5 383 75.7
Haze_01451 Corylus avellana HOM05D002112 ORTHO05D005830 3.0e-157 558.9 384 74.2
Atru.chr4.1269 Acer truncatum HOM05D002112 ORTHO05D005830 2.5e-156 555.8 383 74.2
Manes.04G047300 Manihot esculenta HOM05D002112 ORTHO05D005830 1.6e-155 553.1 384 72.9
GSVIVG01010853001 Vitis vinifera HOM05D002112 ORTHO05D005830 4.0e-154 548.5 383 72.3
CiPaw.01G095700 Carya illinoinensis HOM05D002112 ORTHO05D005830 5.8e-153 544.7 383 71.5
QL10p051275 Quercus lobata HOM05D002112 ORTHO05D005830 1.6e-150 536.6 381 70.9
Dinv17874 Davidia involucrata HOM05D002112 ORTHO05D005830 6.0e-150 534.6 383 73.1
Sc19g0002800 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.5e-148 530.0 382 71.2
Lj6g0007258 Lotus japonicus HOM05D002112 ORTHO05D005830 2.1e-147 526.2 383 70.0
Lj2A342T117 Lonicera japonica HOM05D002112 ORTHO05D005830 2.4e-146 522.7 386 70.2
Ciclev10020598m.g Citrus clementina HOM05D002112 ORTHO05D005830 1.5e-145 520.0 383 68.9
Nn2g10363 Nelumbo nucifera HOM05D002112 ORTHO05D005830 1.5e-145 520.0 350 76.9
Ca_04336_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 2.6e-145 519.2 383 70.0
Duzib151G0469 Durio zibethinus HOM05D002112 ORTHO05D005830 7.6e-145 517.7 383 69.2
PSO339G3553 Papaver somniferum HOM05D002112 ORTHO05D005830 3.8e-144 515.4 386 69.7
Sabra17G0015800 Salix brachista HOM05D002112 ORTHO05D005830 4.9e-144 515.0 385 69.9
CANSAT78G1637 Cannabis sativa HOM05D002112 ORTHO05D005830 6.5e-144 514.6 382 67.3
Actinidia22156 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.1e-143 513.8 384 68.2
Thhalv10020922m.g Eutrema salsugineum HOM05D002112 ORTHO05D005830 1.1e-143 513.8 383 68.4
Sabra17G0000800 Salix brachista HOM05D002112 ORTHO05D005830 1.4e-143 513.5 385 69.6
Thecc.04G174100 Theobroma cacao HOM05D002112 ORTHO05D005830 1.9e-143 513.1 384 68.8
Carub.0003s2027 Capsella rubella HOM05D002112 ORTHO05D005830 4.2e-143 511.9 383 68.4
Gohir.A10G139900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 4.2e-143 511.9 383 69.2
RcHm_v2.0_Chr2g0118821 Rosa chinensis HOM05D002112 ORTHO05D005830 2.7e-142 509.2 384 69.5
Gohir.D10G126900 Gossypium hirsutum HOM05D002112 ORTHO05D005830 6.0e-142 508.1 383 68.4
Sp3g18350 Schrenkiella parvula HOM05D002112 ORTHO05D005830 6.0e-142 508.1 383 67.9
Glyma.20G048400 Glycine max HOM05D002112 ORTHO05D005830 7.9e-142 507.7 384 68.0
Glyma.13G074600 Glycine max HOM05D002112 ORTHO05D005830 1.0e-141 507.3 384 67.4
Potri.017G026100 Populus trichocarpa HOM05D002112 ORTHO05D005830 1.0e-141 507.3 385 68.6
Gorai.011G139800 Gossypium raimondii HOM05D002112 ORTHO05D005830 3.0e-141 505.8 383 68.4
Potri.007G131700 Populus trichocarpa HOM05D002112 ORTHO05D005830 3.9e-141 505.4 385 68.8
Rhsim07G0082300 Rhododendron simsii HOM05D002112 ORTHO05D005830 6.7e-141 504.6 386 67.9
