Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI03_g10293_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D020332 1.5e-58 229.6 136 100.0
MBI04_g22061_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 5.5e-29 131.3 72 84.7
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 2.6e-23 112.5 77 70.1
Nn4g22801 Nelumbo nucifera HOM05D002303 ORTHO05D006504 2.6e-23 112.5 72 76.4
TAR680G0002 Trochodendron aralioides HOM05D002303 ORTHO05D006504 5.9e-23 111.3 72 73.6
MBI03_g10297_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D006504 1.3e-22 110.2 63 77.8
ClCG05G025310 Citrullus lanatus HOM05D002303 ORTHO05D006504 2.2e-22 109.4 72 70.8
MELO3C011999.2 Cucumis melo HOM05D002303 ORTHO05D006504 2.2e-22 109.4 72 70.8
CsaV3_5G031590 Cucumis sativus L. HOM05D002303 ORTHO05D006504 2.2e-22 109.4 72 70.8
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 2.2e-22 109.4 72 70.8
CSS0022544 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 2.9e-22 109.0 72 70.8
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 3.8e-22 108.6 64 75.0
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 3.8e-22 108.6 59 81.4
CANSAT64G0961 Cannabis sativa HOM05D002303 ORTHO05D006504 3.8e-22 108.6 72 70.8
TAR680G0003 Trochodendron aralioides HOM05D002303 ORTHO05D020332 3.8e-22 108.6 65 75.4
CiPaw.06G072200 Carya illinoinensis HOM05D002303 ORTHO05D006504 5.0e-22 108.2 72 70.8
CDE10G0655 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 5.0e-22 108.2 70 70.0
CDE10G0556 Ceratophyllum demersum HOM05D002303 ORTHO05D006504 6.5e-22 107.8 59 79.7
Aqoxy3G02980 Aquilegia oxysepala HOM05D002303 ORTHO05D006504 8.5e-22 107.5 77 66.2
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 8.5e-22 107.5 77 66.2
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.1e-21 107.1 69 66.7
Lalb_Chr02g0150771 Lupinus albus HOM05D002303 ORTHO05D006504 1.4e-21 106.7 77 67.5
vmacro16253 Vaccinium macrocarpon HOM05D002303 ORTHO05D006504 1.9e-21 106.3 72 68.1
Sed0001575 Sechium edule HOM05D002303 ORTHO05D006504 2.5e-21 105.9 72 69.4
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 4.2e-21 105.1 72 70.8
Actinidia15045 Actinidia chinensis HOM05D002303 ORTHO05D006504 5.5e-21 104.8 71 67.6
Lsat_1_v5_gn_9_45920 Lactuca sativa HOM05D002303 ORTHO05D006504 5.5e-21 104.8 77 63.6
Potri.008G172800 Populus trichocarpa HOM05D002303 ORTHO05D006504 7.2e-21 104.4 72 69.4
HanXRQChr15g0490111 Helianthus annuus HOM05D002303 ORTHO05D006504 9.4e-21 104.0 72 66.7
Lj3A1052T30 Lonicera japonica HOM05D002303 ORTHO05D006504 9.4e-21 104.0 72 68.1
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 9.4e-21 104.0 60 75.0
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 9.4e-21 104.0 72 68.1
Lj5g0024759 Lotus japonicus HOM05D002303 ORTHO05D006504 1.6e-20 103.2 77 62.3
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 1.6e-20 103.2 69 63.8
Prupe.1G254100 Prunus persica HOM05D002303 ORTHO05D006504 1.6e-20 103.2 72 66.7
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 1.6e-20 103.2 72 68.1
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 2.1e-20 102.8 72 68.1
PSO063G5744 Papaver somniferum HOM05D002303 ORTHO05D006504 2.1e-20 102.8 72 69.4
PSO832G3043 Papaver somniferum HOM05D002303 ORTHO05D006504 2.1e-20 102.8 72 69.4
Glyma.10G192200 Glycine max HOM05D002303 ORTHO05D006504 2.7e-20 102.4 77 63.6
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 2.7e-20 102.4 72 69.4
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 3.6e-20 102.1 72 65.3
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 4.6e-20 101.7 72 65.3
