Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g44603_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 4.3e-89 331.3 162 100.0
MBI04_g43202_MAGBIO Magnolia biondii HOM05D000725 ORTHO05D004053 1.3e-66 256.5 134 94.8
GSVIVG01032746001 Vitis vinifera HOM05D000725 ORTHO05D004053 1.8e-23 113.2 128 46.1
COL.COLO4_25795 Corchorus olitorius HOM05D000725 ORTHO05D004053 2.0e-22 109.8 147 41.5
ClCG07G004630 Citrullus lanatus HOM05D000725 ORTHO05D004053 7.7e-22 107.8 138 39.1
Nn5g29006 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.3e-21 107.1 123 46.3
Duzib114G0648 Durio zibethinus HOM05D000725 ORTHO05D004053 1.7e-21 106.7 160 41.9
Nn2g14108 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.7e-21 106.7 123 45.5
Cfa001267 Carpinus fangiana HOM05D000725 ORTHO05D004053 2.9e-21 105.9 149 40.9
Gohir.D06G166900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 2.9e-21 105.9 127 44.9
Gorai.010G194700 Gossypium raimondii HOM05D000725 ORTHO05D004053 2.9e-21 105.9 127 44.9
Nn1g09202 Nelumbo nucifera HOM05D000725 ORTHO05D004053 2.9e-21 105.9 123 46.3
Hma1.2p1_1013F.1_g247700 Hydrangea macrophylla HOM05D000725 ORTHO05D004053 3.8e-21 105.5 129 45.0
Thecc.10G009700 Theobroma cacao HOM05D000725 ORTHO05D004053 3.8e-21 105.5 147 42.9
Actinidia00658 Actinidia chinensis HOM05D000725 ORTHO05D004053 8.5e-21 104.4 150 40.0
CSS0025020 Camellia sinensis var. sinensis HOM05D000725 ORTHO05D004053 1.1e-20 104.0 124 46.8
Ciclev10033966m.g Citrus clementina HOM05D000725 ORTHO05D004053 1.1e-20 104.0 147 42.2
QL08p063892 Quercus lobata HOM05D000725 ORTHO05D004053 1.1e-20 104.0 159 41.5
CARHR153700 Cardamine hirsuta HOM05D000725 ORTHO05D004053 1.5e-20 103.6 127 40.9
Potri.008G073500 Populus trichocarpa HOM05D000725 ORTHO05D004053 1.5e-20 103.6 155 38.1
Sp7g16860 Schrenkiella parvula HOM05D000725 ORTHO05D004053 1.5e-20 103.6 148 40.5
Medtr5g083300 Medicago truncatula HOM05D000725 ORTHO05D004053 1.9e-20 103.2 151 38.4
vmacro10000 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 1.9e-20 103.2 159 37.7
AL5G20900 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 2.5e-20 102.8 124 43.5
Duzib106G0872 Durio zibethinus HOM05D000725 ORTHO05D004053 2.5e-20 102.8 127 45.7
CANSAT56G0874 Cannabis sativa HOM05D000725 ORTHO05D004053 3.2e-20 102.4 124 44.4
Ciclev10030786m.g Citrus clementina HOM05D000725 ORTHO05D004053 3.2e-20 102.4 127 44.9
Lj1A961T79 Lonicera japonica HOM05D000725 ORTHO05D004053 4.2e-20 102.1 139 41.0
Psat2g030640 Pisum sativum HOM05D000725 ORTHO05D004053 4.2e-20 102.1 164 37.8
Sed0016433 Sechium edule HOM05D000725 ORTHO05D004053 5.5e-20 101.7 127 39.4
TWI73G1060 Tripterygium wilfordii HOM05D000725 ORTHO05D004053 5.5e-20 101.7 126 42.9
Haze_17278 Corylus avellana HOM05D000725 ORTHO05D004053 7.2e-20 101.3 147 40.1
Haze_17287 Corylus avellana HOM05D000725 ORTHO05D004053 7.2e-20 101.3 147 40.1
Atru.chr12.108 Acer truncatum HOM05D000725 ORTHO05D004053 9.4e-20 100.9 127 41.7
Actinidia29727 Actinidia chinensis HOM05D000725 ORTHO05D004053 9.4e-20 100.9 122 45.1
AT5G20420 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 9.4e-20 100.9 132 40.2
