Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 0.0e+00 2428.3 1204 100.0
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.5e-250 869.8 1237 44.7
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 7.3e-242 841.6 1217 44.0
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.4e-239 832.8 509 86.6
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 8.7e-211 738.4 1228 40.2
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 3.0e-187 660.2 1209 37.8
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 7.4e-186 655.6 1234 37.4
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.1e-178 631.7 1187 38.0
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 7.4e-178 629.0 1180 37.8
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 3.8e-174 616.7 1179 37.5
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 1.2e-167 595.1 1182 36.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 9.4e-165 585.5 1186 36.7
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 2.2e-161 574.3 1189 34.9
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 3.7e-161 573.5 1187 35.6
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 3.7e-161 573.5 1191 35.2
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 6.3e-161 572.8 1180 36.4
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 1.8e-160 571.2 1182 35.4
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 7.0e-160 569.3 1197 34.8
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 1.3e-158 565.1 1196 35.4
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.9e-157 561.2 1197 34.8
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.9e-157 561.2 1174 35.2
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 3.2e-157 560.5 1199 35.4
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 2.2e-153 547.7 1195 35.2
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.1e-152 543.9 1146 34.9
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 2.0e-151 541.2 1174 34.8
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 4.2e-149 533.5 1139 35.4
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 1.4e-147 528.5 1178 34.4
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 8.8e-147 525.8 1171 34.1
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.9e-141 508.1 1171 33.8
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 8.0e-140 502.7 1193 33.9
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 3.0e-139 500.7 1194 33.6
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 4.0e-139 500.4 1198 33.7
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 5.0e-134 483.4 1183 33.7
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.8e-131 474.9 1147 33.2
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.7e-129 468.4 1201 32.0
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.9e-129 467.6 1201 32.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 4.9e-129 466.8 1157 32.7
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 4.9e-129 466.8 1197 32.6
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 6.3e-129 466.5 1180 33.1
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.7e-127 461.1 1159 32.6
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.1e-125 455.7 1200 31.2
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.5e-125 454.5 1193 30.6
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.2e-122 445.7 1225 31.5
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 4.4e-122 443.7 1177 31.2
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 9.8e-122 442.6 1159 30.8
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 1.3e-121 442.2 1150 31.7
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.7e-121 441.8 1186 31.8
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 4.9e-121 440.3 1141 31.8
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 6.4e-121 439.9 1203 31.1
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 4.1e-120 437.2 1159 31.6
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 7.0e-120 436.4 1186 31.0
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.0e-118 432.6 1146 32.1
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.7e-118 431.8 1150 32.2
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.3e-118 431.4 1145 31.4
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 3.0e-118 431.0 1167 31.8
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 3.0e-118 431.0 1173 31.1
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 5.2e-115 420.2 1192 31.2
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.6e-114 417.9 1174 31.6
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 5.4e-112 410.2 606 42.4
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.2e-111 409.1 915 33.7
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 7.8e-111 406.4 1138 30.5
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 1.3e-110 405.6 1187 30.6
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.6e-108 397.5 955 33.9
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 1.8e-107 395.2 1181 30.0
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 2.7e-103 381.3 1146 30.4
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 6.0e-103 380.2 1244 29.3
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-101 375.9 1181 30.1
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 1.6e-100 372.1 1190 29.5
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 2.0e-98 365.2 1180 29.0
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 9.3e-96 356.3 936 31.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 2.1e-95 355.1 1148 28.7
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 6.6e-94 350.1 1182 28.9
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 1.9e-93 348.6 1151 28.6
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.8e-91 342.0 1172 28.7
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 1.5e-90 339.0 1172 29.5
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.4e-88 331.6 1165 29.0
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.7e-86 325.5 1172 28.2
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 5.1e-86 323.9 884 31.3
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 1.1e-85 322.8 805 31.8
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 1.3e-81 309.3 1181 27.4
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 1.4e-80 305.8 1167 27.1
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.1e-79 302.0 1157 27.5
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 2.1e-79 302.0 855 30.6
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 3.5e-79 301.2 796 32.5
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 2.5e-77 295.0 785 32.0
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 1.4e-75 289.3 776 32.6
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.2e-72 278.1 755 31.9
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.8e-70 272.3 767 30.4
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.8e-70 272.3 767 30.4
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 5.1e-70 270.8 767 30.0
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-69 269.6 778 30.7
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 1.5e-66 259.2 789 30.5
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 4.5e-66 257.7 789 30.4
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 1.9e-64 252.3 743 30.1
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 5.3e-59 234.2 573 32.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 1.8e-54 219.2 441 36.7
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.7e-52 211.5 349 37.5
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 1.8e-51 209.1 184 57.1
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 3.1e-51 208.4 364 35.7
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 8.8e-46 190.3 850 26.0
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.4e-45 187.2 527 31.3
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 8.2e-44 183.7 753 26.4
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 4.1e-43 181.4 736 26.6
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.2e-42 179.9 766 24.7
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.9e-41 175.3 167 52.1
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 5.0e-41 174.5 312 33.0
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 1.1e-40 173.3 835 26.8
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 5.2e-38 164.5 1130 22.7
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 2.6e-37 162.2 558 28.7
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 3.3e-37 161.8 748 27.1
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 3.3e-37 161.8 344 31.4
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 4.8e-36 157.9 821 26.2
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 5.3e-35 154.5 171 46.2
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 2.7e-34 152.1 241 40.7
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.7e-34 152.1 164 50.6
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 5.9e-34 151.0 382 34.0
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.2e-33 149.1 169 48.5
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 2.9e-33 148.7 187 43.9
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 5.5e-32 144.4 828 24.2
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 3.0e-30 138.7 155 45.2
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.4e-29 134.8 134 49.3
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 4.4e-29 134.8 239 37.7
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 5.7e-29 134.4 836 24.2
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.2e-28 132.5 140 47.1
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.8e-28 132.1 328 28.4
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.1e-27 130.2 179 39.7
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 7.0e-27 127.5 169 39.1
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 4.5e-26 124.8 371 28.0
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.0e-25 123.6 346 28.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.6e-23 116.3 138 42.0
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.0e-22 113.6 135 43.0
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 3.0e-22 112.1 153 40.5
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.8e-20 105.5 831 22.6
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.5e-16 92.4 102 49.0
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 8.0e-15 87.4 201 32.3
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.0e-14 87.0 62 59.7
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.3e-14 85.9 64 59.4
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 9.2e-11 73.9 550 22.5
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 1.3e-09 70.1 198 32.8
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 4.7e-07 61.6 114 36.0
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.8e-06 59.7 58 41.4
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 3.1e-06 58.9 68 44.1
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 5.2e-06 58.2 68 44.1


User provided reference genes

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