Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g41127_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.3e-131 471.1 247 100.0
MBI11_g40802_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 6.5e-97 357.8 213 89.7
MBI11_g31491_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.4e-91 338.2 217 84.3
MBI11_g41124_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.2e-80 301.2 172 91.3
MBI04_g02075_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 2.6e-77 292.7 211 77.7
MBI11_g47761_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 3.2e-75 285.8 170 88.8
Duzib068G0251 Durio zibethinus HOM05D004958 ORTHO05D005983 2.3e-73 279.6 211 71.1
GSVIVG01019856001 Vitis vinifera HOM05D004958 ORTHO05D005983 2.3e-73 279.6 205 72.7
Nn6g34244 Nelumbo nucifera HOM05D004958 ORTHO05D005983 4.3e-72 275.4 211 69.2
Lalb_Chr07g0189581 Lupinus albus HOM05D004958 ORTHO05D005983 2.1e-71 273.1 198 70.7
Eucgr.D01919 Eucalyptus grandis HOM05D004958 ORTHO05D005983 3.1e-70 269.2 205 69.3
Lalb_Chr12g0208371 Lupinus albus HOM05D004958 ORTHO05D005983 8.9e-70 267.7 205 68.3
Lalb_Chr12g0208451 Lupinus albus HOM05D004958 ORTHO05D005983 8.9e-70 267.7 205 68.3
Thecc.03G271700 Theobroma cacao HOM05D004958 ORTHO05D005983 8.9e-70 267.7 214 68.7
Manes.01G066700 Manihot esculenta HOM05D004958 ORTHO05D005983 1.2e-69 267.3 205 69.8
CSS0008368 Camellia sinensis var. sinensis HOM05D004958 ORTHO05D005983 2.6e-69 266.2 205 67.8
Actinidia27408 Actinidia chinensis HOM05D004958 ORTHO05D005983 3.4e-69 265.8 205 69.8
DCAR_008420 Daucus carota HOM05D004958 ORTHO05D005983 7.5e-69 264.6 211 65.9
RcHm_v2.0_Chr5g0045251 Rosa chinensis HOM05D004958 ORTHO05D005983 7.5e-69 264.6 198 67.7
Glyma.07G082900 Glycine max HOM05D004958 ORTHO05D005983 9.8e-69 264.2 205 68.3
Lsat_1_v5_gn_6_87641 Lactuca sativa HOM05D004958 ORTHO05D005983 1.7e-68 263.5 198 69.2
Nitab4.5_0001586g0220 Nicotiana tabacum HOM05D004958 ORTHO05D005983 3.7e-68 262.3 198 68.7
Hund11528 Selenicereus undatus HOM05D004958 ORTHO05D005983 6.4e-68 261.5 203 68.0
Nitab4.5_0002553g0040 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.4e-67 260.4 198 68.2
VMungo0331G1538 Vigna mungo HOM05D004958 ORTHO05D005983 1.9e-67 260.0 205 66.8
Gohir.D11G021000 Gossypium hirsutum HOM05D004958 ORTHO05D005983 2.4e-67 259.6 205 67.8
Gorai.007G022300 Gossypium raimondii HOM05D004958 ORTHO05D005983 5.4e-67 258.5 205 67.3
Phvul.010G049100 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 5.4e-67 258.5 205 65.9
Potri.001G110000 Populus trichocarpa HOM05D004958 ORTHO05D005983 7.0e-67 258.1 236 59.3
Nitab4.5_0003994g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 9.2e-67 257.7 198 67.7
Gohir.A11G021300 Gossypium hirsutum HOM05D004958 ORTHO05D005983 1.6e-66 256.9 205 67.3
Medtr5g058150 Medicago truncatula HOM05D004958 ORTHO05D005983 1.6e-66 256.9 205 64.4
Phvul.009G080900 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 1.6e-66 256.9 205 65.4
Prupe.6G131000 Prunus persica HOM05D004958 ORTHO05D005983 1.6e-66 256.9 224 63.8
