Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g21259_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 1.5e-39 165.6 80 100.0
MBI13_g23009_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 1.5e-39 165.6 80 100.0
MBI19_g44006_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 2.7e-28 128.3 62 100.0
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 6.1e-28 127.1 63 98.4
MBI19_g34779_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 3.3e-26 121.3 62 96.8
MBI19_g46141_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 4.2e-21 104.4 50 100.0
CDE02G4547 Ceratophyllum demersum HOM05D003757 ORTHO05D004892 7.2e-21 103.6 61 80.3
Ciclev10008413m.g Citrus clementina HOM05D003757 ORTHO05D004892 4.7e-20 100.9 61 75.4
Hma1.2p1_0193F.1_g083830 Hydrangea macrophylla HOM05D003757 ORTHO05D004892 4.7e-20 100.9 61 82.0
Hma1.2p1_1804F.1_g303070 Hydrangea macrophylla HOM05D003757 ORTHO05D004892 4.7e-20 100.9 61 82.0
GSVIVG01014713001 Vitis vinifera HOM05D003757 ORTHO05D004892 1.4e-19 99.4 61 75.4
Dinv40877 Davidia involucrata HOM05D003757 ORTHO05D004892 2.3e-19 98.6 61 80.3
MBI19_g24049_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 6.7e-19 97.1 50 94.0
Duzib213G1084 Durio zibethinus HOM05D003757 ORTHO05D004892 1.1e-18 96.3 61 70.5
Migut.M01637 Erythranthe guttata HOM05D003757 ORTHO05D004892 1.1e-18 96.3 61 75.4
CSS0016659 Camellia sinensis var. sinensis HOM05D003757 ORTHO05D004892 2.0e-18 95.5 61 75.4
Rhsim04G0011300 Rhododendron simsii HOM05D003757 ORTHO05D004892 2.0e-18 95.5 61 73.8
Nn6g34494 Nelumbo nucifera HOM05D003757 ORTHO05D004892 2.6e-18 95.1 61 73.8
THA.LOC104810294 Tarenaya hassleriana HOM05D003757 ORTHO05D004892 2.6e-18 95.1 61 72.1
Gohir.A01G093100 Gossypium hirsutum HOM05D003757 ORTHO05D004892 9.7e-18 93.2 61 70.5
Peaxi162Scf00006g00525 Petunia axillaris HOM05D003757 ORTHO05D004892 9.7e-18 93.2 61 73.8
Gohir.D11G233540 Gossypium hirsutum HOM05D003757 ORTHO05D004892 1.3e-17 92.8 62 67.7
vmacro09632 Vaccinium macrocarpon HOM05D003757 ORTHO05D004892 1.3e-17 92.8 61 72.1
Oeu019704.1 Olea europaea HOM05D003757 ORTHO05D004892 1.7e-17 92.4 61 72.1
Actinidia35411 Actinidia chinensis HOM05D003757 ORTHO05D004892 2.2e-17 92.0 61 72.1
Cc05_g15140 Coffea canephora HOM05D003757 ORTHO05D004892 2.2e-17 92.0 61 72.1
Gohir.D01G077600 Gossypium hirsutum HOM05D003757 ORTHO05D004892 2.2e-17 92.0 61 68.9
Gorai.012G013700 Gossypium raimondii HOM05D003757 ORTHO05D004892 2.2e-17 92.0 61 68.9
PGR031G0773 Punica granatum HOM05D003757 ORTHO05D004892 2.2e-17 92.0 59 72.9
MSTRG.7008 Avicennia marina HOM05D003757 ORTHO05D004892 2.8e-17 91.7 61 72.1