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 4.6e-20 101.7 72 65.3
Rhsim07G0188400 Rhododendron simsii HOM05D002303 ORTHO05D006504 4.6e-20 101.7 77 62.3
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 6.1e-20 101.3 72 68.1
Sc04g0009110 Simmondsia chinensis HOM05D002303 ORTHO05D006504 6.1e-20 101.3 71 64.8
Ca_09780_v3 Cicer arietinum L. HOM05D002303 ORTHO05D006504 7.9e-20 100.9 74 60.8
FvH4_4g34510 Fragaria vesca HOM05D002303 ORTHO05D006504 7.9e-20 100.9 72 63.9
FAN12G1541 Fragaria x ananassa HOM05D002303 ORTHO05D006504 7.9e-20 100.9 72 63.9
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 7.9e-20 100.9 72 68.1
Psat6g141280 Pisum sativum HOM05D002303 ORTHO05D006504 7.9e-20 100.9 74 60.8
FAN07G1287 Fragaria x ananassa HOM05D002303 ORTHO05D006504 1.0e-19 100.5 72 62.5
Glyma.20G198200 Glycine max HOM05D002303 ORTHO05D006504 1.0e-19 100.5 77 62.3
Medtr4g102520 Medicago truncatula HOM05D002303 ORTHO05D006504 1.0e-19 100.5 74 60.8
RcHm_v2.0_Chr4g0443891 Rosa chinensis HOM05D002303 ORTHO05D006504 1.0e-19 100.5 72 66.7
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 1.0e-19 100.5 55 78.2
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.4e-19 100.1 68 69.1
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 1.4e-19 100.1 72 65.3
Medtr1g072740 Medicago truncatula HOM05D002303 ORTHO05D006504 1.4e-19 100.1 74 59.5
Phvul.007G134200 Phaseolus vulgaris HOM05D002303 ORTHO05D006504 1.4e-19 100.1 77 62.3
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 1.4e-19 100.1 72 66.7
Cpa.g.sc292.8 Carica papaya HOM05D002303 ORTHO05D006504 1.8e-19 99.8 72 63.9
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.8e-19 99.8 72 65.3
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 1.8e-19 99.8 77 62.3
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 2.3e-19 99.4 69 66.7
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 2.3e-19 99.4 69 66.7
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 2.3e-19 99.4 72 65.3
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 2.3e-19 99.4 55 76.4
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 3.0e-19 99.0 77 59.7
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 3.0e-19 99.0 71 67.6
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 3.0e-19 99.0 69 60.9
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 3.9e-19 98.6 77 59.7
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 3.9e-19 98.6 76 63.2
Hma1.2p1_0867F.1_g230190 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 3.9e-19 98.6 72 63.9
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 3.9e-19 98.6 72 63.9
PSO782G3482 Papaver somniferum HOM05D002303 ORTHO05D006504 3.9e-19 98.6 72 65.3
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 3.9e-19 98.6 69 60.9
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 3.9e-19 98.6 69 60.9
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 5.1e-19 98.2 72 62.5
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 5.1e-19 98.2 72 65.3
TPR.G18556 Trifolium pratense HOM05D002303 ORTHO05D006504 5.1e-19 98.2 74 58.1
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 6.7e-19 97.8 69 65.2
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 6.7e-19 97.8 74 62.2
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 6.7e-19 97.8 69 59.4
QL07p042264 Quercus lobata HOM05D002303 ORTHO05D006504 6.7e-19 97.8 55 74.5
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 8.8e-19 97.4 69 65.2
Oeu044823.1 Olea europaea HOM05D002303 ORTHO05D006504 8.8e-19 97.4 69 59.4
