Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 4.0e-104 381.7 234 100.0
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.6e-89 333.2 234 85.9
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-88 330.5 236 80.1
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-88 330.5 236 80.1
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 3.1e-88 328.9 235 80.9
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.1e-88 328.9 235 81.3
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 8.9e-88 327.4 235 79.6
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.5e-87 326.6 234 79.5
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 7.6e-87 324.3 235 79.1
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.7e-86 323.2 234 80.3
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 1.1e-85 320.5 235 80.9
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 1.6e-84 316.6 234 80.3
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 4.6e-84 315.1 251 72.1
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.0e-84 314.7 238 77.3
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 3.0e-83 312.4 246 76.8
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 3.9e-83 312.0 235 80.4
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.1e-82 310.5 235 79.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.1e-82 310.5 240 76.7
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 1.9e-82 309.7 237 79.7
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.5e-82 309.3 236 79.7
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 3.3e-82 308.9 234 74.8
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 3.3e-82 308.9 234 74.8
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 4.3e-82 308.5 236 79.2
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 4.3e-82 308.5 236 80.1
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 4.3e-82 308.5 236 78.0
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 5.6e-82 308.1 234 78.2
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 7.3e-82 307.8 236 80.5
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 7.3e-82 307.8 237 79.7
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 9.6e-82 307.4 234 80.8
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 9.6e-82 307.4 234 76.9
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 9.6e-82 307.4 236 79.7
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.3e-81 307.0 234 73.5
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 1.3e-81 307.0 235 75.3
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 2.1e-81 306.2 234 73.5
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 6.2e-81 304.7 235 76.2
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 8.1e-81 304.3 235 74.9
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 8.1e-81 304.3 234 78.2
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.1e-80 303.9 237 81.4
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.4e-80 303.5 236 79.7
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.8e-80 303.1 235 75.3
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 2.4e-80 302.8 235 76.2
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 2.4e-80 302.8 239 79.5
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.4e-80 302.8 234 71.4
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 3.1e-80 302.4 235 77.9
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 3.1e-80 302.4 235 78.7
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 5.3e-80 301.6 236 74.2
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 6.9e-80 301.2 235 77.9
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 9.0e-80 300.8 234 76.9
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.2e-79 300.4 238 78.2
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.5e-79 300.1 234 71.8
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 1.5e-79 300.1 236 75.8
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 2.0e-79 299.7 236 73.3
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.0e-79 299.7 234 74.8
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.0e-79 299.7 238 77.7
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 2.6e-79 299.3 236 73.3
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.6e-79 299.3 236 77.1
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 2.6e-79 299.3 235 78.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 2.6e-79 299.3 235 77.9
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 3.4e-79 298.9 236 72.5
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.5e-79 298.5 236 78.4
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 5.8e-79 298.1 236 72.9
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 7.6e-79 297.7 237 76.8
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.6e-79 297.7 237 76.8
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 7.6e-79 297.7 237 73.8
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 7.6e-79 297.7 234 76.5
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 9.9e-79 297.4 234 76.1
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 2.9e-78 295.8 236 80.1
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 3.8e-78 295.4 234 74.8
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 4.9e-78 295.0 236 75.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 4.9e-78 295.0 236 74.2
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 6.4e-78 294.7 236 71.6
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 6.4e-78 294.7 234 77.4
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 2.4e-77 292.7 237 72.6
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 3.2e-77 292.4 237 72.6
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 4.2e-77 292.0 236 78.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 4.2e-77 292.0 235 77.0
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 7.1e-77 291.2 235 80.0
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 9.3e-77 290.8 236 71.6
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.2e-76 290.4 237 71.7
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.2e-76 290.4 237 71.7
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.2e-76 290.4 234 73.5
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 2.1e-76 289.7 237 71.7
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 2.1e-76 289.7 238 72.7
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 2.1e-76 289.7 238 72.7
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 2.1e-76 289.7 240 75.0
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.7e-76 289.3 237 72.2
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.5e-76 288.9 237 73.8
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 4.6e-76 288.5 235 79.1