QL11p031638 Quercus lobata HOM05D002112 ORTHO05D005830 1.5e-140 503.4 382 65.2
CARHR095970 Cardamine hirsuta HOM05D002112 ORTHO05D005830 1.9e-140 503.1 385 66.5
MD04G1045800 Malus domestica HOM05D002112 ORTHO05D005830 3.3e-140 502.3 384 68.8
PGSC0003DMG400007324 Solanum tuberosum HOM05D002112 ORTHO05D005830 3.3e-140 502.3 394 65.2
vmacro13897 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 3.3e-140 502.3 388 68.3
Nitab4.5_0000632g0010 Nicotiana tabacum HOM05D002112 ORTHO05D005830 4.3e-140 501.9 394 65.5
Aqoxy7G04120 Aquilegia oxysepala HOM05D002112 ORTHO05D005830 9.6e-140 500.7 390 66.9
VMungo0540G0891 Vigna mungo HOM05D002112 ORTHO05D005830 9.6e-140 500.7 383 66.6
AL3G34040 Arabidopsis lyrata HOM05D002112 ORTHO05D005830 1.3e-139 500.4 383 67.4
DCAR_007772 Daucus carota HOM05D002112 ORTHO05D005830 1.6e-139 500.0 372 68.5
Migut.M02025 Erythranthe guttata HOM05D002112 ORTHO05D005830 2.8e-139 499.2 389 67.6
Peaxi162Scf00036g02120 Petunia axillaris HOM05D002112 ORTHO05D005830 2.8e-139 499.2 389 65.8
Solyc02g082030.3 Solanum lycopersicum HOM05D002112 ORTHO05D005830 2.8e-139 499.2 394 64.7
Sopen02g026670 Solanum pennellii HOM05D002112 ORTHO05D005830 2.8e-139 499.2 394 64.7
Prupe.1G198700 Prunus persica HOM05D002112 ORTHO05D005830 4.8e-139 498.4 375 68.8
TWI38G0996 Tripterygium wilfordii HOM05D002112 ORTHO05D005830 1.8e-138 496.5 383 66.8
BcaC05g28317 Brassica carinata HOM05D002112 ORTHO05D005377 2.4e-138 496.1 378 66.1
COL.COLO4_08219 Corchorus olitorius HOM05D002112 ORTHO05D005830 3.1e-138 495.7 382 66.8
THA.LOC104817851 Tarenaya hassleriana HOM05D002112 ORTHO05D005830 3.1e-138 495.7 387 68.0
Sabra07G0106900 Salix brachista HOM05D002112 ORTHO05D005830 4.0e-138 495.4 385 68.1
Sabra07G0118800 Salix brachista HOM05D002112 ORTHO05D005830 4.0e-138 495.4 385 68.1
C05p44010 Brassica napus HOM05D002112 ORTHO05D005377 9.0e-138 494.2 378 65.9
Actinidia04201 Actinidia chinensis HOM05D002112 ORTHO05D005830 1.5e-137 493.4 416 63.5
BolC5t33124H Brassica oleracea HOM05D002112 ORTHO05D005830 1.5e-137 493.4 378 65.9
TPR.G11324 Trifolium pratense HOM05D002112 ORTHO05D005830 2.0e-137 493.0 383 66.6
A05p28600 Brassica napus HOM05D002112 ORTHO05D005377 4.5e-137 491.9 378 66.1
BraA05t21737Z Brassica rapa HOM05D002112 ORTHO05D005377 4.5e-137 491.9 378 66.1
Aa31LG8G7130 Aethionema arabicum HOM05D002112 ORTHO05D005830 7.6e-137 491.1 382 65.2
Lalb_Chr17g0347631 Lupinus albus HOM05D002112 ORTHO05D005830 1.0e-136 490.7 386 65.0
CAN.G809.29 Capsicum annuum HOM05D002112 ORTHO05D005830 2.2e-136 489.6 323 72.4
ATR0559G336 Amborella trichopoda HOM05D002112 ORTHO05D005830 2.9e-136 489.2 377 68.7
arahy.Tifrunner.gnm1.ann1.PNXW1P Arachis hypogaea HOM05D002112 ORTHO05D005830 2.9e-136 489.2 363 68.3