Nn1g06958 Nelumbo nucifera HOM05D000725 ORTHO05D004053 1.2e-19 100.5 122 44.3
Rhsim03G0147600 Rhododendron simsii HOM05D000725 ORTHO05D004053 1.2e-19 100.5 127 42.5
AT3G42670 Arabidopsis thaliana HOM05D000725 ORTHO05D004053 1.6e-19 100.1 127 40.9
CiPaw.01G301800 Carya illinoinensis HOM05D000725 ORTHO05D004053 1.6e-19 100.1 122 45.9
FAN03G2016 Fragaria x ananassa HOM05D000725 ORTHO05D004053 2.1e-19 99.8 137 43.8
Gohir.A06G160900 Gossypium hirsutum HOM05D000725 ORTHO05D004053 2.1e-19 99.8 125 44.0
RcHm_v2.0_Chr1g0371111 Rosa chinensis HOM05D000725 ORTHO05D004053 2.1e-19 99.8 134 43.3
TPR.G8343 Trifolium pratense HOM05D000725 ORTHO05D004053 2.1e-19 99.8 130 40.0
Thhalv10024231m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 4.7e-19 98.6 140 38.6
Phvul.008G220500 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 4.7e-19 98.6 147 37.4
Sabra10G0141000 Salix brachista HOM05D000725 ORTHO05D004053 4.7e-19 98.6 155 37.4
Carub.0006s1880 Capsella rubella HOM05D000725 ORTHO05D004053 6.1e-19 98.2 132 39.4
Manes.10G007800 Manihot esculenta HOM05D000725 ORTHO05D004053 6.1e-19 98.2 151 39.7
vmacro09999 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 6.1e-19 98.2 157 38.2
Ah.16g103940 Amaranthus hybridus HOM05D000725 ORTHO05D004053 8.0e-19 97.8 122 41.8
Glyma.U027200 Glycine max HOM05D000725 ORTHO05D004053 8.0e-19 97.8 160 35.6
THA.LOC104811007 Tarenaya hassleriana HOM05D000725 ORTHO05D004053 8.0e-19 97.8 141 37.6
vmacro06943 Vaccinium macrocarpon HOM05D000725 ORTHO05D004053 8.0e-19 97.8 136 41.9
AUR62012311 Chenopodium quinoa HOM05D000725 ORTHO05D004053 1.0e-18 97.4 128 40.6
AL6G31990 Arabidopsis lyrata HOM05D000725 ORTHO05D004053 1.4e-18 97.1 132 40.2
EL10Ac2g04901 Beta vulgaris HOM05D000725 ORTHO05D004053 1.4e-18 97.1 127 40.2
Sc11g0005370 Simmondsia chinensis HOM05D000725 ORTHO05D004053 1.4e-18 97.1 124 42.7
BcaB08g36500 Brassica carinata HOM05D000725 ORTHO05D004053 1.8e-18 96.7 132 38.6
A08p12990 Brassica napus HOM05D000725 ORTHO05D004053 1.8e-18 96.7 132 40.2
BolC9t58445H Brassica oleracea HOM05D000725 ORTHO05D004053 1.8e-18 96.7 132 38.6
CAN.G830.1 Capsicum annuum HOM05D000725 ORTHO05D004053 1.8e-18 96.7 171 36.8
Lj8C62G8 Lonicera japonica HOM05D000725 ORTHO05D004053 1.8e-18 96.7 134 42.5
BcaC04g19431 Brassica carinata HOM05D000725 ORTHO05D004053 2.3e-18 96.3 132 38.6
A10p19550 Brassica napus HOM05D000725 ORTHO05D004053 2.3e-18 96.3 132 38.6
Glyma.18G023900 Glycine max HOM05D000725 ORTHO05D004053 2.3e-18 96.3 158 37.3
Hund13529 Selenicereus undatus HOM05D000725 ORTHO05D004053 2.3e-18 96.3 126 40.5
BraA10t44031Z Brassica rapa HOM05D000725 ORTHO05D004053 3.0e-18 95.9 132 38.6
BolC8t48449H Brassica oleracea HOM05D000725 ORTHO05D004053 4.0e-18 95.5 128 40.6
Peaxi162Scf00284g00316 Petunia axillaris HOM05D000725 ORTHO05D004053 4.0e-18 95.5 161 39.1
Sabra08G0054700 Salix brachista HOM05D000725 ORTHO05D004053 4.0e-18 95.5 156 36.5
VMungo0647G1332 Vigna mungo HOM05D000725 ORTHO05D004053 4.0e-18 95.5 144 35.4
C09p55760 Brassica napus HOM05D000725 ORTHO05D004053 5.2e-18 95.1 132 38.6