COL.COLO4_07724 Corchorus olitorius HOM05D003757 ORTHO05D004892 2.8e-17 91.7 61 67.2
SalBow8G3474 Salvia bowleyana HOM05D003757 ORTHO05D004892 2.8e-17 91.7 61 72.1
SalBow8G4572 Salvia bowleyana HOM05D003757 ORTHO05D004892 2.8e-17 91.7 61 72.1
HPP92_020435 Vanilla planifolia HOM05D003757 ORTHO05D004892 3.7e-17 91.3 61 65.6
Gorai.011G064100 Gossypium raimondii HOM05D003757 ORTHO05D004892 4.8e-17 90.9 74 58.1
Aa31LG2G9840 Aethionema arabicum HOM05D003757 ORTHO05D004892 6.3e-17 90.5 61 70.5
CsaV3_3G004150 Cucumis sativus L. HOM05D003757 ORTHO05D004892 6.3e-17 90.5 59 72.9
Nitab4.5_0000163g0080 Nicotiana tabacum HOM05D003757 ORTHO05D004892 6.3e-17 90.5 61 70.5
Nitab4.5_0000756g0040 Nicotiana tabacum HOM05D003757 ORTHO05D004892 6.3e-17 90.5 61 70.5
arahy.Tifrunner.gnm1.ann1.Y133TV Arachis hypogaea HOM05D003757 ORTHO05D004892 8.2e-17 90.1 59 74.6
ClCG10G004370 Citrullus lanatus HOM05D003757 ORTHO05D004892 8.2e-17 90.1 59 74.6
Gorai.004G086100 Gossypium raimondii HOM05D003757 ORTHO05D004892 8.2e-17 90.1 61 67.2
Lj6g0026056 Lotus japonicus HOM05D003757 ORTHO05D004892 8.2e-17 90.1 59 71.2
Os02g0723600 Oryza sativa ssp. japonica HOM05D003757 ORTHO05D004892 8.2e-17 90.1 61 63.9
Zm00001eb209340 Zea mays HOM05D003757 ORTHO05D004892 8.2e-17 90.1 61 63.9
Lalb_Chr25g0279851 Lupinus albus HOM05D003757 ORTHO05D004892 1.1e-16 89.7 57 73.7
Psat5g165720 Pisum sativum HOM05D003757 ORTHO05D004892 1.1e-16 89.7 59 67.8
Ca_02557_v3 Cicer arietinum L. HOM05D003757 ORTHO05D004892 1.4e-16 89.4 59 71.2
Ca_12444_v3 Cicer arietinum L. HOM05D003757 ORTHO05D004892 1.4e-16 89.4 59 71.2
SEGI_01911 Sequoiadendron giganteum HOM05D003757 ORTHO05D004892 1.4e-16 89.4 61 68.9
TWI38G0906 Tripterygium wilfordii HOM05D003757 ORTHO05D004892 1.4e-16 89.4 61 70.5
CANSAT11G0495 Cannabis sativa HOM05D003757 ORTHO05D004892 1.8e-16 89.0 59 67.8
MELO3C014111.2 Cucumis melo HOM05D003757 ORTHO05D004892 1.8e-16 89.0 59 72.9
Potri.001G369500 Populus trichocarpa HOM05D003757 ORTHO05D004892 1.8e-16 89.0 61 68.9
Prupe.6G025800 Prunus persica HOM05D003757 ORTHO05D004892 1.8e-16 89.0 58 74.1
Actinidia37141 Actinidia chinensis HOM05D003757 ORTHO05D004892 2.4e-16 88.6 61 70.5
ATR0751G084 Amborella trichopoda HOM05D003757 ORTHO05D004892 2.4e-16 88.6 72 63.9
Gohir.A09G086764 Gossypium hirsutum HOM05D003757 ORTHO05D004892 2.4e-16 88.6 61 67.2
Gohir.D13G088800 Gossypium hirsutum HOM05D003757 ORTHO05D004892 2.4e-16 88.6 61 67.2
Lsat_1_v5_gn_7_114200 Lactuca sativa HOM05D003757 ORTHO05D004892 2.4e-16 88.6 61 67.2
Oeu046941.1 Olea europaea HOM05D003757 ORTHO05D004892 2.4e-16 88.6 61 68.9
Os03g0295400 Oryza sativa ssp. japonica HOM05D003757 ORTHO05D004892 2.4e-16 88.6 61 65.6
