Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1352.0 678 100.0
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1156.0 653 88.2
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1155.6 656 87.3
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1151.3 663 87.0
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1129.0 665 84.7
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1129.0 673 84.0
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1126.7 673 83.8
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1124.8 656 85.7
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1120.9 645 86.4
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1120.5 647 85.9
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1114.0 662 84.3
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1113.2 648 85.5
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1113.2 665 83.3
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 670 83.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1112.1 653 84.7
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1111.7 647 85.0
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1110.9 653 84.8
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1110.5 642 85.8
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1110.1 663 83.7
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1109.0 642 85.8
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1108.2 645 85.1
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1107.8 698 80.7
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1107.4 655 84.4
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1106.7 671 83.2
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1105.9 665 83.3
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1105.9 640 85.3
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 647 84.9
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1105.1 645 84.3
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1104.7 647 84.7
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 645 85.0
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1102.8 648 83.8
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1100.9 639 85.1
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1099.7 652 83.6
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 647 84.2
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1098.6 662 82.5
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1098.2 652 83.1
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1097.8 640 84.7
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1094.3 636 84.4
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1094.3 652 82.8
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 651 82.8
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 623 86.5
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1093.6 640 83.9
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 660 82.6
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1092.8 648 84.3
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1088.6 661 81.8
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1087.0 655 82.9
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1085.9 674 80.9
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1085.1 660 81.2
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1083.6 658 80.5
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1082.0 626 85.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 673 80.7
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 709 77.3
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1081.6 709 77.3
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1080.5 640 84.7
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1079.3 680 79.7
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 4.6e-312 1074.7 719 77.1
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 1.9e-311 1072.0 646 81.4
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 2.0e-310 1068.5 638 83.4
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 2.7e-310 1068.1 646 81.1
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 6.0e-310 1067.0 647 81.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 1.1e-308 1062.8 638 82.6
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 1.5e-308 1062.4 646 82.0
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 1.9e-308 1062.0 660 81.4
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 2.5e-308 1061.6 641 82.1
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 7.3e-308 1060.1 646 82.0
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 7.3e-308 1060.1 646 82.0
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 1.6e-307 1058.9 659 78.9
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 2.8e-307 1058.1 641 81.7
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 2.8e-307 1058.1 638 82.1
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 8.1e-307 1056.6 641 81.6
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 6.8e-306 1053.5 665 80.5
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 1.2e-305 1052.7 664 80.1
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 2.2e-304 1048.5 651 80.5
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 3.5e-302 1041.2 636 82.4
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.0e-301 1039.6 649 80.9
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 3.9e-301 1037.7 644 80.6
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.5e-300 1035.8 854 65.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 2.8e-299 1031.6 646 80.2
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 6.9e-298 1026.9 751 70.7
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 5.4e-295 1017.3 659 78.1
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.7e-293 1012.3 647 79.8
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 6.4e-288 993.8 717 72.8
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 2.1e-283 978.8 644 75.5
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 3.4e-281 971.5 588 82.5
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 8.4e-280 966.8 624 75.6
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 3.1e-274 948.3 565 83.0
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 1.7e-272 942.6 625 74.7
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.6e-262 909.4 602 74.6
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 4.6e-262 907.9 621 72.9
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 2.3e-261 905.6 519 85.7
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 6.7e-261 904.0 527 83.1
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 7.4e-260 900.6 524 85.3
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 5.3e-258 894.4 517 84.5
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.6e-252 875.5 493 86.0
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 2.6e-252 875.5 492 87.4
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 4.4e-252 874.8 626 70.3
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.3e-251 873.2 600 74.0
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 9.1e-250 867.1 485 87.2
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.9e-240 835.5 551 76.4
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.1e-239 833.6 666 64.1
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 6.8e-221 771.2 429 86.5
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 7.5e-220 767.7 434 86.2
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.8e-214 749.2 505 76.4
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 1.2e-212 743.8 610 63.1
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.6e-185 653.7 407 78.9
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 1.7e-184 650.2 387 81.4
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.3e-179 634.0 352 86.9
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.4e-178 630.6 407 78.4
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 6.9e-173 611.7 401 76.3
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.4e-141 507.7 289 84.8
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.9e-139 500.0 447 61.5
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-129 468.0 593 44.4
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.7e-121 439.5 653 38.7
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 4.9e-110 402.9 358 61.7
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 3.5e-108 396.7 657 39.4
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 8.6e-107 392.1 366 59.0
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.8e-96 357.8 476 43.5
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 2.0e-95 354.4 218 82.1
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 2.4e-93 347.4 326 58.9
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 2.9e-78 297.4 169 87.6
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.3e-70 271.9 161 80.7
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.3e-58 230.7 162 67.3
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 9.6e-58 229.2 192 62.0
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 5.5e-53 213.4 120 86.7
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 3.2e-45 187.6 114 84.2
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.6e-39 167.9 182 51.6
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 2.7e-36 157.9 184 45.7
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 6.1e-36 156.8 112 68.8
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 8.8e-35 152.9 79 92.4
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.1e-34 152.5 263 41.1
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 5.7e-34 150.2 95 75.8
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 2.2e-33 148.3 143 56.6
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 5.9e-31 140.2 137 58.4
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.2e-30 138.3 106 69.8
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 6.5e-30 136.7 71 80.3
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 2.7e-28 131.3 83 81.9
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 4.7e-28 130.6 96 74.0
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 6.1e-28 130.2 68 91.2
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.9e-24 116.7 93 64.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.0e-19 102.8 60 83.3
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 9.1e-16 89.7 47 76.6
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.5e-15 87.8 61 73.8
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.2e-14 85.1 48 75.0
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.1e-13 82.8 77 55.8


User provided reference genes

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