Ca_05997_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 5.2e-18 95.1 171 35.1
Cpa.g.sc19.122 Carica papaya HOM05D000725 ORTHO05D004053 6.8e-18 94.7 142 43.7
Cc02_g05980 Coffea canephora HOM05D000725 ORTHO05D004053 6.8e-18 94.7 130 39.2
MELO3C018395.2 Cucumis melo HOM05D000725 ORTHO05D004053 6.8e-18 94.7 138 35.5
Ca_05999_v3 Cicer arietinum L. HOM05D000725 ORTHO05D004053 8.8e-18 94.4 139 37.4
BraA08t33283Z Brassica rapa HOM05D000725 ORTHO05D004053 1.2e-17 94.0 132 39.4
FvH4_7g25190 Fragaria vesca HOM05D000725 ORTHO05D004053 1.2e-17 94.0 131 43.5
Nitab4.5_0001817g0060 Nicotiana tabacum HOM05D000725 ORTHO05D004053 1.2e-17 94.0 161 37.9
Solyc06g050510.3 Solanum lycopersicum HOM05D000725 ORTHO05D004053 1.2e-17 94.0 128 40.6
FAN10G2086 Fragaria x ananassa HOM05D000725 ORTHO05D004053 1.5e-17 93.6 137 41.6
Sp6g24000 Schrenkiella parvula HOM05D000725 ORTHO05D004053 1.5e-17 93.6 140 35.0
Sopen06g016030 Solanum pennellii HOM05D000725 ORTHO05D004053 1.5e-17 93.6 128 40.6
Glyma.02G261800 Glycine max HOM05D000725 ORTHO05D004053 2.0e-17 93.2 130 39.2
arahy.Tifrunner.gnm1.ann1.M7CALB Arachis hypogaea HOM05D000725 ORTHO05D004053 2.6e-17 92.8 130 37.7
arahy.Tifrunner.gnm1.ann1.MF2MUZ Arachis hypogaea HOM05D000725 ORTHO05D004053 3.4e-17 92.4 128 39.8
arahy.Tifrunner.gnm1.ann1.Y9Z9L7 Arachis hypogaea HOM05D000725 ORTHO05D004053 3.4e-17 92.4 128 39.8
PGSC0003DMG400023950 Solanum tuberosum HOM05D000725 ORTHO05D004053 4.4e-17 92.0 128 39.8
arahy.Tifrunner.gnm1.ann1.89IITC Arachis hypogaea HOM05D000725 ORTHO05D004053 5.7e-17 91.7 130 36.9
MSTRG.8922 Avicennia marina HOM05D000725 ORTHO05D004053 5.7e-17 91.7 124 44.4
Carub.0008s1899 Capsella rubella HOM05D000725 ORTHO05D004053 5.7e-17 91.7 124 40.3
Prupe.2G256800 Prunus persica HOM05D000725 ORTHO05D004053 5.7e-17 91.7 122 42.6
DCAR_011852 Daucus carota HOM05D000725 ORTHO05D004053 7.5e-17 91.3 124 41.9
Nitab4.5_0000058g0030 Nicotiana tabacum HOM05D000725 ORTHO05D004053 7.5e-17 91.3 128 41.4
Phvul.001G246400 Phaseolus vulgaris HOM05D000725 ORTHO05D004053 7.5e-17 91.3 130 39.2
CsaV3_5G010570 Cucumis sativus L. HOM05D000725 ORTHO05D004053 9.8e-17 90.9 143 35.7
AUR62022951 Chenopodium quinoa HOM05D000725 ORTHO05D004053 1.3e-16 90.5 128 38.3
Thhalv10012460m.g Eutrema salsugineum HOM05D000725 ORTHO05D004053 1.3e-16 90.5 127 37.8
HanXRQChr08g0221881 Helianthus annuus HOM05D000725 ORTHO05D004053 1.7e-16 90.1 128 39.1
FAN06G2284 Fragaria x ananassa HOM05D000725 ORTHO05D004053 2.2e-16 89.7 131 42.0
Lalb_Chr17g0346921 Lupinus albus HOM05D000725 ORTHO05D004053 2.2e-16 89.7 170 35.3
CARHR192380 Cardamine hirsuta HOM05D000725 ORTHO05D004053 2.8e-16 89.4 131 37.4
Lalb_Chr10g0105301 Lupinus albus HOM05D000725 ORTHO05D004053 2.8e-16 89.4 160 36.2
Lsat_1_v5_gn_8_13481 Lactuca sativa HOM05D000725 ORTHO05D004053 3.7e-16 89.0 137 38.7
LjContig00357g0008885 Lotus japonicus HOM05D000725 ORTHO05D004053 3.7e-16 89.0 148 33.1
Rhsim09G0180400 Rhododendron simsii HOM05D000725 ORTHO05D004053 3.7e-16 89.0 131 40.5
ECA233G5578 Erigeron canadensis HOM05D000725 ORTHO05D004053 4.8e-16 88.6 128 39.1
