Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI02_g05670_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 0.0e+00 1355.9 692 100.0
TAR633G0763 Trochodendron aralioides HOM05D003531 ORTHO05D004354 1.1e-194 684.1 658 59.3
MBI04_g44436_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 1.5e-175 620.5 655 55.9
Nn2g15298 Nelumbo nucifera HOM05D003531 ORTHO05D004354 7.5e-175 618.2 668 55.1
Nn7g36242 Nelumbo nucifera HOM05D003531 ORTHO05D004354 6.4e-174 615.1 653 53.1
Dinv09345 Davidia involucrata HOM05D003531 ORTHO05D004354 2.8e-169 599.7 660 52.4
Dinv43430 Davidia involucrata HOM05D003531 ORTHO05D004354 5.2e-168 595.5 660 52.1
QL04p008498 Quercus lobata HOM05D003531 ORTHO05D004354 3.9e-163 579.3 660 50.9
vmacro21192 Vaccinium macrocarpon HOM05D003531 ORTHO05D004354 5.8e-159 565.5 654 50.6
CSS0044266 Camellia sinensis var. sinensis HOM05D003531 ORTHO05D004354 2.4e-157 560.1 652 51.1
CANSAT80G0550 Cannabis sativa HOM05D003531 ORTHO05D004354 1.0e-155 554.7 662 49.8
TWI09G1532 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 1.3e-155 554.3 662 49.8
Haze_03181 Corylus avellana HOM05D003531 ORTHO05D004354 1.7e-155 553.9 635 51.5
Aqoxy2G00174 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 3.0e-155 553.1 676 49.0
TWI73G0346 Tripterygium wilfordii HOM05D003531 ORTHO05D004354 3.0e-155 553.1 662 49.1
Actinidia20660 Actinidia chinensis HOM05D003531 ORTHO05D004354 3.9e-155 552.7 659 49.6
Ciclev10030635m.g Citrus clementina HOM05D003531 ORTHO05D004354 5.1e-155 552.4 657 50.5
Prupe.2G016600 Prunus persica HOM05D003531 ORTHO05D004354 1.1e-154 551.2 662 51.2
PSO339G4096 Papaver somniferum HOM05D003531 ORTHO05D004354 2.5e-154 550.1 657 51.3
PSO384G4091 Papaver somniferum HOM05D003531 ORTHO05D004354 7.3e-154 548.5 660 51.5
Eucgr.G03370 Eucalyptus grandis HOM05D003531 ORTHO05D004354 3.6e-153 546.2 660 48.8
Gorai.004G171500 Gossypium raimondii HOM05D003531 ORTHO05D004354 1.3e-150 537.7 665 49.0
Atru.chr11.2606 Acer truncatum HOM05D003531 ORTHO05D004354 2.2e-150 537.0 651 48.7
Rhsim01G0128500 Rhododendron simsii HOM05D003531 ORTHO05D004354 2.9e-150 536.6 662 49.7
Gohir.D08G164500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 6.4e-150 535.4 665 49.0
Manes.07G007000 Manihot esculenta HOM05D003531 ORTHO05D004354 3.2e-149 533.1 656 50.0
Gohir.A08G143500 Gossypium hirsutum HOM05D003531 ORTHO05D004354 4.1e-149 532.7 665 48.4
COL.COLO4_04865 Corchorus olitorius HOM05D003531 ORTHO05D004354 2.7e-148 530.0 663 48.9
ClCG09G004050 Citrullus lanatus HOM05D003531 ORTHO05D004354 3.5e-148 529.6 657 48.9
Lj9C634G4 Lonicera japonica HOM05D003531 ORTHO05D004354 3.5e-148 529.6 658 48.6
Thecc.01G409300 Theobroma cacao HOM05D003531 ORTHO05D004354 4.6e-148 529.3 662 48.3
Manes.10G140700 Manihot esculenta HOM05D003531 ORTHO05D004354 7.8e-148 528.5 664 49.2
Cc02_g28130 Coffea canephora HOM05D003531 ORTHO05D004354 3.9e-147 526.2 665 47.4
PGR031G1295 Punica granatum HOM05D003531 ORTHO05D004354 5.1e-147 525.8 659 47.3
Potri.001G264800 Populus trichocarpa HOM05D003531 ORTHO05D004354 8.6e-147 525.0 657 48.4
