Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g20556_MAGBIO Magnolia biondii HOM05D002344 ORTHO05D019454 1.6e-32 142.1 70 100.0
MBI18_g01971_MAGBIO Magnolia biondii HOM05D002344 ORTHO05D019454 3.1e-20 101.3 48 100.0
MBI09_g15772_MAGBIO Magnolia biondii HOM05D002344 ORTHO05D019454 2.0e-19 98.6 48 97.9
MBI14_g03618_MAGBIO Magnolia biondii HOM05D002344 ORTHO05D019454 1.4e-15 85.9 41 97.6
MBI17_g12238_MAGBIO Magnolia biondii HOM05D002344 ORTHO05D019454 5.7e-14 80.5 41 92.7
Potri.005G242100 Populus trichocarpa HOM05D002344 ORTHO05D002954 5.5e-09 63.9 45 68.9
Actinidia17000 Actinidia chinensis HOM05D002344 ORTHO05D002954 1.2e-08 62.8 44 65.9
MD02G1126400 Malus domestica HOM05D002344 ORTHO05D002954 1.2e-08 62.8 45 66.7
Nn5g30778 Nelumbo nucifera HOM05D002344 ORTHO05D002954 2.1e-08 62.0 32 87.5
Nn6g31995 Nelumbo nucifera HOM05D002344 ORTHO05D002954 2.1e-08 62.0 32 87.5
TAR381G1329 Trochodendron aralioides HOM05D002344 ORTHO05D002954 2.1e-08 62.0 32 87.5
FvH4_1g11410 Fragaria vesca HOM05D002344 ORTHO05D002954 2.7e-08 61.6 44 63.6
FAN19G2887 Fragaria x ananassa HOM05D002344 ORTHO05D002954 2.7e-08 61.6 44 63.6
FAN23G0707 Fragaria x ananassa HOM05D002344 ORTHO05D002954 2.7e-08 61.6 44 63.6
Sabra05G0187400 Salix brachista HOM05D002344 ORTHO05D002954 2.7e-08 61.6 45 66.7
ATR0716G055 Amborella trichopoda HOM05D002344 ORTHO05D002954 3.6e-08 61.2 32 87.5
MD15G1242400 Malus domestica HOM05D002344 ORTHO05D002954 3.6e-08 61.2 45 64.4
HanXRQChr11g0322091 Helianthus annuus HOM05D002344 ORTHO05D002954 4.7e-08 60.8 32 81.2
PSO541G0184 Papaver somniferum HOM05D002344 ORTHO05D002954 4.7e-08 60.8 32 84.4
PSO675G7018 Papaver somniferum HOM05D002344 ORTHO05D002954 4.7e-08 60.8 32 84.4
Prupe.7G171800 Prunus persica HOM05D002344 ORTHO05D002954 4.7e-08 60.8 45 64.4
Rhsim10G0209100 Rhododendron simsii HOM05D002344 ORTHO05D002954 4.7e-08 60.8 32 84.4
Solyc02g083560.3 Solanum lycopersicum HOM05D002344 ORTHO05D002954 4.7e-08 60.8 45 62.2
Sopen02g028340 Solanum pennellii HOM05D002344 ORTHO05D002954 4.7e-08 60.8 45 62.2
PGSC0003DMG400003648 Solanum tuberosum HOM05D002344 ORTHO05D002954 4.7e-08 60.8 45 62.2
TAR625G0873 Trochodendron aralioides HOM05D002344 ORTHO05D002954 4.7e-08 60.8 32 84.4
vmacro22195 Vaccinium macrocarpon HOM05D002344 ORTHO05D002954 4.7e-08 60.8 32 84.4
Actinidia03179 Actinidia chinensis HOM05D002344 ORTHO05D019454 6.1e-08 60.5 31 83.9
CANSAT25G1690 Cannabis sativa HOM05D002344 ORTHO05D002954 6.1e-08 60.5 32 75.0
CAN.G1274.34 Capsicum annuum HOM05D002344 ORTHO05D002954 6.1e-08 60.5 45 60.0
Ciclev10024925m.g Citrus clementina HOM05D002344 ORTHO05D002954 6.1e-08 60.5 32 81.2
Duzib147G1566 Durio zibethinus HOM05D002344 ORTHO05D002954 6.1e-08 60.5 32 81.2
PGR119G0571 Punica granatum HOM05D002344 ORTHO05D002954 6.1e-08 60.5 32 81.2
vmacro23196 Vaccinium macrocarpon HOM05D002344 ORTHO05D002954 6.1e-08 60.5 31 87.1
Dinv33654 Davidia involucrata HOM05D002344 ORTHO05D002954 8.0e-08 60.1 32 84.4
FAN28G0319 Fragaria x ananassa HOM05D002344 ORTHO05D002954 8.0e-08 60.1 44 61.4
Gohir.A11G042600 Gossypium hirsutum HOM05D002344 ORTHO05D002954 8.0e-08 60.1 32 81.2
Gohir.D11G046100 Gossypium hirsutum HOM05D002344 ORTHO05D002954 8.0e-08 60.1 32 81.2
Gorai.007G049400 Gossypium raimondii HOM05D002344 ORTHO05D002954 8.0e-08 60.1 32 81.2
Atru.chr3.862 Acer truncatum HOM05D002344 ORTHO05D002954 1.0e-07 59.7 32 75.0
CSS0032290 Camellia sinensis var. sinensis HOM05D002344 ORTHO05D002954 1.0e-07 59.7 32 78.1
CSS0042556 Camellia sinensis var. sinensis HOM05D002344 ORTHO05D002954 1.0e-07 59.7 32 81.2
