Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 2.9e-90 335.1 160 100.0
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 7.3e-49 197.6 171 62.6
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.6e-48 196.4 171 62.0
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.4e-39 166.0 157 59.2
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.4e-39 166.0 157 59.2
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 1.2e-38 163.7 141 62.4
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 2.6e-38 162.5 141 61.7
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 2.6e-38 162.5 141 61.7
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 2.9e-37 159.1 141 60.3
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.7e-34 149.8 135 59.3
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.7e-34 149.8 135 59.3
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.7e-34 149.8 135 59.3
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.7e-34 149.8 135 59.3
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.7e-34 149.8 135 59.3
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.7e-34 149.8 135 59.3
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 5.1e-34 148.3 156 54.5
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.5e-33 146.7 136 58.8
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 7.3e-33 144.4 139 56.8
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 1.1e-31 140.6 111 65.8
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 9.9e-30 134.0 128 57.0
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 2.9e-29 132.5 128 56.2
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 6.4e-29 131.3 128 57.0
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 2.4e-28 129.4 128 55.5
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 2.4e-28 129.4 128 55.5
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 2.4e-28 129.4 125 56.8
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 2.4e-28 129.4 125 56.8
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 3.2e-28 129.0 126 55.6
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 4.2e-28 128.6 125 56.0
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 5.4e-28 128.3 125 56.0
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 5.4e-28 128.3 125 56.0
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 5.4e-28 128.3 125 56.0
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 9.3e-28 127.5 128 53.9
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 1.2e-27 127.1 126 56.3
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 2.1e-27 126.3 126 54.8
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 2.1e-27 126.3 124 55.6
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 2.1e-27 126.3 124 55.6
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 2.7e-27 125.9 127 54.3
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 2.7e-27 125.9 126 54.8
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.8e-26 123.2 125 55.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 8.7e-26 120.9 117 57.3
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 2.5e-25 119.4 122 54.1
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 7.4e-25 117.9 117 56.4
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 8.1e-24 114.4 117 55.6
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 1.1e-23 114.0 62 91.9
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 3.1e-23 112.5 123 49.6
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 4.0e-23 112.1 115 54.8
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 4.0e-23 112.1 129 51.9
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 6.9e-23 111.3 123 52.0
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 4.9e-21 105.1 129 48.8
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 2.5e-20 102.8 128 47.7
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.7e-19 99.4 94 53.2
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.0e-18 97.4 84 60.7
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 2.3e-18 96.3 110 50.0
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 9.6e-17 90.9 44 97.7
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 8.2e-16 87.8 119 46.2
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 1.8e-15 86.7 111 46.8
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.4e-15 86.3 84 51.2
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 3.1e-15 85.9 51 76.5
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 6.9e-15 84.7 46 78.3
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-14 84.0 47 85.1
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 4.5e-14 82.0 42 83.3
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 4.5e-14 82.0 42 83.3
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 4.5e-14 82.0 68 58.8
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 5.8e-14 81.6 51 70.6
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 5.8e-14 81.6 51 70.6
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 5.8e-14 81.6 51 70.6
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 5.8e-14 81.6 51 70.6
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 5.8e-14 81.6 51 70.6
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 6.5e-13 78.2 97 49.5
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.1e-12 77.4 42 88.1
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.4e-12 77.0 96 49.0
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 2.5e-12 76.3 40 92.5
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.7e-11 72.8 126 38.1
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 2.7e-11 72.8 126 38.1
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 2.7e-11 72.8 43 83.7
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 3.5e-11 72.4 43 83.7
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 7.9e-11 71.2 36 97.2
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 2.3e-10 69.7 38 89.5
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 3.0e-10 69.3 96 44.8
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 4.3e-09 65.5 73 47.9
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 4.3e-09 65.5 73 47.9
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 7.4e-09 64.7 127 31.5
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 4.8e-08 62.0 48 68.8
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 6.3e-08 61.6 38 73.7
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-06 57.4 31 93.5
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 1.2e-06 57.4 37 64.9
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 2.0e-06 56.6 38 81.6
PGSC0003DMG400023928 Solanum tuberosum HOM05D004291 ORTHO05D005620 4.5e-06 55.5 23 100.0


User provided reference genes

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