Hma1.2p1_0514F.1_g170070 Hydrangea macrophylla HOM05D004958 ORTHO05D005983 4.6e-66 255.4 205 66.3
Ciclev10021851m.g Citrus clementina HOM05D004958 ORTHO05D005983 7.8e-66 254.6 205 65.4
FvH4_3g25070 Fragaria vesca HOM05D000097 ORTHO05D005983 1.0e-65 254.2 200 66.0
Lj3g0000848 Lotus japonicus HOM05D004958 ORTHO05D005983 1.0e-65 254.2 205 65.4
FvH4_7g07500 Fragaria vesca HOM05D004958 ORTHO05D005983 1.3e-65 253.8 201 65.2
Ca_05359_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 2.3e-65 253.1 198 65.2
arahy.Tifrunner.gnm1.ann1.BCQ50G Arachis hypogaea HOM05D004958 ORTHO05D005983 3.0e-65 252.7 199 67.3
Glyma.03G021100 Glycine max HOM05D004958 ORTHO05D005983 3.9e-65 252.3 228 61.8
Atru.chr12.1358 Acer truncatum HOM05D004958 ORTHO05D005983 8.6e-65 251.1 212 63.7
FAN06G2073 Fragaria x ananassa HOM05D004958 ORTHO05D005983 8.6e-65 251.1 201 64.7
FAN10G1939 Fragaria x ananassa HOM05D004958 ORTHO05D005983 8.6e-65 251.1 201 64.7
Nitab4.5_0003113g0020 Nicotiana tabacum HOM05D004958 ORTHO05D005983 1.1e-64 250.8 198 65.7
HPP92_003759 Vanilla planifolia HOM05D004958 ORTHO05D005983 1.1e-64 250.8 206 65.0
FAN01G2068 Fragaria x ananassa HOM05D004958 ORTHO05D005983 1.5e-64 250.4 204 63.7
PSO782G2900 Papaver somniferum HOM05D004958 ORTHO05D005983 1.9e-64 250.0 195 67.7
Ca_24641_v3 Cicer arietinum L. HOM05D004958 ORTHO05D005983 2.5e-64 249.6 198 64.6
SGA_v2.0_scaffold196G40881 Striga asiatica HOM05D004958 ORTHO05D005983 9.5e-64 247.7 205 63.9
Psat0s646g0120 Pisum sativum HOM05D004958 ORTHO05D005983 1.2e-63 247.3 198 64.6
MSTRG.1893 Avicennia marina HOM05D004958 ORTHO05D005983 1.6e-63 246.9 205 64.9
ClCG08G000800 Citrullus lanatus HOM05D004958 ORTHO05D005983 2.1e-63 246.5 205 62.9
PSO478G4928 Papaver somniferum HOM05D004958 ORTHO05D005983 2.1e-63 246.5 195 67.2
Prupe.8G125000 Prunus persica HOM05D004958 ORTHO05D005983 2.8e-63 246.1 215 64.7
Peaxi162Scf01294g00034 Petunia axillaris HOM05D004958 ORTHO05D005983 4.7e-63 245.4 198 65.2
Sed0017231 Sechium edule HOM05D004958 ORTHO05D005983 4.7e-63 245.4 205 62.9
FAN03G3010 Fragaria x ananassa HOM05D004958 ORTHO05D005983 8.1e-63 244.6 201 63.2
TPR.G27805 Trifolium pratense HOM05D004958 ORTHO05D005983 8.1e-63 244.6 204 64.2
PGSC0003DMG400026921 Solanum tuberosum HOM05D004958 ORTHO05D005983 1.8e-62 243.4 198 65.7
Migut.E01294 Erythranthe guttata HOM05D004958 ORTHO05D005983 3.1e-62 242.7 205 62.4
MD03G1146200 Malus domestica HOM05D004958 ORTHO05D005983 5.2e-62 241.9 198 66.7
PGR031G1609 Punica granatum HOM05D004958 ORTHO05D005983 5.2e-62 241.9 206 66.0
Solyc06g073120.4 Solanum lycopersicum HOM05D004958 ORTHO05D005983 8.9e-62 241.1 198 64.6
Aqoxy5G02043 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 2.6e-61 239.6 225 60.9
MELO3C019927.2 Cucumis melo HOM05D004958 ORTHO05D005983 2.6e-61 239.6 205 61.5
ATR0757G162 Amborella trichopoda HOM05D004958 ORTHO05D005983 5.8e-61 238.4 205 62.9
Sopen06g029470 Solanum pennellii HOM05D004958 ORTHO05D005983 5.8e-61 238.4 198 64.1
TWI81G1011 Tripterygium wilfordii HOM05D004958 ORTHO05D005983 1.7e-60 236.9 215 60.9
CAN.G65.155 Capsicum annuum HOM05D004958 ORTHO05D005983 2.9e-60 236.1 198 63.1