RcHm_v2.0_Chr1g0316671 Rosa chinensis HOM05D003531 ORTHO05D004354 2.5e-146 523.5 655 48.9
MD02G1308700 Malus domestica HOM05D003531 ORTHO05D004354 3.3e-146 523.1 660 49.7
Sabra16G0162700 Salix brachista HOM05D003531 ORTHO05D004354 2.1e-145 520.4 654 48.6
CsaV3_7G030950 Cucumis sativus L. HOM05D003531 ORTHO05D004354 6.2e-145 518.8 656 48.3
MD07G1013100 Malus domestica HOM05D003531 ORTHO05D004354 1.1e-144 518.1 659 49.2
MELO3C023561.2 Cucumis melo HOM05D003531 ORTHO05D004354 1.4e-144 517.7 656 48.0
Duzib138G1641 Durio zibethinus HOM05D003531 ORTHO05D004354 1.5e-143 514.2 654 47.9
Hma1.2p1_0495F.1_g165700 Hydrangea macrophylla HOM05D003531 ORTHO05D004354 4.4e-143 512.7 652 46.8
Sed0002980 Sechium edule HOM05D003531 ORTHO05D004354 7.6e-143 511.9 656 47.1
Cpa.g.sc125.24 Carica papaya HOM05D003531 ORTHO05D004354 2.9e-142 510.0 658 48.2
FAN03G2678 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.8e-142 509.6 662 47.7
Sed0001045 Sechium edule HOM05D003531 ORTHO05D004354 1.2e-140 504.6 662 46.1
AUR62023077 Chenopodium quinoa HOM05D003531 ORTHO05D004354 2.7e-140 503.4 654 46.9
FAN01G0774 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.5e-140 503.1 655 47.5
FvH4_7g01200 Fragaria vesca HOM05D003531 ORTHO05D004354 1.7e-139 500.7 660 47.6
arahy.Tifrunner.gnm1.ann1.V60VE2 Arachis hypogaea HOM05D003531 ORTHO05D004354 2.3e-139 500.4 653 46.6
VMungo1127G0476 Vigna mungo HOM05D003531 ORTHO05D004354 2.3e-139 500.4 656 47.0
FAN10G4005 Fragaria x ananassa HOM05D003531 ORTHO05D004354 5.1e-139 499.2 660 47.6
Ca_19577_v3 Cicer arietinum L. HOM05D003531 ORTHO05D004354 6.6e-139 498.8 657 47.6
Lj3g0024838 Lotus japonicus HOM05D003531 ORTHO05D004354 8.7e-139 498.4 665 46.2
EL10Ac2g04341 Beta vulgaris HOM05D003531 ORTHO05D004354 1.9e-138 497.3 644 46.9
arahy.Tifrunner.gnm1.ann1.L35I2V Arachis hypogaea HOM05D003531 ORTHO05D004354 2.5e-138 496.9 653 45.8
AUR62043479 Chenopodium quinoa HOM05D003531 ORTHO05D004354 3.3e-138 496.5 654 46.6
Psat0s1245g0040 Pisum sativum HOM05D003531 ORTHO05D004354 1.3e-137 494.6 661 46.3
Lj3g0012564 Lotus japonicus HOM05D003531 ORTHO05D004354 2.1e-137 493.8 662 46.1
TPR.G3645 Trifolium pratense HOM05D003531 ORTHO05D004354 1.1e-136 491.5 661 46.1
Glyma.12G007900 Glycine max HOM05D003531 ORTHO05D004354 1.4e-136 491.1 656 45.9
DCAR_029680 Daucus carota HOM05D003531 ORTHO05D004354 9.0e-136 488.4 661 45.4
Gohir.D08G039066 Gossypium hirsutum HOM05D003531 ORTHO05D004354 2.0e-135 487.3 661 47.0
CDE05G0662 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 4.5e-135 486.1 648 46.0
Nitab4.5_0002918g0090 Nicotiana tabacum HOM05D003531 ORTHO05D004833 4.5e-135 486.1 657 45.1
CiPaw.13G006400 Carya illinoinensis HOM05D003531 ORTHO05D004354 5.8e-135 485.7 613 48.1
Phvul.011G010000 Phaseolus vulgaris HOM05D003531 ORTHO05D004354 5.8e-135 485.7 655 46.4
Glyma.09G228600 Glycine max HOM05D003531 ORTHO05D004354 9.9e-135 485.0 654 46.2
Sc11g0009100 Simmondsia chinensis HOM05D003531 ORTHO05D004354 1.3e-134 484.6 659 44.9
Solyc01g087430.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.3e-134 484.6 661 45.2