Medtr3g040090 Medicago truncatula HOM05D002112 ORTHO05D005830 2.9e-136 489.2 383 66.1
AUR62031652 Chenopodium quinoa HOM05D002112 ORTHO05D005830 5.0e-136 488.4 383 64.8
FAN26G0200 Fragaria x ananassa HOM05D002112 ORTHO05D005830 5.0e-136 488.4 384 67.7
arahy.Tifrunner.gnm1.ann1.9N9T88 Arachis hypogaea HOM05D002112 ORTHO05D005830 6.5e-136 488.0 363 68.3
FvH4_1g23450 Fragaria vesca HOM05D002112 ORTHO05D005830 2.5e-135 486.1 384 67.4
FAN19G2557 Fragaria x ananassa HOM05D002112 ORTHO05D005830 2.5e-135 486.1 384 67.4
Lalb_Chr04g0249531 Lupinus albus HOM05D002112 ORTHO05D005830 4.2e-135 485.3 386 65.0
Cc09_g04780 Coffea canephora HOM05D002112 ORTHO05D005830 7.1e-135 484.6 391 66.5
FAN23G2661 Fragaria x ananassa HOM05D002112 ORTHO05D005830 1.2e-134 483.8 384 67.4
HanXRQChr12g0380031 Helianthus annuus HOM05D002112 ORTHO05D005830 1.2e-134 483.8 389 64.5
Phvul.006G021000 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 1.2e-134 483.8 383 64.5
HanXRQChr02g0033051 Helianthus annuus HOM05D002112 ORTHO05D005830 1.6e-134 483.4 354 68.1
CiPaw.06G167000 Carya illinoinensis HOM05D002112 ORTHO05D005830 3.0e-133 479.2 383 65.5
ECA246G0582 Erigeron canadensis HOM05D002112 ORTHO05D005830 6.7e-133 478.0 325 73.2
BolC1t04335H Brassica oleracea HOM05D002112 ORTHO05D005377 1.1e-132 477.2 366 67.2
BcaB04g20660 Brassica carinata HOM05D002112 ORTHO05D005830 4.3e-132 475.3 378 65.1
Ca_06168_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 3.7e-131 472.2 380 63.4
Ca_06185_v3 Cicer arietinum L. HOM05D002112 ORTHO05D005830 3.7e-131 472.2 380 63.4
BcaC09g48987 Brassica carinata HOM05D002112 ORTHO05D005377 8.2e-131 471.1 362 66.6
MELO3C015704.2 Cucumis melo HOM05D002112 ORTHO05D005830 1.1e-130 470.7 384 63.3
C01p43770 Brassica napus HOM05D002112 ORTHO05D005830 1.4e-130 470.3 362 66.3
Dinv21066 Davidia involucrata HOM05D002112 ORTHO05D005830 1.4e-130 470.3 386 65.0
Eucgr.I00215 Eucalyptus grandis HOM05D002112 ORTHO05D005830 1.4e-130 470.3 365 67.1
Medtr5g088340 Medicago truncatula HOM05D002112 ORTHO05D005830 1.8e-130 469.9 384 62.5
Psat2g021160 Pisum sativum HOM05D002112 ORTHO05D005830 2.4e-130 469.5 384 63.0
unitig_748.g7486 Utricularia gibba HOM05D002112 ORTHO05D005830 2.4e-130 469.5 363 67.5
SalBow5G0693 Salvia bowleyana HOM05D002112 ORTHO05D005830 7.7e-129 464.5 385 63.9
CDE08G1601 Ceratophyllum demersum HOM05D002112 ORTHO05D005830 1.1e-127 460.7 383 63.2
Glyma.14G040300 Glycine max HOM05D002112 ORTHO05D005830 2.1e-126 456.4 385 60.8
Zm00001eb362140 Zea mays HOM05D002112 ORTHO05D005830 3.6e-126 455.7 375 63.7
Nitab4.5_0003902g0080 Nicotiana tabacum HOM05D002112 ORTHO05D005830 1.4e-125 453.8 340 67.1