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.6e-76 288.5 235 73.2
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 6.0e-76 288.1 237 72.6
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 6.0e-76 288.1 237 72.6
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 7.9e-76 287.7 237 71.3
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.8e-75 286.6 237 72.2
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.8e-75 286.6 237 72.2
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.8e-75 286.6 237 72.2
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 2.3e-75 286.2 236 70.3
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 3.0e-75 285.8 237 70.9
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 5.1e-75 285.0 235 71.5
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 6.7e-75 284.6 236 68.6
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 6.7e-75 284.6 238 79.4
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.7e-75 284.6 242 77.7
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.1e-74 283.9 248 65.7
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 9.6e-74 280.8 234 67.5
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.6e-73 280.0 235 76.2
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 1.6e-73 280.0 237 75.9
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.6e-73 280.0 230 78.3
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 9.0e-72 274.2 236 73.3
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-71 273.9 234 70.5
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.5e-71 273.5 238 70.6
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 2.0e-71 273.1 236 71.6
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 2.6e-71 272.7 234 73.9
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 5.8e-71 271.6 236 76.3
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 5.8e-71 271.6 236 73.7
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 9.9e-71 270.8 256 61.7
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 1.3e-70 270.4 234 72.2
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 2.2e-70 269.6 237 66.7
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.2e-70 269.6 234 77.8
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 2.9e-70 269.2 289 55.7
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 2.9e-70 269.2 238 72.7
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.9e-70 268.5 237 65.8
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.4e-70 268.1 234 68.8
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 8.4e-70 267.7 239 73.6
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 8.4e-70 267.7 239 73.6
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.1e-69 267.3 221 77.4
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-69 267.3 234 77.8
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-69 266.9 234 77.4
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 9.3e-69 264.2 234 65.4
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.2e-68 263.8 276 65.6
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-68 263.8 234 76.5
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 2.7e-68 262.7 234 76.1
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 2.7e-68 262.7 236 74.6
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 4.6e-68 261.9 234 76.5
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 3.0e-67 259.2 234 67.5
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 2.5e-66 256.1 237 66.7
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.3e-66 255.8 234 74.8
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 5.6e-66 255.0 234 70.9
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 2.7e-60 236.1 238 68.9
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 2.0e-55 219.9 193 72.0
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 7.2e-53 211.5 191 72.3
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 7.9e-52 208.0 242 62.4
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 5.7e-50 201.8 192 71.4
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.3e-49 200.7 236 58.9
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 6.3e-49 198.4 154 77.3
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.1e-48 195.7 257 52.9
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 3.4e-47 192.6 239 57.7
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 1.2e-44 184.1 154 76.0
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 4.6e-44 182.2 118 80.5
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 6.7e-43 178.3 243 52.7
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.1e-42 177.6 118 78.8
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 2.2e-41 173.3 118 78.0
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.5e-39 165.6 118 75.4
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 5.9e-39 165.2 118 75.4
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.7e-38 163.7 160 76.2
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 8.5e-38 161.4 118 73.7
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 9.7e-34 147.9 93 79.6
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 9.7e-34 147.9 119 71.4
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 8.2e-33 144.8 94 77.7
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 1.6e-31 140.6 140 65.7
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 2.0e-31 140.2 69 97.1
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 2.6e-31 139.8 95 73.7
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 1.1e-29 134.4 69 91.3
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 2.6e-26 123.2 184 54.9
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 4.8e-25 119.0 234 41.0
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.8e-24 117.1 187 50.8
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 3.5e-23 112.8 87 65.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 7.7e-23 111.7 95 64.2
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 1.3e-22 110.9 71 77.5
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 2.9e-22 109.8 96 60.4
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 5.0e-22 109.0 67 88.1
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 1.8e-19 100.5 231 33.8
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 3.5e-15 86.3 44 90.9
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 7.7e-15 85.1 56 75.0
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 9.5e-13 78.2 71 56.3
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.2e-10 71.2 83 44.6
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.4e-10 69.7 85 55.3
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.6e-07 60.8 81 50.6


User provided reference genes

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