Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g20312_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 1.6e-126 456.1 225 100.0
MBI01_g18876_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 1.0e-40 171.0 120 76.7
CANSAT80G2227 Cannabis sativa HOM05D000433 ORTHO05D000443 4.3e-39 165.6 120 72.5
QL04p006235 Quercus lobata HOM05D000433 ORTHO05D000443 4.3e-39 165.6 120 70.8
CiPaw.13G005400 Carya illinoinensis HOM05D000433 ORTHO05D000443 1.3e-38 164.1 120 70.8
Haze_03198 Corylus avellana HOM05D000433 ORTHO05D000443 4.8e-38 162.2 120 69.2
Lj7C571T11 Lonicera japonica HOM05D000433 ORTHO05D000443 6.3e-38 161.8 120 69.2
Hma1.2p1_0184F.1_g081210 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 1.1e-37 161.0 120 70.0
Manes.10G141300 Manihot esculenta HOM05D000433 ORTHO05D000443 1.1e-37 161.0 120 70.8
Potri.001G265400 Populus trichocarpa HOM05D000433 ORTHO05D000443 1.4e-37 160.6 120 70.0
Sabra09G0044600 Salix brachista HOM05D000433 ORTHO05D000443 1.4e-37 160.6 120 70.8
CiPaw.13G005500 Carya illinoinensis HOM05D000433 ORTHO05D000443 1.8e-37 160.2 124 67.7
Potri.009G060500 Populus trichocarpa HOM05D000433 ORTHO05D000443 1.8e-37 160.2 120 70.8
Cfa010772 Carpinus fangiana HOM05D000433 ORTHO05D000443 3.1e-37 159.5 120 70.8
Hund14182 Selenicereus undatus HOM05D000433 ORTHO05D000443 4.1e-37 159.1 120 66.7
Rhsim07G0189000 Rhododendron simsii HOM05D000433 ORTHO05D000443 5.3e-37 158.7 120 69.2
CARHR291450 Cardamine hirsuta HOM05D000433 ORTHO05D000443 6.9e-37 158.3 120 69.2
Ca_23892_v3 Cicer arietinum L. HOM05D000433 ORTHO05D000443 6.9e-37 158.3 120 70.0
CsaV3_7G031010 Cucumis sativus L. HOM05D000433 ORTHO05D000443 6.9e-37 158.3 120 68.3
Duzib268G0366 Durio zibethinus HOM05D000433 ORTHO05D000443 6.9e-37 158.3 120 70.0
TAR369G0420 Trochodendron aralioides HOM05D000433 ORTHO05D000443 6.9e-37 158.3 120 68.3
Thecc.01G410200 Theobroma cacao HOM05D000433 ORTHO05D000443 9.0e-37 157.9 120 70.0
BcaB02g08056 Brassica carinata HOM05D000433 ORTHO05D000443 1.2e-36 157.5 120 68.3
Dinv43438 Davidia involucrata HOM05D000433 ORTHO05D000443 1.2e-36 157.5 120 68.3
Carub.0005s3013 Capsella rubella HOM05D000433 ORTHO05D000443 1.5e-36 157.1 120 68.3
DCAR_022385 Daucus carota HOM05D000433 ORTHO05D000443 1.5e-36 157.1 120 69.2
PGR031G0340 Punica granatum HOM05D000433 ORTHO05D000443 1.5e-36 157.1 120 68.3
TAR623G0564 Trochodendron aralioides HOM05D000433 ORTHO05D000443 1.5e-36 157.1 120 67.5
vmacro04812 Vaccinium macrocarpon HOM05D000433 ORTHO05D000443 1.5e-36 157.1 120 68.3
Medtr8g037315 Medicago truncatula HOM05D000433 ORTHO05D000443 2.0e-36 156.8 120 70.0