EL10Ac5g12729 Beta vulgaris HOM05D004958 ORTHO05D005983 8.3e-60 234.6 200 64.0
Ah.12g057600 Amaranthus hybridus HOM05D004958 ORTHO05D005983 1.1e-59 234.2 208 60.1
ECA240G3664 Erigeron canadensis HOM05D004958 ORTHO05D005983 2.4e-59 233.0 204 60.3
CsaV3_5G039810 Cucumis sativus L. HOM05D004958 ORTHO05D005983 3.2e-59 232.6 236 54.7
THA.LOC104823571 Tarenaya hassleriana HOM05D004958 ORTHO05D005983 9.2e-59 231.1 200 59.0
vmacro13919 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.6e-58 230.3 205 62.4
SEGI_09748 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 4.6e-58 228.8 197 60.4
COL.COLO4_09338 Corchorus olitorius HOM05D001926 ORTHO05D002121 1.3e-57 227.3 211 62.6
FAN11G1832 Fragaria x ananassa HOM05D000097 ORTHO05D005983 1.2e-55 220.7 220 56.8
Os09g0525200 Oryza sativa ssp. japonica HOM05D004958 ORTHO05D005983 4.7e-55 218.8 200 60.5
Medtr6g075250 Medicago truncatula HOM05D004958 ORTHO05D005983 1.1e-54 217.6 205 56.1
AL1G24110 Arabidopsis lyrata HOM05D004958 ORTHO05D005983 8.9e-54 214.5 199 57.3
Rhsim07G0094600 Rhododendron simsii HOM05D004958 ORTHO05D005983 5.8e-53 211.8 180 65.0
CARHR012940 Cardamine hirsuta HOM05D004958 ORTHO05D005983 6.4e-52 208.4 199 54.3
AT1G12650 Arabidopsis thaliana HOM05D004958 ORTHO05D005983 8.4e-52 208.0 201 56.2
Cfa012106 Carpinus fangiana HOM05D004958 ORTHO05D005983 1.1e-51 207.6 215 56.7
Sp1g11240 Schrenkiella parvula HOM05D004958 ORTHO05D005983 2.4e-51 206.5 207 53.6
SalBow7G2511 Salvia bowleyana HOM05D004958 ORTHO05D005983 2.7e-50 203.0 190 60.0
Carub.0001s1234 Capsella rubella HOM05D004958 ORTHO05D005983 6.0e-50 201.8 206 52.9
BolC8t52265H Brassica oleracea HOM05D004958 ORTHO05D005983 7.8e-50 201.4 229 50.2
vmacro12796 Vaccinium macrocarpon HOM05D004958 ORTHO05D005983 1.3e-49 200.7 259 48.3
BcaB08g34261 Brassica carinata HOM05D004958 ORTHO05D005983 1.7e-49 200.3 225 49.8
A09p63740 Brassica napus HOM05D004958 ORTHO05D005983 1.7e-49 200.3 229 49.8
BraA09t41722Z Brassica rapa HOM05D004958 ORTHO05D005983 1.7e-49 200.3 229 49.8
Zm00001eb103160 Zea mays HOM05D004958 ORTHO05D005983 1.7e-49 200.3 200 56.5
C08p47240 Brassica napus HOM05D004958 ORTHO05D005983 1.5e-48 197.2 235 48.9
AUR62017291 Chenopodium quinoa HOM05D004958 ORTHO05D005983 2.5e-48 196.4 165 60.6
Cc08_g14020 Coffea canephora HOM05D004958 ORTHO05D005983 7.3e-48 194.9 206 56.3
FAN21G2287 Fragaria x ananassa HOM05D000097 ORTHO05D000041 9.6e-48 194.5 181 60.8
SMO228G0196 Selaginella moellendorffii HOM05D004958 ORTHO05D005983 9.6e-48 194.5 197 52.3
MD11G1165500 Malus domestica HOM05D004958 ORTHO05D005983 1.6e-47 193.7 275 46.2
Haze_20475 Corylus avellana HOM05D004958 ORTHO05D005983 4.7e-47 192.2 272 46.3
Pp3c15_19260 Physcomitrium patens HOM05D004958 ORTHO05D005983 4.7e-47 192.2 198 53.0
QL12p017317 Quercus lobata HOM05D004958 ORTHO05D005983 1.1e-46 191.0 282 44.3
unitig_899.g14861 Utricularia gibba HOM05D004958 ORTHO05D005983 1.1e-46 191.0 227 49.8
CiPaw.12G097900 Carya illinoinensis HOM05D004958 ORTHO05D005983 1.4e-46 190.7 219 51.6