arahy.Tifrunner.gnm1.ann1.1GY6ZX Arachis hypogaea HOM05D003757 ORTHO05D004892 3.1e-16 88.2 59 72.9
CAN.G1469.9 Capsicum annuum HOM05D003757 ORTHO05D004892 3.1e-16 88.2 61 67.2
FAN11G0718 Fragaria x ananassa HOM05D003757 ORTHO05D004892 3.1e-16 88.2 58 75.9
FAN16G2411 Fragaria x ananassa HOM05D003757 ORTHO05D004892 3.1e-16 88.2 58 75.9
FAN25G3217 Fragaria x ananassa HOM05D003757 ORTHO05D004892 3.1e-16 88.2 58 75.9
Gorai.003G104500 Gossypium raimondii HOM05D003757 ORTHO05D004892 3.1e-16 88.2 61 67.2
Lj1C892T11 Lonicera japonica HOM05D003757 ORTHO05D004892 3.1e-16 88.2 61 70.5
MD03G1029700 Malus domestica HOM05D003757 ORTHO05D004892 3.1e-16 88.2 58 72.4
RcHm_v2.0_Chr5g0076331 Rosa chinensis HOM05D003757 ORTHO05D004892 3.1e-16 88.2 58 75.9
Gohir.D03G069702 Gossypium hirsutum HOM05D003757 ORTHO05D004892 4.1e-16 87.8 59 69.5
PGSC0003DMG400029791 Solanum tuberosum HOM05D003757 ORTHO05D004892 4.1e-16 87.8 61 65.6
arahy.Tifrunner.gnm1.ann1.LZR8G3 Arachis hypogaea HOM05D003757 ORTHO05D004892 5.3e-16 87.4 59 71.2
Manes.15G058300 Manihot esculenta HOM05D003757 ORTHO05D004892 5.3e-16 87.4 61 65.6
Sabra16G0242400 Salix brachista HOM05D003757 ORTHO05D004892 5.3e-16 87.4 61 67.2
Gohir.D03G046200 Gossypium hirsutum HOM05D003757 ORTHO05D004892 7.0e-16 87.0 62 64.5
Gohir.D03G099501 Gossypium hirsutum HOM05D003757 ORTHO05D004892 7.0e-16 87.0 61 65.6
Gorai.009G365400 Gossypium raimondii HOM05D003757 ORTHO05D004892 7.0e-16 87.0 61 65.6
Glyma.08G331900 Glycine max HOM05D003757 ORTHO05D004892 9.1e-16 86.7 59 67.8
HanXRQChr01g0009211 Helianthus annuus HOM05D003757 ORTHO05D004892 9.1e-16 86.7 61 63.9
SGA_v2.0_scaffold168G38570 Striga asiatica HOM05D003757 ORTHO05D004892 9.1e-16 86.7 61 65.6
TPR.G17939 Trifolium pratense HOM05D003757 ORTHO05D004892 1.2e-15 86.3 59 66.1
FvH4_3g42690 Fragaria vesca HOM05D003757 ORTHO05D004892 1.6e-15 85.9 58 74.1
MD11G1033100 Malus domestica HOM05D003757 ORTHO05D004892 1.6e-15 85.9 58 70.7
Solyc12g015780.2 Solanum lycopersicum HOM05D003757 ORTHO05D004892 1.6e-15 85.9 61 63.9
Sopen12g007690 Solanum pennellii HOM05D003757 ORTHO05D004892 1.6e-15 85.9 61 63.9
Glyma.18G075300 Glycine max HOM05D003757 ORTHO05D004892 2.0e-15 85.5 59 66.1
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 3.5e-15 84.7 42 97.6
HanXRQChr11g0334371 Helianthus annuus HOM05D003757 ORTHO05D004892 4.5e-15 84.3 61 63.9
Medtr3g060690 Medicago truncatula HOM05D003757 ORTHO05D004892 4.5e-15 84.3 59 66.1
PSO017G7047 Papaver somniferum HOM05D003757 ORTHO05D004892 4.5e-15 84.3 61 63.9
PSO478G0750 Papaver somniferum HOM05D003757 ORTHO05D004892 4.5e-15 84.3 61 63.9