Lsat_1_v5_gn_8_13121 Lactuca sativa HOM05D000725 ORTHO05D004053 8.3e-16 87.8 134 40.3
Aqoxy7G00421 Aquilegia oxysepala HOM05D000725 ORTHO05D004053 1.4e-15 87.0 124 39.5
Lj6g0013892 Lotus japonicus HOM05D000725 ORTHO05D004053 1.8e-15 86.7 124 37.9
SGA_v2.0_scaffold618G53215 Striga asiatica HOM05D000725 ORTHO05D004053 2.4e-15 86.3 132 39.4
Lj6g0001238 Lotus japonicus HOM05D000725 ORTHO05D004053 3.1e-15 85.9 138 37.7
Oeu023910.1 Olea europaea HOM05D000725 ORTHO05D004053 3.1e-15 85.9 129 42.6
SGA_v2.0_scaffold437G51620 Striga asiatica HOM05D000725 ORTHO05D004053 3.1e-15 85.9 130 37.7
Lj1g0026032 Lotus japonicus HOM05D000725 ORTHO05D004053 4.1e-15 85.5 129 38.8
Migut.F00630 Erythranthe guttata HOM05D000725 ORTHO05D004053 5.4e-15 85.1 132 40.2
PSO765G0016 Papaver somniferum HOM05D000725 ORTHO05D004053 9.1e-15 84.3 136 37.5
Nn6g34612 Nelumbo nucifera HOM05D000725 ORTHO05D004053 3.5e-14 82.4 108 40.7
CARHR153740 Cardamine hirsuta HOM05D000725 ORTHO05D004053 4.5e-14 82.0 119 38.7
Cc06_g20020 Coffea canephora HOM05D000725 ORTHO05D004053 5.9e-14 81.6 130 36.9
SHI28808 Sapria himalayana HOM05D000725 ORTHO05D004053 1.3e-13 80.5 148 36.5
ATR0594G114 Amborella trichopoda HOM05D000725 ORTHO05D004053 1.7e-13 80.1 129 37.2
PGR044G2605 Punica granatum HOM05D000725 ORTHO05D004053 2.2e-13 79.7 119 38.7
Psat5g144960 Pisum sativum HOM05D000725 ORTHO05D004053 5.0e-13 78.6 142 34.5
HPP92_003690 Vanilla planifolia HOM05D000725 ORTHO05D004053 5.0e-13 78.6 121 39.7
Aa31LG1G14210 Aethionema arabicum HOM05D000725 ORTHO05D004053 6.5e-13 78.2 139 33.8
Medtr3g071860 Medicago truncatula HOM05D000725 ORTHO05D004053 6.5e-13 78.2 135 35.6
Nn2g14179 Nelumbo nucifera HOM05D002850 ORTHO05D004053 8.5e-13 77.8 82 43.9
PSO349G0143 Papaver somniferum HOM05D000725 ORTHO05D004053 8.5e-13 77.8 136 36.8
unitig_46.g18735 Utricularia gibba HOM05D000725 ORTHO05D004053 1.5e-12 77.0 139 36.0
Lj4g0016792 Lotus japonicus HOM05D000725 ORTHO05D004053 5.5e-12 75.1 128 37.5
Medtr7g026650 Medicago truncatula HOM05D000725 ORTHO05D004053 5.5e-12 75.1 134 36.6
Zm00001eb331510 Zea mays HOM05D000725 ORTHO05D004053 9.5e-12 74.3 124 35.5
Medtr1g081750 Medicago truncatula HOM05D000725 ORTHO05D004053 2.1e-11 73.2 133 35.3
Os07g0692600 Oryza sativa ssp. japonica HOM05D000725 ORTHO05D004053 4.7e-11 72.0 126 38.1
Potri.010G183766 Populus trichocarpa HOM05D000725 ORTHO05D004053 1.0e-10 70.9 110 40.0
Nn2g15117 Nelumbo nucifera HOM05D000725 ORTHO05D004053 5.2e-10 68.6 80 42.5
Eucgr.J00168 Eucalyptus grandis HOM05D000725 ORTHO05D004053 6.8e-10 68.2 78 44.9
Nn2g12181 Nelumbo nucifera HOM05D000725 ORTHO05D004053 5.7e-09 65.1 81 37.0
Lj1g0014164 Lotus japonicus HOM05D000725 ORTHO05D004053 6.3e-08 61.6 138 29.7
TPR.G30914 Trifolium pratense HOM05D026095 ORTHO05D004053 1.8e-07 60.1 131 32.1
CDE04G0926 Ceratophyllum demersum HOM05D000725 ORTHO05D004053 5.4e-07 58.5 82 42.7
TAR636G0222 Trochodendron aralioides HOM05D000725 ORTHO05D004053 5.4e-07 58.5 60 50.0
Carub.0005s0881 Capsella rubella HOM05D000725 ORTHO05D004053 3.5e-06 55.8 126 28.6


User provided reference genes

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