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 1.1e-18 97.1 69 63.8
Aa31LG1G4340 Aethionema arabicum HOM05D002303 ORTHO05D006504 1.5e-18 96.7 69 63.8
EL10Ac6g13671 Beta vulgaris HOM05D002303 ORTHO05D006504 1.9e-18 96.3 65 61.5
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.9e-18 96.3 55 72.7
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.9e-18 96.3 55 72.7
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.9e-18 96.3 55 72.7
HPP92_008340 Vanilla planifolia HOM05D002303 ORTHO05D006504 2.5e-18 95.9 76 57.9
Ah.03g132680 Amaranthus hybridus HOM05D002303 ORTHO05D006504 3.3e-18 95.5 55 69.1
Ciclev10031042m.g Citrus clementina HOM05D002303 ORTHO05D006504 3.3e-18 95.5 70 61.4
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 3.3e-18 95.5 69 59.4
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 4.3e-18 95.1 71 64.8
unitig_26.g10342 Utricularia gibba HOM05D002303 ORTHO05D006504 4.3e-18 95.1 77 59.7
Ciclev10019296m.g Citrus clementina HOM05D002303 ORTHO05D006504 5.7e-18 94.7 70 61.4
THA.LOC104823641 Tarenaya hassleriana HOM05D002303 ORTHO05D006504 7.4e-18 94.4 71 64.8
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 9.7e-18 94.0 74 58.1
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 9.7e-18 94.0 71 64.8
AagrBONN_evm.TU.Sc2ySwM_228.161 Anthoceros agrestis HOM05D002303 ORTHO05D006504 1.3e-17 93.6 60 66.7
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 1.3e-17 93.6 97 54.6
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 1.3e-17 93.6 97 54.6
Thhalv10007215m.g Eutrema salsugineum HOM05D002303 ORTHO05D006504 2.8e-17 92.4 71 64.8
DCAR_007090 Daucus carota HOM05D002303 ORTHO05D006504 3.7e-17 92.0 93 52.7
Hund05993 Selenicereus undatus HOM05D002303 ORTHO05D006504 3.7e-17 92.0 54 68.5
Migut.L01412 Erythranthe guttata HOM05D002303 ORTHO05D006504 4.8e-17 91.7 72 59.7
ECA246G1022 Erigeron canadensis HOM05D002303 ORTHO05D006504 6.3e-17 91.3 97 52.6
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 1.1e-16 90.5 74 55.4
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 1.8e-16 89.7 99 52.5
Mapoly0001s0085 Marchantia polymorpha HOM05D002303 ORTHO05D006504 3.1e-16 89.0 60 63.3
MSTRG.7897 Avicennia marina HOM05D002303 ORTHO05D006504 5.3e-16 88.2 101 48.5
SalBow2G0957 Salvia bowleyana HOM05D002303 ORTHO05D006504 5.3e-16 88.2 98 46.9
Dinv28378 Davidia involucrata HOM05D002303 ORTHO05D020332 3.4e-15 85.5 64 60.9
CARHR005850 Cardamine hirsuta HOM05D002303 ORTHO05D020332 4.5e-15 85.1 55 67.3
Pp3c5_27650 Physcomitrium patens HOM05D002303 ORTHO05D006504 1.7e-14 83.2 60 56.7
AUR62005376 Chenopodium quinoa HOM05D002303 ORTHO05D006504 5.0e-14 81.6 46 71.7
AUR62014039 Chenopodium quinoa HOM05D002303 ORTHO05D006504 5.0e-14 81.6 46 71.7
CSS0030675 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.9e-13 79.7 54 68.5
SGA_v2.0_scaffold8G04222 Striga asiatica HOM05D002303 ORTHO05D006504 2.5e-13 79.3 98 41.8
SGA_v2.0_scaffold165G38248 Striga asiatica HOM05D002303 ORTHO05D006504 1.6e-12 76.6 98 41.8
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 1.8e-11 73.2 70 50.0
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 1.8e-11 73.2 70 50.0
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 3.9e-11 72.0 58 46.6
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 2.0e-10 69.7 60 51.7
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.2e-09 66.2 60 50.0
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 8.5e-06 54.3 31 74.2


User provided reference genes

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