Ciclev10000335m.g Citrus clementina HOM05D002344 ORTHO05D002954 1.0e-07 59.7 32 78.1
Cc07_g11090 Coffea canephora HOM05D002344 ORTHO05D002954 1.0e-07 59.7 32 81.2
Dinv31869 Davidia involucrata HOM05D002344 ORTHO05D002954 1.0e-07 59.7 44 63.6
TWI56G0516 Tripterygium wilfordii HOM05D002344 ORTHO05D002954 1.0e-07 59.7 32 78.1
Cc10_g01430 Coffea canephora HOM05D002344 ORTHO05D002954 1.4e-07 59.3 32 78.1
COL.COLO4_22465 Corchorus olitorius HOM05D002344 ORTHO05D002954 1.4e-07 59.3 32 78.1
Dinv40119 Davidia involucrata HOM05D002344 ORTHO05D002954 1.8e-07 58.9 32 81.2
VMungo1215G0913 Vigna mungo HOM05D002344 ORTHO05D002954 1.8e-07 58.9 34 79.4
CsaV3_3G045990 Cucumis sativus L. HOM05D002344 ORTHO05D002954 2.3e-07 58.5 32 81.2
FAN26G1734 Fragaria x ananassa HOM05D002344 ORTHO05D002954 2.3e-07 58.5 44 61.4
Os03g0801600 Oryza sativa ssp. japonica HOM05D002344 ORTHO05D002954 2.3e-07 58.5 32 78.1
QL06p051112 Quercus lobata HOM05D002344 ORTHO05D002954 2.3e-07 58.5 32 75.0
Phvul.002G106500 Phaseolus vulgaris HOM05D002344 ORTHO05D002954 3.0e-07 58.2 32 81.2
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 3.0e-07 58.2 45 60.0
VMungo0647G0608 Vigna mungo HOM05D002344 ORTHO05D002954 3.0e-07 58.2 44 63.6
Aqoxy6G02171 Aquilegia oxysepala HOM05D002344 ORTHO05D002954 4.0e-07 57.8 32 81.2
EL10Ac1g02159 Beta vulgaris HOM05D002344 ORTHO05D002954 4.0e-07 57.8 32 78.1
Manes.18G011700 Manihot esculenta HOM05D002344 ORTHO05D002954 4.0e-07 57.8 32 75.0
Nitab4.5_0000192g0160 Nicotiana tabacum HOM05D002344 ORTHO05D002954 4.0e-07 57.8 32 78.1
Peaxi162Scf00064g00736 Petunia axillaris HOM05D002344 ORTHO05D002954 4.0e-07 57.8 32 78.1
Rhsim06G0018700 Rhododendron simsii HOM05D002344 ORTHO05D002954 4.0e-07 57.8 32 78.1
THA.LOC104813783 Tarenaya hassleriana HOM05D002344 ORTHO05D002954 4.0e-07 57.8 32 75.0
Atru.chr13.255 Acer truncatum HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 71.9
Actinidia17419 Actinidia chinensis HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 78.1
Actinidia22952 Actinidia chinensis HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 78.1
Ca_13422_v3 Cicer arietinum L. HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 78.1
Ca_13438_v3 Cicer arietinum L. HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 78.1
Thhalv10018141m.g Eutrema salsugineum HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 75.0
FAN15G1281 Fragaria x ananassa HOM05D002344 ORTHO05D002954 5.2e-07 57.4 30 80.0
FAN27G1074 Fragaria x ananassa HOM05D002344 ORTHO05D002954 5.2e-07 57.4 30 80.0
HanXRQChr15g0483861 Helianthus annuus HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 71.9
Manes.02G107500 Manihot esculenta HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 75.0
Medtr1g025610 Medicago truncatula HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 81.2
Prupe.1G362700 Prunus persica HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 75.0
RcHm_v2.0_Chr6g0303301 Rosa chinensis HOM05D002344 ORTHO05D002954 5.2e-07 57.4 30 80.0
Solyc03g033400.4 Solanum lycopersicum HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 75.0
Sopen03g006170 Solanum pennellii HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 75.0
PGSC0003DMG400022528 Solanum tuberosum HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 75.0
Thecc.01G014300 Theobroma cacao HOM05D002344 ORTHO05D002954 5.2e-07 57.4 32 78.1
vmacro07571 Vaccinium macrocarpon HOM05D002344 ORTHO05D002954 5.2e-07 57.4 31 80.6
AL2G35860 Arabidopsis lyrata HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 71.9