arahy.Tifrunner.gnm1.ann1.GV0PL5 Arachis hypogaea HOM05D000433 ORTHO05D000443 2.6e-36 156.4 120 68.3
RcHm_v2.0_Chr1g0316311 Rosa chinensis HOM05D000433 ORTHO05D000443 2.6e-36 156.4 120 67.5
AT3G63520 Arabidopsis thaliana HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 68.3
BcaC02g10356 Brassica carinata HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 67.5
C04p29820 Brassica napus HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 67.5
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 67.5
Cc02_g28080 Coffea canephora HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 65.8
MELO3C023555.2 Cucumis melo HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 67.5
TPR.G1878 Trifolium pratense HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 66.7
GSVIVG01032103001 Vitis vinifera HOM05D000433 ORTHO05D000443 4.5e-36 155.6 120 67.5
Glyma.12G236700 Glycine max HOM05D000433 ORTHO05D000443 5.9e-36 155.2 120 67.5
Glyma.13G202200 Glycine max HOM05D000433 ORTHO05D000443 5.9e-36 155.2 120 67.5
Sp5g00060 Schrenkiella parvula HOM05D000433 ORTHO05D000443 5.9e-36 155.2 120 67.5
arahy.Tifrunner.gnm1.ann1.CX54DC Arachis hypogaea HOM05D000433 ORTHO05D000443 7.6e-36 154.8 120 67.5
Thhalv10005877m.g Eutrema salsugineum HOM05D000433 ORTHO05D000443 7.6e-36 154.8 120 67.5
FvH4_7g01130 Fragaria vesca HOM05D000433 ORTHO05D000443 7.6e-36 154.8 120 66.7
FAN01G0975 Fragaria x ananassa HOM05D000433 ORTHO05D000443 7.6e-36 154.8 120 66.7
FAN06G3200 Fragaria x ananassa HOM05D000433 ORTHO05D000443 7.6e-36 154.8 120 66.7
FAN10G2567 Fragaria x ananassa HOM05D000433 ORTHO05D000443 7.6e-36 154.8 120 66.7
Lalb_Chr03g0034111 Lupinus albus HOM05D000433 ORTHO05D000443 7.6e-36 154.8 120 67.5
AL5G46380 Arabidopsis lyrata HOM05D000433 ORTHO05D000443 1.0e-35 154.5 120 67.5
GSVIVG01032110001 Vitis vinifera HOM05D000433 ORTHO05D000443 1.3e-35 154.1 120 66.7
Sopen01g034300 Solanum pennellii HOM05D000433 ORTHO05D000443 1.7e-35 153.7 120 66.7
Gohir.A08G054300 Gossypium hirsutum HOM05D000433 ORTHO05D000443 2.2e-35 153.3 120 66.7
Gohir.D08G064000 Gossypium hirsutum HOM05D000433 ORTHO05D000443 2.2e-35 153.3 120 66.7
Gorai.004G066100 Gossypium raimondii HOM05D000433 ORTHO05D000443 2.2e-35 153.3 120 66.7
Lalb_Chr20g0107981 Lupinus albus HOM05D000433 ORTHO05D000443 2.2e-35 153.3 120 67.5
Nitab4.5_0004290g0050 Nicotiana tabacum HOM05D000433 ORTHO05D000443 2.2e-35 153.3 120 65.8
Psat4g148840 Pisum sativum HOM05D000433 ORTHO05D000443 2.2e-35 153.3 120 68.3
ClCG09G004110 Citrullus lanatus HOM05D000433 ORTHO05D000443 2.9e-35 152.9 120 65.8
Prupe.2G014700 Prunus persica HOM05D000433 ORTHO05D000443 2.9e-35 152.9 120 68.3