Sopen01g034370 Solanum pennellii HOM05D003531 ORTHO05D004354 1.3e-134 484.6 661 45.2
Gohir.A08G028300 Gossypium hirsutum HOM05D003531 ORTHO05D004354 8.4e-134 481.9 659 46.0
Nitab4.5_0008353g0020 Nicotiana tabacum HOM05D003957 ORTHO05D004833 1.9e-133 480.7 654 45.1
Sabra09G0043900 Salix brachista HOM05D003531 ORTHO05D004354 2.4e-133 480.3 661 45.2
Potri.009G059700 Populus trichocarpa HOM05D003531 ORTHO05D004354 3.2e-133 479.9 660 45.5
FAN06G4268 Fragaria x ananassa HOM05D003531 ORTHO05D004354 3.5e-132 476.5 660 46.7
Gorai.004G037700 Gossypium raimondii HOM05D003531 ORTHO05D004354 4.6e-132 476.1 661 46.3
Potri.009G059500 Populus trichocarpa HOM05D003531 ORTHO05D004354 5.6e-130 469.2 663 44.5
CiPaw.14G001000 Carya illinoinensis HOM05D003531 ORTHO05D004354 7.4e-130 468.8 650 45.1
HPP92_009589 Vanilla planifolia HOM05D003531 ORTHO05D004354 2.1e-129 467.2 659 44.0
Solyc01g087420.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 7.6e-127 458.8 657 44.0
Lalb_Chr25g0282961 Lupinus albus HOM05D003531 ORTHO05D004354 4.2e-125 453.0 658 43.9
AUR62009395 Chenopodium quinoa HOM05D003531 ORTHO05D004354 2.1e-124 450.7 653 44.9
Lalb_Chr19g0140301 Lupinus albus HOM05D003531 ORTHO05D004354 4.6e-124 449.5 656 44.1
Sopen01g034360 Solanum pennellii HOM05D003531 ORTHO05D004354 3.0e-123 446.8 666 42.3
Medtr4g037745 Medicago truncatula HOM05D003531 ORTHO05D004354 6.7e-123 445.7 672 43.9
arahy.Tifrunner.gnm1.ann1.T4LWN5 Arachis hypogaea HOM05D003531 ORTHO05D004354 5.6e-122 442.6 671 42.2
Peaxi162Scf00953g00513 Petunia axillaris HOM05D003531 ORTHO05D004354 2.1e-121 440.7 665 43.3
arahy.Tifrunner.gnm1.ann1.2BQ2P0 Arachis hypogaea HOM05D003531 ORTHO05D004354 3.7e-121 439.9 661 41.9
ATR0332G091 Amborella trichopoda HOM05D003531 ORTHO05D004354 1.1e-120 438.3 651 43.5
Sc23g0005960 Simmondsia chinensis HOM05D003531 ORTHO05D004354 1.4e-120 438.0 664 43.1
THA.LOC104827429 Tarenaya hassleriana HOM05D003531 ORTHO05D004354 5.3e-120 436.0 650 43.7
Lalb_Chr01g0000391 Lupinus albus HOM05D003531 ORTHO05D004354 5.8e-119 432.6 662 44.4
GSVIVG01032131001 Vitis vinifera HOM05D003531 ORTHO05D004354 8.4e-118 428.7 457 53.0
Oeu063180.2 Olea europaea HOM05D003531 ORTHO05D004354 1.6e-113 414.5 659 41.7
TAR369G0316 Trochodendron aralioides HOM05D003531 ORTHO05D004354 5.3e-112 409.5 562 45.7
Hund19803 Selenicereus undatus HOM05D003531 ORTHO05D004354 4.6e-108 396.4 654 41.6
MSTRG.5029 Avicennia marina HOM05D003531 ORTHO05D004354 1.9e-106 391.0 666 38.9
Lsat_1_v5_gn_4_31500 Lactuca sativa HOM05D003531 ORTHO05D004354 2.4e-104 384.0 637 39.7
AL3G19400 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 9.1e-104 382.1 651 40.4
AT3G08020 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.2e-103 381.7 651 41.2
Sp3g06930 Schrenkiella parvula HOM05D003531 ORTHO05D004354 1.2e-103 381.7 657 40.3
Thhalv10020119m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 1.5e-103 381.3 651 40.7
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 2.0e-103 380.9 652 41.1
BolC1t05508H Brassica oleracea HOM05D003531 ORTHO05D004354 5.9e-103 379.4 650 39.8