AT1G75850 Arabidopsis thaliana HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 71.9
CSS0017701 Camellia sinensis var. sinensis HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 78.1
CSS0029031 Camellia sinensis var. sinensis HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 78.1
CARHR069400 Cardamine hirsuta HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 71.9
CiPaw.07G061300 Carya illinoinensis HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 78.1
Lj4A21G61 Lonicera japonica HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 78.1
Nitab4.5_0001944g0040 Nicotiana tabacum HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 75.0
Phvul.001G006000 Phaseolus vulgaris HOM05D002344 ORTHO05D002954 6.7e-07 57.0 44 61.4
Psat6g003320 Pisum sativum HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 75.0
Sabra05G0090700 Salix brachista HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 71.9
HPP92_015864 Vanilla planifolia HOM05D002344 ORTHO05D002954 6.7e-07 57.0 32 81.2
CAN.G1925.1 Capsicum annuum HOM05D002344 ORTHO05D002954 8.8e-07 56.6 32 78.1
CDE05G3567 Ceratophyllum demersum HOM05D002344 ORTHO05D002954 8.8e-07 56.6 32 78.1
ClCG05G015560 Citrullus lanatus HOM05D002344 ORTHO05D002954 8.8e-07 56.6 32 78.1
MELO3C003740.2 Cucumis melo HOM05D002344 ORTHO05D002954 8.8e-07 56.6 32 78.1
ECA232G1756 Erigeron canadensis HOM05D002344 ORTHO05D002954 8.8e-07 56.6 32 75.0
MD15G1010200 Malus domestica HOM05D002344 ORTHO05D002954 8.8e-07 56.6 32 75.0
Glyma.01G164100 Glycine max HOM05D002344 ORTHO05D002954 1.2e-06 56.2 32 78.1
Glyma.17G259200 Glycine max HOM05D002344 ORTHO05D002954 1.2e-06 56.2 32 75.0
Lj5g0023508 Lotus japonicus HOM05D002344 ORTHO05D002954 1.2e-06 56.2 32 75.0
SHI08540 Sapria himalayana HOM05D002344 ORTHO05D002954 1.2e-06 56.2 32 68.8
Hund05173 Selenicereus undatus HOM05D002344 ORTHO05D002954 1.2e-06 56.2 32 75.0
Sc02g0008620 Simmondsia chinensis HOM05D002344 ORTHO05D002954 1.2e-06 56.2 32 71.9
PGSC0003DMG400029334 Solanum tuberosum HOM05D002344 ORTHO05D002954 1.2e-06 56.2 32 78.1
FvH4_2g38180 Fragaria vesca HOM05D002344 ORTHO05D002954 1.5e-06 55.8 30 76.7
Glyma.11G079200 Glycine max HOM05D002344 ORTHO05D002954 1.5e-06 55.8 32 78.1
Lalb_Chr05g0212241 Lupinus albus HOM05D002344 ORTHO05D002954 1.5e-06 55.8 32 78.1
QL02p012192 Quercus lobata HOM05D002344 ORTHO05D002954 1.5e-06 55.8 32 75.0
Solyc12g089340.2 Solanum lycopersicum HOM05D002344 ORTHO05D002954 1.5e-06 55.8 32 78.1
Sopen12g031200 Solanum pennellii HOM05D002344 ORTHO05D002954 1.5e-06 55.8 32 78.1
Aa31LG4G6050 Aethionema arabicum HOM05D002344 ORTHO05D002954 2.0e-06 55.5 32 68.8
Lsat_1_v5_gn_0_1260 Lactuca sativa HOM05D002344 ORTHO05D002954 2.0e-06 55.5 32 71.9
Lsat_1_v5_gn_3_72040 Lactuca sativa HOM05D002344 ORTHO05D002954 2.0e-06 55.5 32 68.8
SalBow7G3851 Salvia bowleyana HOM05D002344 ORTHO05D002954 2.0e-06 55.5 32 71.9
Zm00001eb061190 Zea mays HOM05D002344 ORTHO05D002954 2.0e-06 55.5 32 75.0
Aa31LG4G19310 Aethionema arabicum HOM05D002344 ORTHO05D002954 2.6e-06 55.1 43 62.8
arahy.Tifrunner.gnm1.ann1.1NY0MW Arachis hypogaea HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 71.9
arahy.Tifrunner.gnm1.ann1.386S4Z Arachis hypogaea HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 71.9
Cpa.g.sc6.289 Carica papaya HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 71.9
FAN20G2109 Fragaria x ananassa HOM05D002344 ORTHO05D002954 2.6e-06 55.1 30 76.7
Glyma.14G220300 Glycine max HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 75.0