Sed0007420 Sechium edule HOM05D000433 ORTHO05D000443 2.9e-35 152.9 120 65.8
Solyc01g087250.3 Solanum lycopersicum HOM05D000433 ORTHO05D000443 2.9e-35 152.9 120 66.7
CAN.G219.7 Capsicum annuum HOM05D000433 ORTHO05D000443 3.8e-35 152.5 120 65.8
PSO541G1646 Papaver somniferum HOM05D000433 ORTHO05D000443 3.8e-35 152.5 120 65.8
PSO675G1923 Papaver somniferum HOM05D000433 ORTHO05D000443 3.8e-35 152.5 120 65.8
COL.COLO4_04858 Corchorus olitorius HOM05D000433 ORTHO05D000443 5.0e-35 152.1 131 62.6
Lsat_1_v5_gn_4_31520 Lactuca sativa HOM05D000433 ORTHO05D000443 5.0e-35 152.1 120 65.8
Oeu048989.1 Olea europaea HOM05D000433 ORTHO05D000443 5.0e-35 152.1 120 65.8
Ciclev10031039m.g Citrus clementina HOM05D000433 ORTHO05D000443 6.5e-35 151.8 120 64.2
THA.LOC104823025 Tarenaya hassleriana HOM05D000433 ORTHO05D000443 6.5e-35 151.8 120 66.7
Aa31LG10G17400 Aethionema arabicum HOM05D000433 ORTHO05D000443 8.4e-35 151.4 124 63.7
Eucgr.G03374 Eucalyptus grandis HOM05D000433 ORTHO05D000443 8.4e-35 151.4 120 67.5
Potri.001G265900 Populus trichocarpa HOM05D000433 ORTHO05D000443 8.4e-35 151.4 120 65.8
EL10Ac2g04335 Beta vulgaris HOM05D000433 ORTHO05D000443 1.1e-34 151.0 120 65.0
Migut.B01292 Erythranthe guttata HOM05D000433 ORTHO05D000443 1.1e-34 151.0 120 65.0
Lj3g0009657 Lotus japonicus HOM05D000433 ORTHO05D000443 1.1e-34 151.0 120 66.7
Nitab4.5_0007165g0030 Nicotiana tabacum HOM05D000433 ORTHO05D000443 1.4e-34 150.6 120 65.0
A04p00060 Brassica napus HOM05D000433 ORTHO05D000443 1.9e-34 150.2 120 65.0
BraA04t15726Z Brassica rapa HOM05D000433 ORTHO05D000443 1.9e-34 150.2 120 65.0
Oeu049497.3 Olea europaea HOM05D000433 ORTHO05D000443 1.9e-34 150.2 120 65.0
ECA234G3403 Erigeron canadensis HOM05D000433 ORTHO05D000443 2.5e-34 149.8 120 65.0
Psat4g148800 Pisum sativum HOM05D000433 ORTHO05D000443 2.5e-34 149.8 120 68.3
MSTRG.17028 Avicennia marina HOM05D000433 ORTHO05D000443 3.2e-34 149.4 120 64.2
SalBow5G2984 Salvia bowleyana HOM05D000433 ORTHO05D000443 3.2e-34 149.4 120 64.2
SalBow5G5576 Salvia bowleyana HOM05D000433 ORTHO05D000443 3.2e-34 149.4 120 64.2
Peaxi162Scf00953g00218 Petunia axillaris HOM05D000433 ORTHO05D000443 4.2e-34 149.1 120 64.2
Phvul.011G211200 Phaseolus vulgaris HOM05D000433 ORTHO05D000443 4.2e-34 149.1 120 65.0
Haze_03199 Corylus avellana HOM05D000433 ORTHO05D000443 7.2e-34 148.3 120 63.3
Haze_03200 Corylus avellana HOM05D000433 ORTHO05D000443 7.2e-34 148.3 124 64.5
Os12g0640600 Oryza sativa ssp. japonica HOM05D000433 ORTHO05D000443 7.2e-34 148.3 120 63.3
Ah.10g038810 Amaranthus hybridus HOM05D000433 ORTHO05D000443 9.3e-34 147.9 124 61.3
Oeu007851.1 Olea europaea HOM05D000433 ORTHO05D000443 9.3e-34 147.9 120 64.2
