Gene: AT1G60850
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G60850
- Transcript Identifier AT1G60850.2
- Gene Type Coding gene
- Location Chr1 : 22398078-22400155 : negative
Gene Family Information
- ID HOM05D003757
- #Genes/#Species 183/99
- Phylogenetic origin
- ID ORTHO05D004892
- #Genes/#Species 168/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G60850.2
- symbol ATRPAC42
- uniprot Q9C6C2
Descriptions
- Description DNA-directed RNA polymerase family protein
- Computational description ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 1331 Blast hits to 1329 proteins in 354 species: Archae - 245; Bacteria - 1; Metazoa - 283; Fungi - 347; Plants - 107; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
- Computational description ATRPAC42; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: RNA polymerase I subunit 43 (TAIR:AT1G60620.1); Has 1346 Blast hits to 1344 proteins in 356 species: Archae - 246; Bacteria - 1; Metazoa - 283; Fungi - 361; Plants - 107; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006360 | IEA | GOA Database | transcription by RNA polymerase I | |
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated | |
| GO:0006383 | IEA | GOA Database | transcription by RNA polymerase III |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0001056 | IBA IEA | Gene Ontology | RNA polymerase III activity | 1 |
| GO:0001056 | IEA | InterPro | RNA polymerase III activity | |
| GO:0001054 | IBA IEA | Gene Ontology | RNA polymerase I activity | 1 |
| GO:0001054 | IEA | InterPro | RNA polymerase I activity | |
| GO:0003899 | IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IBA | Gene Ontology | DNA-directed 5'-3' RNA polymerase activity | 1 |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0046983 | IEA | Gene Ontology | protein dimerization activity | |
| GO:0046983 | IEA | InterPro | protein dimerization activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | IDA | GOA Database | nucleolus | |
| GO:0005730 | HDA | Gene Ontology | nucleolus | 2 |
| GO:0005736 | IBA | Gene Ontology | RNA polymerase I complex | 1 |
| GO:0005666 | IBA | Gene Ontology | RNA polymerase III complex | 1 |
| GO:0005634 | ISM | Gene Ontology | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036603 | RNA polymerase, RBP11-like subunit |
| IPR011262 | DNA-directed RNA polymerase, insert domain |
| IPR011263 | DNA-directed RNA polymerase, RpoA/D/Rpb3-type |
| IPR036643 | DNA-directed RNA polymerase, insert domain superfamily |
| IPR033901 | DNA-directed RNA polymerases I and III subunit AC40 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |