Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 2.1e-163 580.1 299 100.0
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.8e-61 241.5 304 53.3
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 5.4e-58 229.9 322 48.1
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 6.0e-57 226.5 269 51.3
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 5.1e-56 223.4 332 45.5
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 5.1e-56 223.4 344 45.9
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 4.3e-55 220.3 315 47.9
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 2.8e-54 217.6 328 45.7
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.4e-53 215.3 257 51.8
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 5.2e-53 213.4 304 48.0
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 6.9e-53 213.0 328 44.5
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 2.0e-52 211.5 267 50.9
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 7.6e-52 209.5 337 46.3
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 7.6e-52 209.5 348 45.1
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 7.6e-52 209.5 271 50.2
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 1.7e-51 208.4 250 51.6
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 3.8e-51 207.2 344 45.3
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 3.8e-51 207.2 349 45.0
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 6.4e-51 206.5 302 46.0
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 3.2e-50 204.1 310 46.5
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.1e-50 203.0 309 44.0
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 7.1e-50 203.0 252 54.8
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 9.3e-50 202.6 251 50.2
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.2e-49 202.2 247 53.4
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.6e-49 201.8 287 47.4
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.6e-49 201.8 332 42.8
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.6e-49 201.8 247 53.4
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 2.1e-49 201.4 330 46.1
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 2.1e-49 201.4 240 56.2
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.1e-49 201.4 248 48.8
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 6.0e-49 199.9 310 46.1
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.0e-48 199.1 235 48.9
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 1.0e-48 199.1 263 48.7
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 1.0e-48 199.1 309 45.3
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.0e-48 199.1 315 43.2
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.7e-48 198.4 304 45.1
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 2.3e-48 198.0 315 44.4
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 2.3e-48 198.0 308 45.8
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 3.0e-48 197.6 317 47.0
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 3.0e-48 197.6 317 47.0
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 3.0e-48 197.6 263 48.3
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 3.0e-48 197.6 228 50.9
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 3.9e-48 197.2 313 44.1
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 5.1e-48 196.8 163 66.3
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 5.1e-48 196.8 163 66.3
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 6.6e-48 196.4 236 50.8
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 8.7e-48 196.1 171 63.2
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 8.7e-48 196.1 171 63.2
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 8.7e-48 196.1 352 40.9
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 1.9e-47 194.9 335 43.9
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.9e-47 194.9 319 42.9
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.5e-47 194.5 229 53.3
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 2.5e-47 194.5 330 44.8
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 2.5e-47 194.5 315 43.8
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 2.5e-47 194.5 239 50.6
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 3.3e-47 194.1 229 52.8
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 3.3e-47 194.1 164 63.4
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 3.3e-47 194.1 249 52.2
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 7.3e-47 193.0 241 50.2
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 7.3e-47 193.0 241 50.2
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 7.3e-47 193.0 241 50.2
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 7.3e-47 193.0 337 42.4
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 7.3e-47 193.0 331 43.5
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 1.6e-46 191.8 234 54.3
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 2.8e-46 191.0 308 42.9
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 2.8e-46 191.0 248 50.0
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 4.8e-46 190.3 241 51.0
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 4.8e-46 190.3 241 51.0
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 8.1e-46 189.5 170 61.2
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 8.1e-46 189.5 165 63.0
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.1e-45 189.1 241 49.8
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 1.1e-45 189.1 252 51.2
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 1.8e-45 188.3 255 49.8
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.8e-45 188.3 284 43.7
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.8e-45 188.3 228 52.6
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 1.8e-45 188.3 170 60.6
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 1.8e-45 188.3 177 60.5
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 2.4e-45 188.0 322 41.0
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 4.0e-45 187.2 226 51.8
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 6.9e-45 186.4 175 59.4
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.5e-44 185.3 171 58.5
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 2.0e-44 184.9 164 60.4
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 2.6e-44 184.5 246 48.4
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 5.8e-44 183.3 248 48.4
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 9.9e-44 182.6 191 57.6
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 9.9e-44 182.6 270 46.7
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 2.2e-43 181.4 225 52.9
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 2.9e-43 181.0 249 49.8
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 3.8e-43 180.6 233 49.8
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 3.8e-43 180.6 252 48.0
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 8.4e-43 179.5 232 49.1
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 3.2e-42 177.6 244 48.0
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 3.2e-42 177.6 165 58.8
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 7.1e-42 176.4 232 50.4
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 3.0e-40 171.0 321 40.8
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 3.0e-40 171.0 239 45.2
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 2.0e-36 158.3 237 47.3
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.3e-35 155.6 218 46.3
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.7e-35 155.2 249 44.2
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.2e-33 149.1 239 41.8
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 2.7e-33 147.9 310 38.7
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 3.9e-32 144.1 288 40.3
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 3.9e-32 144.1 328 37.8
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.5e-31 142.1 237 44.7
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 3.7e-30 137.5 179 49.2
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 6.9e-29 133.3 193 48.2
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.3e-16 92.4 50 90.0
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.5e-15 89.0 52 84.6
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.5e-15 89.0 52 84.6
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.5e-15 88.2 49 83.7
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 9.7e-15 86.3 133 42.1
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.6e-14 85.5 51 80.4
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.1e-13 82.8 60 73.3
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 1.4e-10 72.4 208 30.3
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 1.9e-10 72.0 49 69.4
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 1.2e-09 69.3 121 36.4
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 3.6e-09 67.8 163 34.4
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 3.0e-08 64.7 47 61.7
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 8.8e-08 63.2 47 59.6
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 2.6e-07 61.6 37 81.1
Lsat_1_v5_gn_5_98381 Lactuca sativa HOM05D000001 ORTHO05D000003 2.6e-07 61.6 138 31.2
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 4.4e-07 60.8 47 55.3
Peaxi162Scf00398g00211 Petunia axillaris HOM05D007456 ORTHO05D009411 1.7e-06 58.9 122 30.3
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 2.8e-06 58.2 47 57.4
Gohir.A05G338400 Gossypium hirsutum HOM05D007456 ORTHO05D009411 2.8e-06 58.2 130 29.2
Gorai.012G086600 Gossypium raimondii HOM05D007456 ORTHO05D009411 2.8e-06 58.2 130 29.2
PGSC0003DMG400023682 Solanum tuberosum HOM05D007456 ORTHO05D009411 2.8e-06 58.2 122 30.3
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 2.8e-06 58.2 131 29.0
Sopen10g030890 Solanum pennellii HOM05D007456 ORTHO05D009411 3.7e-06 57.8 122 30.3
MSTRG.26940 Avicennia marina HOM05D007456 ORTHO05D009411 4.8e-06 57.4 127 32.3
Actinidia23531 Actinidia chinensis HOM05D000424 ORTHO05D038032 6.3e-06 57.0 118 27.1
Gohir.D04G076800 Gossypium hirsutum HOM05D007456 ORTHO05D009411 6.3e-06 57.0 130 28.5
MBI07_g08925_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 8.2e-06 56.6 104 36.5
Hund05688 Selenicereus undatus HOM05D001270 ORTHO05D001099 8.2e-06 56.6 121 30.6


User provided reference genes

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