TWI73G0222 Tripterygium wilfordii HOM05D000433 ORTHO05D000443 9.3e-34 147.9 120 64.2
VMungo1127G1125 Vigna mungo HOM05D000433 ORTHO05D000443 9.3e-34 147.9 120 65.8
FAN03G3380 Fragaria x ananassa HOM05D000433 ORTHO05D000443 2.1e-33 146.7 131 61.1
Zm00001eb402840 Zea mays HOM05D000433 ORTHO05D000443 2.1e-33 146.7 120 62.5
Potri.001G265600 Populus trichocarpa HOM05D000433 ORTHO05D000443 2.7e-33 146.4 120 63.3
A09p55970 Brassica napus HOM05D000433 ORTHO05D000443 4.6e-33 145.6 120 63.3
BraA09t40999Z Brassica rapa HOM05D000433 ORTHO05D000443 4.6e-33 145.6 120 63.3
Medtr8g037290 Medicago truncatula HOM05D000433 ORTHO05D000443 6.1e-33 145.2 120 63.3
Sc14g0005050 Simmondsia chinensis HOM05D000433 ORTHO05D000443 6.1e-33 145.2 120 62.5
Aqoxy2G00193 Aquilegia oxysepala HOM05D000433 ORTHO05D000443 7.9e-33 144.8 120 62.5
C08p38950 Brassica napus HOM05D000433 ORTHO05D000443 7.9e-33 144.8 118 64.4
BolC8t51468H Brassica oleracea HOM05D000433 ORTHO05D000443 7.9e-33 144.8 118 64.4
MBI01_g18877_MAGBIO Magnolia biondii HOM05D000433 ORTHO05D000443 7.9e-33 144.8 117 71.8
MD07G1011500 Malus domestica HOM05D000433 ORTHO05D000443 1.0e-32 144.4 120 63.3
AUR62009389 Chenopodium quinoa HOM05D000433 ORTHO05D000443 1.3e-32 144.1 120 61.7
Lj9C633G15 Lonicera japonica HOM05D000433 ORTHO05D000443 1.8e-32 143.7 120 62.5
HPP92_023574 Vanilla planifolia HOM05D000433 ORTHO05D000443 1.8e-32 143.7 123 63.4
BcaC07g40898 Brassica carinata HOM05D000433 ORTHO05D000443 2.3e-32 143.3 118 63.6
Peaxi162Scf00953g00316 Petunia axillaris HOM05D000433 ORTHO05D000443 2.3e-32 143.3 120 60.0
C08p38960 Brassica napus HOM05D000433 ORTHO05D000443 3.9e-32 142.5 120 64.2
AUR62025811 Chenopodium quinoa HOM05D000433 ORTHO05D000443 3.9e-32 142.5 120 61.7
Oeu007868.2 Olea europaea HOM05D000433 ORTHO05D000443 3.9e-32 142.5 120 60.8
SGA_v2.0_scaffold119G32738 Striga asiatica HOM05D000433 ORTHO05D000443 3.9e-32 142.5 120 60.8
CANSAT80G0704 Cannabis sativa HOM05D000433 ORTHO05D000443 5.1e-32 142.1 120 61.7
CDE10G1079 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 5.1e-32 142.1 120 63.3
Lalb_Chr19g0132241 Lupinus albus HOM05D000433 ORTHO05D000443 6.7e-32 141.7 120 60.0
Rhsim07G0056200 Rhododendron simsii HOM05D000433 ORTHO05D000443 6.7e-32 141.7 120 62.5
A09p55980 Brassica napus HOM05D000433 ORTHO05D000443 8.7e-32 141.4 120 63.3
Medtr8g037275 Medicago truncatula HOM05D000433 ORTHO05D000443 8.7e-32 141.4 120 62.5
Medtr8g037310 Medicago truncatula HOM05D000433 ORTHO05D000443 1.1e-31 141.0 120 60.8
Eucgr.G03362 Eucalyptus grandis HOM05D000433 ORTHO05D000443 1.5e-31 140.6 120 60.8
Nitab4.5_0002918g0020 Nicotiana tabacum HOM05D000433 ORTHO05D000443 1.5e-31 140.6 121 59.5