MBI11_g32389_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 1.8e-46 190.3 230 55.2
BcaC07g41688 Brassica carinata HOM05D004958 ORTHO05D005983 2.4e-46 189.9 222 49.5
AagrBONN_evm.TU.Sc2ySwM_362.2285 Anthoceros agrestis HOM05D004958 ORTHO05D005983 3.4e-45 186.0 202 51.5
Mapoly0004s0034 Marchantia polymorpha HOM05D004958 ORTHO05D005983 9.9e-45 184.5 197 50.8
Aa31LG1G2030 Aethionema arabicum HOM05D004958 ORTHO05D005983 1.3e-44 184.1 203 51.7
Sc22g0000230 Simmondsia chinensis HOM05D004958 ORTHO05D005983 3.8e-44 182.6 159 62.9
Sabra01G0083200 Salix brachista HOM05D004958 ORTHO05D005983 1.2e-42 177.6 201 53.2
CDE02G4341 Ceratophyllum demersum HOM05D004958 ORTHO05D005983 1.6e-42 177.2 129 72.9
Thhalv10008688m.g Eutrema salsugineum HOM05D004958 ORTHO05D005983 2.7e-42 176.4 173 56.1
Atru.chr12.1359 Acer truncatum HOM05D004958 ORTHO05D005983 6.2e-39 165.2 205 47.3
Eucgr.L01965 Eucalyptus grandis HOM05D004958 ORTHO05D005983 3.1e-38 162.9 123 69.9
Dinv39007 Davidia involucrata HOM05D004958 ORTHO05D005983 5.3e-38 162.2 123 71.5
AUR62010651 Chenopodium quinoa HOM05D004958 ORTHO05D005983 3.2e-35 152.9 226 44.2
MBI11_g12655_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 5.6e-32 142.1 142 62.0
CBR_g12215 Chara braunii HOM05D004958 ORTHO05D005983 2.4e-30 136.7 175 45.7
Cre09.g401663 Chlamydomonas reinhardtii HOM05D004958 ORTHO05D005983 2.2e-28 130.2 177 43.5
Phvul.009G247000 Phaseolus vulgaris HOM05D004958 ORTHO05D005983 3.5e-26 122.9 198 43.4
MBI11_g47763_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D005983 7.4e-24 115.2 123 57.7
PRCOL_00004135 Prasinoderma coloniale HOM05D004958 ORTHO05D005983 1.4e-22 110.9 180 37.2
Zm00001eb297680 Zea mays HOM05D004958 ORTHO05D005983 2.4e-22 110.2 90 62.2
Aqoxy60s002 Aquilegia oxysepala HOM05D004958 ORTHO05D005983 1.0e-20 104.8 126 51.6
Haze_08945 Corylus avellana HOM05D004958 ORTHO05D005983 1.3e-20 104.4 114 54.4
SEGI_22925 Sequoiadendron giganteum HOM05D004958 ORTHO05D005983 6.7e-17 92.0 82 58.5
TAR636G1581 Trochodendron aralioides HOM05D004958 ORTHO05D005983 1.1e-16 91.3 79 67.1
FvH4_3g24970 Fragaria vesca HOM05D004958 ORTHO05D005983 4.3e-16 89.4 94 58.5
A09p63730 Brassica napus HOM05D007482 ORTHO05D003038 1.3e-15 87.8 86 55.8
Cfa023436 Carpinus fangiana HOM05D004958 ORTHO05D005983 1.6e-15 87.4 176 30.7
QL02p071798 Quercus lobata HOM05D004958 ORTHO05D005983 5.5e-11 72.4 180 34.4
FAN11G3948 Fragaria x ananassa HOM05D004958 ORTHO05D005983 2.1e-10 70.5 62 64.5
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 2.1e-10 70.5 59 57.6
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 1.8e-09 67.4 68 57.4
Cpa.g.sc53.73 Carica papaya HOM05D004958 ORTHO05D005983 3.0e-09 66.6 43 72.1
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.1e-08 64.7 55 63.6
Zm00001eb199630 Zea mays HOM05D004958 ORTHO05D005983 1.9e-08 63.9 56 55.4
MBI11_g31961_MAGBIO Magnolia biondii HOM05D004958 ORTHO05D241456 1.6e-07 60.8 143 35.7
BcaB03g13174 Brassica carinata HOM05D004958 ORTHO05D005983 9.0e-06 55.1 43 60.5


User provided reference genes

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