Pp3c5_15220 Physcomitrium patens HOM05D003757 ORTHO05D004892 4.5e-15 84.3 61 59.0
Aqoxy5G01346 Aquilegia oxysepala HOM05D003757 ORTHO05D004892 7.7e-15 83.6 69 63.8
Cpa.g.sc12.126 Carica papaya HOM05D003757 ORTHO05D004892 1.0e-14 83.2 61 63.9
Atru.chr2.3737 Acer truncatum HOM05D003757 ORTHO05D004892 1.3e-14 82.8 61 67.2
Atru.chr2.3740 Acer truncatum HOM05D003757 ORTHO05D004892 1.3e-14 82.8 61 67.2
SMO119G0435 Selaginella moellendorffii HOM05D003757 ORTHO05D004892 1.7e-14 82.4 74 52.7
CDE01G0743 Ceratophyllum demersum HOM05D003757 ORTHO05D004892 3.8e-14 81.3 50 76.0
CiPaw.11G205500 Carya illinoinensis HOM05D003757 ORTHO05D004892 6.5e-14 80.5 59 62.7
Eucgr.F04451 Eucalyptus grandis HOM05D003757 ORTHO05D004892 6.5e-14 80.5 59 59.3
Cfa016916 Carpinus fangiana HOM05D003757 ORTHO05D004892 8.5e-14 80.1 59 62.7
Haze_09845 Corylus avellana HOM05D003757 ORTHO05D004892 8.5e-14 80.1 59 62.7
MBI13_g38594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D004892 8.5e-14 80.1 50 80.0
EL10Ac4g07528 Beta vulgaris HOM05D003757 ORTHO05D004892 1.1e-13 79.7 68 60.3
QL08p003504 Quercus lobata HOM05D003757 ORTHO05D004892 1.1e-13 79.7 63 61.9
Sc07g0008030 Simmondsia chinensis HOM05D003757 ORTHO05D004892 1.5e-13 79.3 61 63.9
Hund23033 Selenicereus undatus HOM05D003757 ORTHO05D004892 1.9e-13 79.0 61 65.6
Thecc.07G009900 Theobroma cacao HOM05D003757 ORTHO05D004892 1.9e-13 79.0 50 70.0
A01p29390 Brassica napus HOM05D003757 ORTHO05D004892 2.5e-13 78.6 61 60.7
BraA01t03073Z Brassica rapa HOM05D003757 ORTHO05D004892 2.5e-13 78.6 61 60.7
Mapoly0091s0022 Marchantia polymorpha HOM05D003757 ORTHO05D004892 2.5e-13 78.6 61 59.0
AUR62035664 Chenopodium quinoa HOM05D003757 ORTHO05D004892 3.2e-13 78.2 61 67.2
ECA236G4551 Erigeron canadensis HOM05D003757 ORTHO05D004892 4.2e-13 77.8 61 59.0
CBR_g51921 Chara braunii HOM05D003757 ORTHO05D004892 5.5e-13 77.4 61 60.7
AUR62017143 Chenopodium quinoa HOM05D003757 ORTHO05D004892 5.5e-13 77.4 61 65.6
BcaC09g49388 Brassica carinata HOM05D003757 ORTHO05D004892 7.2e-13 77.0 61 57.4
C01p37170 Brassica napus HOM05D003757 ORTHO05D004892 7.2e-13 77.0 61 57.4
BolC1t03686H Brassica oleracea HOM05D003757 ORTHO05D004892 7.2e-13 77.0 61 57.4
Sed0017208 Sechium edule HOM05D003757 ORTHO05D004892 7.2e-13 77.0 50 74.0
AagrBONN_evm.TU.Sc2ySwM_344.776 Anthoceros agrestis HOM05D003757 ORTHO05D004892 1.2e-12 76.3 59 61.0
Phvul.006G053600 Phaseolus vulgaris HOM05D003757 ORTHO05D004892 1.2e-12 76.3 59 61.0
VMungo0540G1054 Vigna mungo HOM05D003757 ORTHO05D004892 1.6e-12 75.9 59 61.0
Carub.0007s3207 Capsella rubella HOM05D003757 ORTHO05D004892 2.1e-12 75.5 57 61.4
