Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 2508.0 1255 100.0
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1642.5 1219 68.5
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1552.0 1222 64.5
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1464.5 1217 61.5
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1407.9 1221 60.5
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1406.0 1221 60.4
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1391.7 1210 59.2
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1367.1 1215 58.8
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1343.6 1226 56.7
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1342.8 1214 58.1
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1340.5 1209 58.0
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1340.1 1219 57.3
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1335.5 1203 58.3
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1329.3 1214 56.3
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1325.1 1214 57.3
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1323.5 1214 58.0
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1320.8 1424 51.5
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1292.3 1168 58.1
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1287.7 1224 55.1
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1281.9 1215 54.9
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1281.5 1215 56.6
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1275.8 1218 57.1
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1272.3 1250 53.9
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1271.1 1234 54.7
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1263.1 1414 50.4
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1260.7 1214 53.9
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1260.7 1213 55.6
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1260.4 1219 53.4
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1259.6 1213 55.6
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1252.7 1219 53.8
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1251.1 1214 54.9
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1248.8 1257 52.5
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1247.6 1213 55.1
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1244.2 1215 53.4
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1241.9 1210 53.6
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1241.5 1222 52.9
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1239.6 1260 52.4
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1239.2 1219 53.8
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1237.6 1258 51.5
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1224.2 1215 53.7
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1223.4 1221 52.7
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1218.4 1212 53.1
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1217.6 1223 52.9
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1216.4 1216 53.0
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 0.0e+00 1213.4 1164 56.4
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1213.0 1259 52.3
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1211.1 1213 54.0
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1210.3 1209 52.6
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1208.7 1213 52.2
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1207.6 1220 52.0
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1202.2 1216 52.9
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1201.4 1217 52.3
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1199.1 1209 51.9
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1195.6 1221 51.3
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1186.0 1209 51.2
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1184.5 1208 51.8
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1183.3 1212 52.2
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1179.9 1212 52.6
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1179.9 1225 52.1
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1178.3 1250 51.4
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1177.5 1213 51.8
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1176.0 1201 53.0
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1172.9 1213 51.7
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1167.9 1214 51.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1167.1 1212 51.7
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1164.8 1211 51.6
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1159.1 1202 52.3
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 0.0e+00 1155.2 1220 50.7
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1151.0 1206 50.8
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1150.6 1216 50.2
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1149.4 1210 50.3
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1149.0 1011 57.8
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1147.5 1223 49.8
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1144.0 1210 50.2
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1128.2 1207 50.2
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1117.8 1209 50.0
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1103.2 1094 52.8
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1103.2 1215 49.6
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1095.5 1175 50.9
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1087.0 1096 52.1
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 0.0e+00 1079.7 1207 48.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 3.1e-304 1048.9 1206 47.5
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.3e-302 1043.5 1200 47.7
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 8.0e-292 1007.7 1154 47.9
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 9.7e-290 1000.7 1247 45.9
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 2.8e-268 929.5 1149 47.1
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 8.9e-259 897.9 806 60.0
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 5.4e-256 888.6 879 54.4
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 6.7e-222 775.4 830 51.7
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 9.6e-221 771.5 717 55.1
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 2.1e-215 753.8 1146 40.1
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 9.4e-200 701.8 758 50.1
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 1.7e-193 681.0 1234 35.7
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 5.7e-173 612.8 1221 34.6
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 8.8e-166 589.0 599 51.4
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.9e-161 573.9 639 50.5
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 2.4e-147 527.7 471 59.2
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 4.3e-144 516.9 465 56.1
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 3.1e-126 457.6 387 58.4
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 6.8e-126 456.4 1145 30.7
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 5.6e-120 436.8 876 34.8
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.8e-119 434.5 428 53.5
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.1e-94 352.8 421 43.9
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 6.1e-90 337.0 554 36.1
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.8e-73 282.3 252 59.1
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 4.1e-70 271.2 331 48.0
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 2.9e-68 265.0 253 51.4
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 5.7e-64 250.8 204 60.3
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.2e-61 243.0 176 70.5
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-60 239.2 1128 25.4
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 3.7e-55 221.5 221 53.8
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.2e-37 163.3 121 67.8
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 2.7e-37 162.2 208 44.7
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 5.8e-32 144.4 212 34.9
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 2.4e-30 139.0 156 44.9
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 1.2e-16 93.6 61 73.8
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 7.6e-16 90.9 67 59.7
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 1.3e-15 90.1 64 67.2
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 2.1e-13 82.8 511 22.1
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 3.3e-11 75.5 53 60.4
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 4.3e-11 75.1 369 22.5
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 5.6e-11 74.7 53 66.0
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 6.2e-10 71.2 56 58.9
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 8.1e-10 70.9 69 55.1
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 1.1e-09 70.5 118 40.7
CDE04G1982 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 6.9e-09 67.8 52 57.7
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 1.1e-06 60.5 56 60.7


User provided reference genes

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