Carub.0002s1722 Capsella rubella HOM05D000433 ORTHO05D000443 3.3e-31 139.4 156 50.6
AUR62044218 Chenopodium quinoa HOM05D000433 ORTHO05D000443 5.7e-31 138.7 117 61.5
PGR044G0030 Punica granatum HOM05D000433 ORTHO05D000443 5.7e-31 138.7 119 61.3
DCAR_022390 Daucus carota HOM05D000433 ORTHO05D000443 7.4e-31 138.3 120 62.5
MD02G1309700 Malus domestica HOM05D000433 ORTHO05D000443 1.6e-30 137.1 120 62.5
PGR044G0170 Punica granatum HOM05D000433 ORTHO05D000443 2.2e-30 136.7 119 58.8
CAN.G219.8 Capsicum annuum HOM05D000433 ORTHO05D000443 3.7e-30 136.0 121 58.7
QL04p006260 Quercus lobata HOM05D000433 ORTHO05D000443 3.7e-30 136.0 120 60.0
CANSAT80G1890 Cannabis sativa HOM05D000433 ORTHO05D000443 4.8e-30 135.6 122 62.3
Atru.chr11.2617 Acer truncatum HOM05D000433 ORTHO05D000443 6.3e-30 135.2 120 60.0
PGR044G1035 Punica granatum HOM05D000433 ORTHO05D000443 8.2e-30 134.8 119 58.0
MSTRG.20579 Avicennia marina HOM05D000433 ORTHO05D000443 1.4e-29 134.0 120 55.8
Sabra16G0163100 Salix brachista HOM05D000433 ORTHO05D000443 2.4e-29 133.3 176 46.6
BcaB08g35129 Brassica carinata HOM05D000433 ORTHO05D000443 3.1e-29 132.9 120 59.2
DCAR_003216 Daucus carota HOM05D000433 ORTHO05D000443 3.1e-29 132.9 135 54.8
HanXRQChr17g0562991 Helianthus annuus HOM05D000433 ORTHO05D000443 3.1e-29 132.9 121 59.5
SalBow5G2570 Salvia bowleyana HOM05D000433 ORTHO05D000443 3.1e-29 132.9 120 55.0
Peaxi162Scf00953g00416 Petunia axillaris HOM05D000433 ORTHO05D000443 4.1e-29 132.5 120 56.7
Solyc01g087260.4 Solanum lycopersicum HOM05D000433 ORTHO05D000443 5.3e-29 132.1 121 58.7
Hma1.2p1_0184F.1_g081190 Hydrangea macrophylla HOM05D000433 ORTHO05D000443 9.0e-29 131.3 121 58.7
Sopen01g034310 Solanum pennellii HOM05D000433 ORTHO05D000443 9.0e-29 131.3 121 58.7
arahy.Tifrunner.gnm1.ann1.8D7DUE Arachis hypogaea HOM05D000433 ORTHO05D000443 1.2e-28 131.0 120 57.5
CAN.G41.1 Capsicum annuum HOM05D000433 ORTHO05D000443 1.5e-28 130.6 127 54.3
Sed0008090 Sechium edule HOM05D000433 ORTHO05D000443 1.5e-28 130.6 107 64.5
ATR0605G328 Amborella trichopoda HOM05D000433 ORTHO05D000443 3.4e-28 129.4 120 57.5
Nn2g15315 Nelumbo nucifera HOM05D000433 ORTHO05D000443 7.7e-28 128.3 120 56.7
CANSAT80G0689 Cannabis sativa HOM05D000433 ORTHO05D000443 3.8e-27 125.9 121 58.7
CSS0036960 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D000443 5.0e-27 125.6 75 77.3
HanXRQChr16g0524461 Helianthus annuus HOM05D000433 ORTHO05D000443 8.5e-27 124.8 120 55.0
Cpa.g.sc125.7 Carica papaya HOM05D000433 ORTHO05D000443 1.4e-26 124.0 83 69.9
Ciclev10031014m.g Citrus clementina HOM05D000433 ORTHO05D000443 1.9e-26 123.6 122 56.6