Peaxi162Scf00635g00716 Petunia axillaris HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 71.9
Psat2g153040 Pisum sativum HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 78.1
Potri.002G019400 Populus trichocarpa HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 75.0
TPR.G26384 Trifolium pratense HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 75.0
GSVIVG01009948001 Vitis vinifera HOM05D002344 ORTHO05D002954 2.6e-06 55.1 32 75.0
AL5G31730 Arabidopsis lyrata HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 75.0
Carub.0005s1768 Capsella rubella HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 75.0
CARHR160890 Cardamine hirsuta HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 75.0
Manes.01G148800 Manihot esculenta HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 71.9
Medtr5g022610 Medicago truncatula HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 78.1
Nitab4.5_0007831g0020 Nicotiana tabacum HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 75.0
Potri.005G110600 Populus trichocarpa HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 68.8
Thecc.08G047700 Theobroma cacao HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 71.9
TPR.G10523 Trifolium pratense HOM05D002344 ORTHO05D002954 3.3e-06 54.7 32 78.1
RcHm_v2.0_Chr2g0098981 Rosa chinensis HOM05D002344 ORTHO05D002954 4.4e-06 54.3 32 71.9
Zm00001eb212740 Zea mays HOM05D002344 ORTHO05D002954 4.4e-06 54.3 32 71.9
BcaC08g47078 Brassica carinata HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
BcaC08g47319 Brassica carinata HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
A07p41420 Brassica napus HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
C02p33600 Brassica napus HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
C06p49820 Brassica napus HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
BolC2t09345H Brassica oleracea HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
BolC6t40020H Brassica oleracea HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
BraA07t31675Z Brassica rapa HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
Eucgr.H00957 Eucalyptus grandis HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
Sp5g30990 Schrenkiella parvula HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 68.8
GSVIVG01018728001 Vitis vinifera HOM05D002344 ORTHO05D002954 5.7e-06 53.9 32 65.6
AT3G51310 Arabidopsis thaliana HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 71.9
arahy.Tifrunner.gnm1.ann1.2DB4EL Arachis hypogaea HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 75.0
arahy.Tifrunner.gnm1.ann1.FBLS0X Arachis hypogaea HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 75.0
CAN.G354.47 Capsicum annuum HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 71.9
COL.COLO4_26119 Corchorus olitorius HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 68.8
Duzib116G0321 Durio zibethinus HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 68.8
Lalb_Chr09g0321591 Lupinus albus HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 75.0
Sed0010944 Sechium edule HOM05D002344 ORTHO05D002954 7.5e-06 53.5 32 75.0
Eucgr.I02329 Eucalyptus grandis HOM05D002344 ORTHO05D002954 9.7e-06 53.1 32 68.8
Lj4A222T55 Lonicera japonica HOM05D002344 ORTHO05D002954 9.7e-06 53.1 32 71.9
Nitab4.5_0001685g0070 Nicotiana tabacum HOM05D002344 ORTHO05D002954 9.7e-06 53.1 32 71.9
Nitab4.5_0001892g0120 Nicotiana tabacum HOM05D002344 ORTHO05D002954 9.7e-06 53.1 45 53.3


User provided reference genes

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