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 5.9e-103 379.4 555 44.7
ECA248G0343 Erigeron canadensis HOM05D003531 ORTHO05D004354 2.9e-102 377.1 644 38.7
Carub.0003s0760 Capsella rubella HOM05D003531 ORTHO05D004354 1.9e-101 374.4 651 39.8
BcaC09g47972 Brassica carinata HOM05D003531 ORTHO05D004354 3.2e-101 373.6 650 39.4
BraA01t04348Z Brassica rapa HOM05D003531 ORTHO05D004354 1.2e-100 371.7 651 40.1
CARHR082750 Cardamine hirsuta HOM05D003531 ORTHO05D004354 2.1e-100 370.9 651 40.2
HanXRQChr09g0251321 Helianthus annuus HOM05D003531 ORTHO05D004354 3.9e-99 366.7 644 38.7
Actinidia21545 Actinidia chinensis HOM05D003531 ORTHO05D004354 1.3e-97 361.7 383 53.3
HanXRQChr17g0563011 Helianthus annuus HOM05D003531 ORTHO05D004354 5.9e-95 352.8 651 37.2
Os12g0527800 Oryza sativa ssp. japonica HOM05D003531 ORTHO05D004354 1.0e-94 352.1 658 37.8
Zm00001eb410840 Zea mays HOM05D003531 ORTHO05D004354 1.4e-93 348.2 658 37.8
SGA_v2.0_scaffold24G10668 Striga asiatica HOM05D003531 ORTHO05D004354 9.4e-93 345.5 681 38.2
ECA234G4456 Erigeron canadensis HOM05D003531 ORTHO05D004354 1.8e-91 341.3 650 36.2
Sopen01g034460 Solanum pennellii HOM05D003531 ORTHO05D004354 2.3e-91 340.9 653 36.6
Hund21485 Selenicereus undatus HOM05D003531 ORTHO05D004354 3.0e-91 340.5 561 40.5
Sopen01g034350 Solanum pennellii HOM05D003531 ORTHO05D004354 3.7e-89 333.6 694 35.3
Aa31LG10G7170 Aethionema arabicum HOM05D003531 ORTHO05D004354 1.2e-82 312.0 657 36.8
Solyc01g087320.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 6.3e-81 306.2 764 31.8
Zm00001eb137800 Zea mays HOM05D003531 ORTHO05D004354 3.7e-73 280.4 574 37.3
Aqoxy2G00168 Aquilegia oxysepala HOM05D003531 ORTHO05D004354 1.4e-72 278.5 262 57.3
AL5G32650 Arabidopsis lyrata HOM05D003531 ORTHO05D004354 7.0e-72 276.2 651 32.6
Carub.0005s1842 Capsella rubella HOM05D003531 ORTHO05D004354 3.8e-70 270.4 650 32.3
Thhalv10010234m.g Eutrema salsugineum HOM05D003531 ORTHO05D004354 5.0e-70 270.0 650 33.4
CARHR161810 Cardamine hirsuta HOM05D003531 ORTHO05D004354 2.5e-69 267.7 650 32.2
unitig_8.g3623 Utricularia gibba HOM05D003531 ORTHO05D004354 1.2e-68 265.4 661 33.0
RcHm_v2.0_Chr6g0268061 Rosa chinensis HOM05D003531 ORTHO05D004354 1.0e-67 262.3 397 42.3
BolC8t50353H Brassica oleracea HOM05D003531 ORTHO05D004354 5.2e-67 260.0 650 32.5
Migut.N01608 Erythranthe guttata HOM05D003531 ORTHO05D004354 3.4e-66 257.3 360 43.6
BcaNung06091 Brassica carinata HOM05D003531 ORTHO05D004354 2.2e-65 254.6 650 31.7
C08p27360 Brassica napus HOM05D003531 ORTHO05D004354 2.2e-65 254.6 650 31.7
A09p45150 Brassica napus HOM05D003531 ORTHO05D004354 1.4e-64 251.9 650 31.4
BraA09t39978Z Brassica rapa HOM05D003531 ORTHO05D004354 1.8e-64 251.5 650 31.2
Sopen01g034440 Solanum pennellii HOM05D003531 ORTHO05D004354 1.3e-62 245.4 642 32.2
Sp5g10200 Schrenkiella parvula HOM05D003531 ORTHO05D004354 3.8e-62 243.8 649 31.3
AT3G52100 Arabidopsis thaliana HOM05D003531 ORTHO05D004354 1.8e-59 235.0 637 30.8
A03p48680 Brassica napus HOM05D003531 ORTHO05D004354 1.2e-58 232.3 653 30.8
BcaC06g33381 Brassica carinata HOM05D003531 ORTHO05D004354 2.7e-55 221.1 655 29.6
