Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.9e-62 242.3 117 100.0
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 1.3e-34 149.8 125 64.8
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 5.4e-33 144.4 114 68.4
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.2e-32 143.3 124 66.1
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 1.2e-32 143.3 131 64.1
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 2.7e-32 142.1 129 64.3
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 3.5e-32 141.7 124 64.5
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 5.9e-32 141.0 129 62.0
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 7.8e-32 140.6 129 62.0
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 7.8e-32 140.6 129 62.8
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 7.8e-32 140.6 128 62.5
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 7.8e-32 140.6 119 65.5
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.0e-31 140.2 129 62.0
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.0e-31 140.2 129 62.8
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.0e-31 140.2 129 62.8
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 1.0e-31 140.2 131 60.3
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.0e-31 140.2 129 62.0
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 1.0e-31 140.2 129 62.0
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 1.0e-31 140.2 129 62.0
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 1.0e-31 140.2 124 63.7
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.0e-31 140.2 131 61.8
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.0e-31 140.2 129 62.0
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.3e-31 139.8 129 61.2
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.3e-31 139.8 129 62.0
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 1.3e-31 139.8 129 61.2
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 1.3e-31 139.8 131 61.1
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.7e-31 139.4 129 62.0
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 1.7e-31 139.4 129 62.8
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.7e-31 139.4 129 62.8
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 1.7e-31 139.4 128 61.7
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 1.7e-31 139.4 129 62.0
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 2.3e-31 139.0 129 61.2
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 61.2
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 61.2
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 62.0
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 61.2
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 61.2
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 61.2
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 62.0
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 2.9e-31 138.7 129 61.2
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 3.8e-31 138.3 125 61.6
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 3.8e-31 138.3 129 62.0
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 5.0e-31 137.9 131 60.3
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 5.0e-31 137.9 129 61.2
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 5.0e-31 137.9 129 61.2
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 5.0e-31 137.9 129 61.2
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 6.6e-31 137.5 131 59.5
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 6.6e-31 137.5 129 61.2
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 6.6e-31 137.5 129 61.2
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 6.6e-31 137.5 129 61.2
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 6.6e-31 137.5 129 60.5
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 6.6e-31 137.5 129 61.2
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 59.7
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 61.2
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 8.6e-31 137.1 127 62.2
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 8.6e-31 137.1 129 60.5
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.1e-30 136.7 129 59.7
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 1.1e-30 136.7 129 59.7
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.1e-30 136.7 128 60.2
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 1.1e-30 136.7 129 59.7
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.1e-30 136.7 129 59.7
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.1e-30 136.7 129 59.7
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 1.1e-30 136.7 129 59.7
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.1e-30 136.7 131 59.5
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 1.1e-30 136.7 129 60.5
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 1.5e-30 136.3 129 58.9
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 1.5e-30 136.3 131 59.5
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.5e-30 136.3 129 59.7
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.9e-30 136.0 129 59.7
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 1.9e-30 136.0 129 60.5
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 1.9e-30 136.0 129 58.9
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 2.5e-30 135.6 129 58.9
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 2.5e-30 135.6 129 60.5
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 2.5e-30 135.6 129 60.5
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 2.5e-30 135.6 129 58.9
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.5e-30 135.6 129 59.7
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.5e-30 135.6 129 60.5
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.5e-30 135.6 129 58.9
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 2.5e-30 135.6 131 58.8
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 2.5e-30 135.6 131 58.8
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 3.3e-30 135.2 131 58.8
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 3.3e-30 135.2 129 59.7
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 3.3e-30 135.2 129 59.7
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.3e-30 135.2 129 59.7
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 3.3e-30 135.2 129 59.7
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 3.3e-30 135.2 129 59.7
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 3.3e-30 135.2 129 59.7
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 3.3e-30 135.2 129 61.2
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 4.3e-30 134.8 127 59.8
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 4.3e-30 134.8 127 59.8
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 4.3e-30 134.8 127 59.8
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 4.3e-30 134.8 129 58.9
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 4.3e-30 134.8 129 58.9
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 4.3e-30 134.8 129 60.5
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 4.3e-30 134.8 129 60.5
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 5.6e-30 134.4 129 60.5
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 7.3e-30 134.0 131 59.5
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 7.3e-30 134.0 122 61.5
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 7.3e-30 134.0 129 58.9
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 9.5e-30 133.7 129 57.4
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 1.6e-29 132.9 142 54.9
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 2.1e-29 132.5 131 57.3
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 2.1e-29 132.5 124 60.5
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 2.1e-29 132.5 124 60.5
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 2.8e-29 132.1 129 58.9
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.8e-29 132.1 129 57.4
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 2.8e-29 132.1 129 58.9
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 2.8e-29 132.1 146 53.4
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.6e-29 131.7 129 58.1
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.6e-29 131.7 129 58.1
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 3.6e-29 131.7 125 59.2
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 6.1e-29 131.0 129 58.1
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 6.1e-29 131.0 136 55.9
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 1.4e-28 129.8 125 59.2
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.4e-28 129.8 125 59.2
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 1.4e-28 129.8 125 59.2
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 1.8e-28 129.4 125 58.4
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.8e-28 129.4 129 58.1
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 2.3e-28 129.0 129 56.6
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 2.3e-28 129.0 129 58.1
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 5.2e-28 127.9 125 59.2
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 6.8e-28 127.5 125 59.2
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 6.8e-28 127.5 154 52.6
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 6.8e-28 127.5 154 52.6
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 8.9e-28 127.1 129 57.4
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 5.8e-27 124.4 125 57.6
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.3e-26 123.2 116 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 3.5e-24 115.2 129 52.7
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-23 113.2 130 50.8
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 6.6e-23 110.9 127 55.9
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 3.3e-22 108.6 125 51.2
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 7.3e-22 107.5 122 54.1
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 7.3e-22 107.5 122 54.1
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 9.5e-22 107.1 71 76.1
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.1e-20 102.1 95 58.9
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 5.8e-19 97.8 131 46.6
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 7.5e-19 97.4 96 55.2
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 2.2e-18 95.9 142 43.0
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 6.4e-18 94.4 96 55.2
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.3e-15 86.7 114 49.1
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 5.1e-15 84.7 116 47.4
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 1.6e-13 79.7 117 45.3
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 1.5e-11 73.2 115 45.2
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 9.2e-09 63.9 61 55.7
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 9.2e-09 63.9 61 55.7
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 1.2e-08 63.5 121 34.7
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 7.8e-08 60.8 51 64.7
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 3.9e-07 58.5 46 67.4
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 1.9e-06 56.2 110 38.2


User provided reference genes

Program Settings