Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.1e-139 500.0 260 100.0
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.5e-112 409.8 262 82.1
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 4.6e-109 398.3 262 79.4
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 3.0e-108 395.6 262 78.6
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 3.1e-105 385.6 256 78.5
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 1.2e-104 383.6 262 77.1
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 3.8e-103 378.6 261 76.6
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.1e-102 377.1 261 75.9
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.4e-102 376.7 262 72.9
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 5.4e-102 374.8 262 75.6
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 7.1e-102 374.4 263 74.5
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 7.1e-102 374.4 262 72.5
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 2.7e-101 372.5 263 75.7
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 1.3e-100 370.2 261 74.7
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.7e-100 369.8 263 75.7
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.7e-100 369.8 266 75.2
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 5.1e-100 368.2 262 74.4
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 8.7e-100 367.5 260 75.4
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 2.5e-99 365.9 262 74.8
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 5.6e-99 364.8 264 74.2
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 7.3e-99 364.4 256 75.0
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.3e-98 363.6 261 72.8
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 1.6e-98 363.2 251 75.3
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.8e-98 362.5 261 72.8
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 2.8e-98 362.5 264 73.5
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 3.6e-98 362.1 263 74.9
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 4.8e-98 361.7 261 72.8
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 4.8e-98 361.7 264 73.5
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 4.8e-98 361.7 261 74.7
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.4e-97 360.1 259 72.6
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.4e-97 359.4 260 72.3
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 2.4e-97 359.4 256 74.6
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 3.1e-97 359.0 260 73.5
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.1e-97 359.0 259 74.1
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 5.3e-97 358.2 254 75.2
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 6.9e-97 357.8 259 73.0
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 6.9e-97 357.8 261 72.0
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 9.0e-97 357.5 256 75.0
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 9.0e-97 357.5 259 73.7
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 9.0e-97 357.5 259 73.7
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.2e-96 357.1 256 74.6
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 3.4e-96 355.5 260 72.3
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 5.8e-96 354.8 263 73.4
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 5.8e-96 354.8 258 71.7
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 5.8e-96 354.8 256 74.2
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 5.8e-96 354.8 261 70.9
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 7.6e-96 354.4 256 74.2
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 7.6e-96 354.4 263 72.6
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.3e-95 353.6 259 71.4
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.7e-95 353.2 262 71.0
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 1.7e-95 353.2 264 73.9
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 2.2e-95 352.8 261 70.5
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.9e-95 352.4 261 73.2
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.9e-94 349.7 260 70.4
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 2.4e-94 349.4 280 68.2
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 2.4e-94 349.4 281 68.0
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.2e-94 349.0 260 71.9
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.2e-93 347.1 263 70.0
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 2.7e-93 345.9 251 74.5
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 2.7e-93 345.9 260 70.8
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.0e-92 344.0 259 69.1
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.8e-92 343.2 260 71.5
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 3.0e-92 342.4 213 80.8
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 8.7e-92 340.9 260 70.0
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 2.5e-91 339.3 259 71.0
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 5.6e-91 338.2 259 68.3
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 9.6e-91 337.4 260 69.6
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.3e-90 337.0 207 81.6
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 6.2e-90 334.7 260 69.2
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 1.8e-89 333.2 264 67.8
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 2.4e-89 332.8 265 69.4
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 5.3e-89 331.6 329 57.8
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 5.3e-89 331.6 321 60.1
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 3.4e-88 328.9 262 68.7
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 9.9e-88 327.4 263 68.8
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 2.2e-87 326.2 280 63.9
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 4.9e-87 325.1 284 62.7
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 2.4e-86 322.8 253 68.4
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 7.1e-86 321.2 264 67.0
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 9.3e-86 320.9 264 68.9
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.2e-85 320.5 209 77.5
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 2.7e-85 319.3 259 66.4
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 3.5e-85 318.9 304 58.9
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 7.9e-85 317.8 263 66.9
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 3.0e-84 315.8 260 65.8
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 3.9e-84 315.5 254 68.5
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 3.9e-84 315.5 234 69.7
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.5e-83 313.5 241 71.0
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 5.6e-83 311.6 253 67.2
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 5.6e-83 311.6 253 67.2
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 7.4e-83 311.2 272 66.5
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-82 310.5 253 67.2
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 8.2e-82 307.8 249 67.1
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.0e-80 303.1 243 67.9
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 4.5e-80 302.0 261 64.8
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.0e-79 300.8 262 66.8
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.2e-79 299.7 268 61.6
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 3.8e-79 298.9 259 65.6
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.1e-78 297.4 185 81.1
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 3.2e-78 295.8 265 65.3
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.0e-76 290.8 330 53.3
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.3e-76 290.4 262 64.1
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 6.7e-76 288.1 251 63.7
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.5e-72 276.9 212 70.3
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 5.9e-72 275.0 259 58.3
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 5.9e-72 275.0 293 54.9
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 7.6e-72 274.6 193 70.5
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 1.0e-71 274.2 165 83.6
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 9.3e-70 267.7 209 71.3
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.1e-69 266.5 226 61.9
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 6.1e-69 265.0 269 60.6
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.3e-68 263.8 207 69.6
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 8.7e-68 261.2 260 58.5
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 1.5e-67 260.4 236 64.0
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 8.2e-66 254.6 286 53.1
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 1.1e-65 254.2 215 65.1
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 3.4e-64 249.2 154 83.8
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 2.5e-62 243.0 161 76.4
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 5.1e-60 235.3 315 47.3
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.4e-59 232.3 257 53.3
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 2.1e-53 213.4 189 61.9
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.6e-48 197.2 129 79.1
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 1.6e-45 187.2 164 61.6
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 7.5e-35 151.8 126 63.5
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 3.1e-25 119.8 104 61.5
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 2.9e-23 113.2 190 37.9
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 6.1e-21 105.5 208 33.7
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 5.0e-15 85.9 194 35.1
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 5.0e-15 85.9 83 56.6
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 4.4e-11 72.8 50 70.0
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 7.5e-11 72.0 52 73.1
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 3.5e-08 63.2 181 34.3
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.0e-07 61.6 46 71.7
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 3.3e-06 56.6 71 52.1


User provided reference genes

Program Settings