C07p46790 Brassica napus HOM05D003531 ORTHO05D004354 2.7e-55 221.1 655 29.6
BolC7t45196H Brassica oleracea HOM05D003531 ORTHO05D004354 2.7e-55 221.1 655 29.6
Solyc01g087400.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 2.7e-55 221.1 566 32.9
Lsat_1_v5_gn_1_106281 Lactuca sativa HOM05D003531 ORTHO05D004354 1.0e-54 219.2 661 28.7
BraA03t13971Z Brassica rapa HOM05D003531 ORTHO05D004354 1.5e-53 215.3 639 29.4
Mapoly0014s0141 Marchantia polymorpha HOM05D003531 ORTHO05D004354 3.6e-52 210.7 718 29.7
unitig_699.g19826 Utricularia gibba HOM05D003531 ORTHO05D004354 1.5e-50 205.3 613 30.5
Pp3c8_14490 Physcomitrium patens HOM05D003531 ORTHO05D004354 8.3e-49 199.5 705 28.1
RcHm_v2.0_Chr6g0268071 Rosa chinensis HOM05D003531 ORTHO05D004354 1.1e-45 189.1 194 57.2
BcaC06g33024 Brassica carinata HOM05D003531 ORTHO05D004354 4.0e-43 180.6 152 56.6
CAN.G219.38 Capsicum annuum HOM05D003531 ORTHO05D004354 1.2e-42 179.1 266 41.4
AagrBONN_evm.TU.Sc2ySwM_344.3832 Anthoceros agrestis HOM05D003531 ORTHO05D004354 3.9e-38 164.1 167 49.1
SMO203G0227 Selaginella moellendorffii HOM05D003531 ORTHO05D004354 1.1e-37 162.5 268 36.9
PGSC0003DMG400006794 Solanum tuberosum HOM05D003531 ORTHO05D004354 1.9e-37 161.8 151 53.6
TAR369G0698 Trochodendron aralioides HOM05D003531 ORTHO05D004354 8.1e-36 156.4 98 76.5
Oeu048992.1 Olea europaea HOM05D003531 ORTHO05D004354 2.7e-31 141.4 241 39.4
Migut.N01607 Erythranthe guttata HOM05D003531 ORTHO05D004354 6.6e-30 136.7 264 36.7
BcaB01g00446 Brassica carinata HOM05D003531 ORTHO05D004354 9.6e-29 132.9 167 48.5
Solyc01g087370.2 Solanum lycopersicum HOM05D003531 ORTHO05D030633 4.0e-27 127.5 100 61.0
GSVIVG01032130001 Vitis vinifera HOM05D003531 ORTHO05D004354 1.3e-25 122.5 76 77.6
SHI04073 Sapria himalayana HOM05D003531 ORTHO05D004354 2.7e-23 114.8 626 27.8
Solyc01g087410.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.3e-22 112.5 54 83.3
Solyc01g087330.4 Solanum lycopersicum HOM05D003531 ORTHO05D004354 1.9e-16 92.0 42 92.9
Solyc01g087360.3 Solanum lycopersicum HOM05D003531 ORTHO05D004354 3.2e-16 91.3 83 49.4
MBI02_g23151_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 1.0e-14 86.3 75 66.7
Rhsim12G0088200 Rhododendron simsii HOM05D003531 ORTHO05D004354 4.8e-12 77.4 256 30.9
CAN.G205.12 Capsicum annuum HOM05D003531 ORTHO05D004354 9.0e-11 73.2 36 86.1
MBI02_g23150_MAGBIO Magnolia biondii HOM05D003531 ORTHO05D004354 2.6e-10 71.6 182 31.9
BcaB02g08589 Brassica carinata HOM05D003531 ORTHO05D004354 1.4e-08 65.9 57 52.6
QL04p008146 Quercus lobata HOM05D003531 ORTHO05D004354 1.2e-07 62.8 25 100.0
BcaC06g33023 Brassica carinata HOM05D003531 ORTHO05D004354 4.6e-07 60.8 25 96.0
MCO07G206 Micromonas commoda HOM05D000590 ORTHO05D005739 2.3e-06 58.5 61 45.9
PSO170G3591 Papaver somniferum HOM05D000590 ORTHO05D001713 5.1e-06 57.4 100 34.0
MD01G1220300 Malus domestica HOM05D000590 ORTHO05D001713 6.7e-06 57.0 50 44.0
Medtr7g117355 Medicago truncatula HOM05D000590 ORTHO05D001713 8.7e-06 56.6 122 30.3


User provided reference genes

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