ATR0605G288 Amborella trichopoda HOM05D000433 ORTHO05D000443 2.5e-26 123.2 120 55.0
PGR004G1132 Punica granatum HOM05D000433 ORTHO05D000443 4.2e-26 122.5 119 52.9
HanXRQChr16g0524481 Helianthus annuus HOM05D000433 ORTHO05D000443 7.2e-26 121.7 120 53.3
Carub.0002s1723 Capsella rubella HOM05D000433 ORTHO05D000443 6.1e-25 118.6 124 50.0
CANSAT80G0472 Cannabis sativa HOM05D000433 ORTHO05D000443 2.3e-24 116.7 116 56.9
PGR004G2078 Punica granatum HOM05D000433 ORTHO05D000443 2.3e-24 116.7 120 53.3
CSS0012422 Camellia sinensis var. sinensis HOM05D000433 ORTHO05D000443 1.1e-23 114.4 70 75.7
PGR044G2631 Punica granatum HOM05D000433 ORTHO05D000443 3.7e-22 109.4 121 53.7
PSO782G5515 Papaver somniferum HOM05D000433 ORTHO05D000443 7.7e-20 101.7 110 50.0
Mapoly0003s0307 Marchantia polymorpha HOM05D000433 ORTHO05D000443 1.0e-19 101.3 120 45.0
CAN.G982.33 Capsicum annuum HOM05D000433 ORTHO05D000443 1.3e-19 100.9 76 59.2
CAN.G799.7 Capsicum annuum HOM05D000002 ORTHO05D000001 2.2e-19 100.1 73 61.6
PSO782G2691 Papaver somniferum HOM05D000433 ORTHO05D000443 3.8e-19 99.4 110 48.2
Pp3c21_12920 Physcomitrium patens HOM05D000433 ORTHO05D000443 2.5e-18 96.7 115 44.3
MELO3C032097.2 Cucumis melo HOM05D000433 ORTHO05D000443 7.9e-17 91.7 133 45.9
SMO361G0560 Selaginella moellendorffii HOM05D000433 ORTHO05D000443 7.9e-17 91.7 116 48.3
SMO004G0032 Selaginella moellendorffii HOM05D000433 ORTHO05D000443 2.3e-16 90.1 116 47.4
Pp3c22_6380 Physcomitrium patens HOM05D000433 ORTHO05D000443 8.8e-16 88.2 125 41.6
RcHm_v2.0_Chr1g0316181 Rosa chinensis HOM05D000433 ORTHO05D000443 2.2e-14 83.6 110 50.9
AagrBONN_evm.TU.Sc2ySwM_117.1284 Anthoceros agrestis HOM05D000433 ORTHO05D000443 4.1e-13 79.3 119 37.8
FAN01G0836 Fragaria x ananassa HOM05D000433 ORTHO05D000443 9.1e-13 78.2 51 70.6
Pp3c18_17950 Physcomitrium patens HOM05D000433 ORTHO05D000443 1.1e-10 71.2 140 35.7
Pp3c12_22350 Physcomitrium patens HOM05D000433 ORTHO05D000443 3.2e-10 69.7 78 42.3
QL04p006270 Quercus lobata HOM05D000433 ORTHO05D000443 1.6e-09 67.4 35 88.6
QL04p005882 Quercus lobata HOM05D000433 ORTHO05D000443 2.3e-08 63.5 109 37.6
MBI16_g15338_MAGBIO Magnolia biondii HOM05D000058 ORTHO05D000255 5.2e-08 62.4 33 90.9
CANSAT11G0496 Cannabis sativa HOM05D000433 ORTHO05D000443 5.7e-07 58.9 34 79.4
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 5.7e-07 58.9 40 77.5
CAN.G126.30 Capsicum annuum HOM05D000949 ORTHO05D009565 9.7e-07 58.2 47 55.3
MD02G1309500 Malus domestica HOM05D000433 ORTHO05D000443 2.2e-06 57.0 32 78.1
CAN.G162.15 Capsicum annuum HOM05D003439 ORTHO05D004062 6.3e-06 55.5 34 67.6


User provided reference genes

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