Peaxi162Scf00276g01115 Petunia axillaris HOM05D002112 ORTHO05D005830 2.3e-125 453.0 384 62.8
Haze_10243 Corylus avellana HOM05D002112 ORTHO05D005830 3.3e-124 449.1 382 62.8
Phvul.008G205800 Phaseolus vulgaris HOM05D002112 ORTHO05D005830 2.8e-123 446.0 388 61.6
VMungo0647G1998 Vigna mungo HOM05D002112 ORTHO05D005830 3.1e-122 442.6 382 61.3
Duzib212G0454 Durio zibethinus HOM05D002112 ORTHO05D005830 4.1e-122 442.2 384 63.0
EL10Ac2g03438 Beta vulgaris HOM05D002112 ORTHO05D005830 3.4e-121 439.1 383 60.1
Os01g0974000 Oryza sativa ssp. japonica HOM05D002112 ORTHO05D005830 1.0e-120 437.6 308 71.8
SGA_v2.0_scaffold16G07839 Striga asiatica HOM05D002112 ORTHO05D005830 1.4e-119 433.7 495 51.1
DCAR_003742 Daucus carota HOM05D002112 ORTHO05D005830 3.2e-119 432.6 354 64.1
SEGI_07155 Sequoiadendron giganteum HOM05D002112 ORTHO05D005830 2.1e-118 429.9 334 63.2
BraA01t03533Z Brassica rapa HOM05D002112 ORTHO05D005830 1.4e-117 427.2 366 63.1
ClCG09G018870 Citrullus lanatus HOM05D002112 ORTHO05D005830 8.8e-117 424.5 464 52.2
Hma1.2p1_2907F.1_g330140 Hydrangea macrophylla HOM05D002112 ORTHO05D005830 2.6e-116 422.9 332 65.1
Ah.14g085620 Amaranthus hybridus HOM05D002112 ORTHO05D005830 1.1e-114 417.5 385 58.7
Gohir.A02G114100 Gossypium hirsutum HOM05D002112 ORTHO05D005830 4.1e-114 415.6 322 65.8
Lsat_1_v5_gn_3_102740 Lactuca sativa HOM05D002112 ORTHO05D005830 1.5e-111 407.1 379 56.7
PSO151G0006 Papaver somniferum HOM05D002112 ORTHO05D005830 2.1e-110 403.3 387 58.4
HPP92_018143 Vanilla planifolia HOM05D002112 ORTHO05D005830 1.4e-109 400.6 377 56.0
BcaB06g26098 Brassica carinata HOM05D002112 ORTHO05D005377 4.4e-108 395.6 321 62.6
vmacro12410 Vaccinium macrocarpon HOM05D002112 ORTHO05D005830 5.0e-104 382.1 271 74.5
Gohir.A08G075500 Gossypium hirsutum HOM05D002112 ORTHO05D005830 8.5e-104 381.3 283 67.5
Mapoly0038s0049 Marchantia polymorpha HOM05D002112 ORTHO05D005830 3.6e-102 375.9 344 54.4
CsaV3_7G002030 Cucumis sativus L. HOM05D002112 ORTHO05D005830 4.0e-101 372.5 286 64.7
Sed0017575 Sechium edule HOM05D002112 ORTHO05D005830 8.8e-101 371.3 284 65.1
Pp3c3_12480 Physcomitrium patens HOM05D002112 ORTHO05D005830 1.2e-100 370.9 338 54.1
Pp3c12_4060 Physcomitrium patens HOM05D002112 ORTHO05D005830 3.4e-100 369.4 339 53.4
ClCG02G003310 Citrullus lanatus HOM05D002112 ORTHO05D005830 8.3e-99 364.8 309 62.5
AT3G20320 Arabidopsis thaliana HOM05D002112 ORTHO05D005830 1.4e-98 364.0 283 64.7
SMO356G0377 Selaginella moellendorffii HOM05D002112 ORTHO05D005830 7.0e-98 361.7 306 58.5
Lj1A1151T82 Lonicera japonica HOM05D002112 ORTHO05D005830 2.0e-97 360.1 289 64.0
Cfa004646 Carpinus fangiana HOM05D002112 ORTHO05D005830 3.8e-96 355.9 321 59.5
AagrBONN_evm.TU.Sc2ySwM_362.2463 Anthoceros agrestis HOM05D002112 ORTHO05D005830 7.2e-95 351.7 335 55.2