unitig_32.g10954 Utricularia gibba HOM05D003757 ORTHO05D004892 2.1e-12 75.5 54 64.8
Thhalv10025407m.g Eutrema salsugineum HOM05D003757 ORTHO05D004892 2.7e-12 75.1 59 59.3
AL2G15980 Arabidopsis lyrata HOM05D003757 ORTHO05D004892 3.6e-12 74.7 59 57.6
A09p17200 Brassica napus HOM05D003757 ORTHO05D004892 3.6e-12 74.7 57 59.6
C09p21330 Brassica napus HOM05D003757 ORTHO05D004892 3.6e-12 74.7 57 59.6
BolC9t55041H Brassica oleracea HOM05D003757 ORTHO05D004892 3.6e-12 74.7 57 59.6
AT1G60620 Arabidopsis thaliana HOM05D003757 ORTHO05D004892 4.7e-12 74.3 59 55.9
BcaC04g22274 Brassica carinata HOM05D003757 ORTHO05D004892 4.7e-12 74.3 57 59.6
AL2G15670 Arabidopsis lyrata HOM05D003757 ORTHO05D004892 6.1e-12 73.9 58 62.1
Sp2g04130 Schrenkiella parvula HOM05D003757 ORTHO05D004892 6.1e-12 73.9 61 55.7
BcaNung05342 Brassica carinata HOM05D003757 ORTHO05D004892 8.0e-12 73.6 57 57.9
BraA09t37353Z Brassica rapa HOM05D003757 ORTHO05D004892 1.4e-11 72.8 57 57.9
Ah.10g038210 Amaranthus hybridus HOM05D003757 ORTHO05D004892 1.8e-11 72.4 61 57.4
Hma1.2p1_1094F.1_g256400 Hydrangea macrophylla HOM05D003757 ORTHO05D004892 1.8e-11 72.4 51 72.5
CARHR052350 Cardamine hirsuta HOM05D003757 ORTHO05D004892 3.0e-11 71.6 60 56.7
BcaC06g31813 Brassica carinata HOM05D003757 ORTHO05D004892 4.0e-11 71.2 61 54.1
Gorai.006G029900 Gossypium raimondii HOM05D003757 ORTHO05D004892 6.7e-11 70.5 51 64.7
BcaB04g20277 Brassica carinata HOM05D003757 ORTHO05D004892 1.1e-10 69.7 62 56.5
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 2.0e-10 68.9 42 81.0
Gohir.D04G111900 Gossypium hirsutum HOM05D003757 ORTHO05D004892 2.6e-10 68.6 49 63.3
Gohir.D02G157850 Gossypium hirsutum HOM05D003757 ORTHO05D036296 4.4e-10 67.8 45 66.7
MCO11G247 Micromonas commoda HOM05D003757 ORTHO05D004892 5.7e-10 67.4 58 51.7
AT1G60850 Arabidopsis thaliana HOM05D003757 ORTHO05D004892 1.7e-09 65.9 58 55.2
VMungo0251G3155 Vigna mungo HOM05D003757 ORTHO05D036296 1.7e-09 65.9 57 57.9
Thhalv10023529m.g Eutrema salsugineum HOM05D003757 ORTHO05D004892 2.2e-09 65.5 57 54.4
CARHR051870 Cardamine hirsuta HOM05D003757 ORTHO05D004892 7.0e-08 60.5 57 52.6
C04p25880 Brassica napus HOM05D003757 ORTHO05D004892 1.2e-07 59.7 49 55.1
C05p51040 Brassica napus HOM05D003757 ORTHO05D004892 1.2e-07 59.7 49 55.1
BolC4t24221H Brassica oleracea HOM05D003757 ORTHO05D004892 1.2e-07 59.7 49 55.1
MBI03_g43600_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 1.6e-07 59.3 29 100.0
PRCOL_00005405 Prasinoderma coloniale HOM05D003757 ORTHO05D004892 7.7e-07 57.0 56 46.4
Carub.0002s0447 Capsella rubella HOM05D003757 ORTHO05D004892 8.5e-06 53.5 59 45.8


User provided reference genes

Program Settings