MSTRG.24953 Avicennia marina HOM05D002112 ORTHO05D005830 9.4e-95 351.3 272 65.1
Oeu010462.1 Olea europaea HOM05D002112 ORTHO05D005830 9.4e-95 351.3 250 69.2
TAR623G0168 Trochodendron aralioides HOM05D002112 ORTHO05D005830 1.2e-94 350.9 235 75.3
CBR_g24153 Chara braunii HOM05D002112 ORTHO05D005830 1.4e-93 347.4 309 54.7
A01p34360 Brassica napus HOM05D002112 ORTHO05D005830 4.0e-93 345.9 267 65.5
Zm00001eb139760 Zea mays HOM05D002112 ORTHO05D005830 2.6e-92 343.2 262 66.0
MD13G1257900 Malus domestica HOM05D002112 ORTHO05D005830 7.5e-92 341.7 294 62.2
SHI29120 Sapria himalayana HOM05D002112 ORTHO05D005830 8.6e-88 328.2 363 49.9
Psat5g187680 Pisum sativum HOM05D002112 ORTHO05D005830 4.7e-86 322.4 253 62.8
Hund03181 Selenicereus undatus HOM05D002112 ORTHO05D005830 1.3e-83 314.3 277 61.4
Peaxi162Scf00580g00069 Petunia axillaris HOM05D002112 ORTHO05D005830 8.3e-83 311.6 231 67.5
MCO07G431 Micromonas commoda HOM05D002112 ORTHO05D005830 9.8e-76 288.1 316 46.5
QL02p069440 Quercus lobata HOM05D002112 ORTHO05D005830 9.2e-74 281.6 216 63.0
Cre16.g694400 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D005830 3.4e-68 263.1 300 46.7
PRCOL_00002736 Prasinoderma coloniale HOM05D002112 ORTHO05D005830 4.6e-65 252.7 302 43.0
Sc07g0004100 Simmondsia chinensis HOM05D002112 ORTHO05D005830 1.2e-54 218.0 173 62.4
Glyma.02G275800 Glycine max HOM05D002112 ORTHO05D005830 9.0e-45 185.3 175 56.6
Cpa.g.c39485 Carica papaya HOM05D002112 ORTHO05D005830 2.0e-44 184.1 127 70.9
TAR623G1172 Trochodendron aralioides HOM05D002112 ORTHO05D005830 3.4e-44 183.3 129 76.7
Oeu010464.1 Olea europaea HOM05D002112 ORTHO05D005830 1.9e-34 151.0 104 76.9
AUR62038882 Chenopodium quinoa HOM05D002112 ORTHO05D005830 1.6e-33 147.9 97 81.4
Lj1A1151T83 Lonicera japonica HOM05D002112 ORTHO05D005830 3.5e-33 146.7 97 80.4
Oeu037772.1 Olea europaea HOM05D002112 ORTHO05D005830 4.6e-33 146.4 103 76.7
FAN28G2322 Fragaria x ananassa HOM05D002112 ORTHO05D005830 5.1e-32 142.9 103 72.8
Gohir.A08G072300 Gossypium hirsutum HOM05D002112 ORTHO05D010805 3.5e-25 120.2 102 58.8
MD13G1258100 Malus domestica HOM05D002112 ORTHO05D005830 2.8e-22 110.5 77 72.7
A01p34370 Brassica napus HOM05D000233 ORTHO05D000020 3.9e-16 90.1 59 74.6
Peaxi162Scf00036g02121 Petunia axillaris HOM05D002112 ORTHO05D005830 1.5e-15 88.2 61 77.0
Sc09g0004030 Simmondsia chinensis HOM05D005136 ORTHO05D006619 5.3e-13 79.7 70 57.1
Cre09.g395028 Chlamydomonas reinhardtii HOM05D002112 ORTHO05D143200 1.3e-11 75.1 105 40.0
Sc07g0004110 Simmondsia chinensis HOM05D002112 ORTHO05D010805 2.1e-09 67.8 49 65.3
SEGI_04192 Sequoiadendron giganteum HOM05D002112 ORTHO05D384887 4.8e-06 56.6 58 53.4


User provided reference genes

Program Settings