Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 1.3e-143 513.1 258 100.0
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.4e-123 443.7 259 83.4
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 1.5e-115 419.9 258 79.1
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 3.6e-114 415.2 259 78.8
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 4.7e-114 414.8 259 79.2
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 6.1e-114 414.5 246 82.5
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 4.4e-112 408.3 259 78.4
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 9.8e-112 407.1 259 80.3
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 2.2e-111 406.0 259 80.3
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 2.9e-111 405.6 260 79.2
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 2.4e-110 402.5 249 80.7
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 4.1e-110 401.7 247 79.8
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 4.1e-110 401.7 272 74.6
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 5.4e-110 401.4 259 79.2
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 5.4e-110 401.4 259 78.0
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.2e-109 400.2 247 79.8
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 2.0e-109 399.4 260 78.8
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 2.7e-109 399.1 227 84.6
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 5.9e-109 397.9 262 78.2
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 1.0e-108 397.1 250 79.2
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 1.3e-108 396.7 252 79.8
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.3e-108 396.0 249 78.3
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 3.9e-108 395.2 265 77.0
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 8.6e-108 394.0 258 78.3
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 8.6e-108 394.0 256 78.5
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 1.9e-107 392.9 251 78.5
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.9e-107 392.9 232 81.9
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 2.5e-107 392.5 250 77.2
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.5e-107 392.5 258 76.7
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 2.5e-107 392.5 260 75.0
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 9.5e-107 390.6 258 77.1
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.2e-106 390.2 225 85.8
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 1.6e-106 389.8 259 75.7
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 2.1e-106 389.4 259 76.1
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 3.6e-106 388.7 285 72.3
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 3.6e-106 388.7 257 76.3
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 4.7e-106 388.3 227 81.1
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 4.7e-106 388.3 247 75.7
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 6.2e-106 387.9 252 77.0
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 8.0e-106 387.5 249 77.5
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 1.4e-105 386.7 258 77.1
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.8e-105 386.3 232 82.3
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 1.8e-105 386.3 254 74.8
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 2.3e-105 386.0 256 76.6
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 2.3e-105 386.0 239 79.1
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 5.2e-105 384.8 254 76.4
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 1.2e-104 383.6 255 77.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.5e-104 383.3 259 75.7
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 3.4e-104 382.1 243 79.4
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 3.4e-104 382.1 263 76.0
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.3e-103 380.2 252 75.4
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 2.9e-103 379.0 257 75.9
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 3.7e-103 378.6 230 80.0
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 6.4e-103 377.9 259 74.1
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 8.3e-103 377.5 249 75.5
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 1.1e-102 377.1 245 75.1
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.4e-102 376.7 256 74.2
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 1.4e-102 376.7 230 80.4
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 2.4e-102 375.9 234 77.8
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 7.0e-102 374.4 251 75.7
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 9.2e-102 374.0 256 72.7
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 3.5e-101 372.1 256 73.4
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 4.6e-101 371.7 262 74.0
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 7.8e-101 370.9 256 71.9
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 5.6e-99 364.8 261 72.0
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 9.5e-99 364.0 259 72.2
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.1e-98 362.8 258 70.9
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 2.8e-98 362.5 254 72.8
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 6.8e-97 357.8 251 71.3
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.3e-95 353.6 254 72.0
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.7e-95 353.2 258 69.4
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 5.4e-94 348.2 252 70.6
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.2e-93 347.1 249 70.3
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 2.1e-93 346.3 237 71.3
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 2.7e-93 345.9 250 70.0
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 7.8e-93 344.4 254 67.7
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 1.0e-92 344.0 264 70.1
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 1.3e-92 343.6 258 68.2
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.1e-91 340.5 252 68.7
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 3.3e-91 339.0 250 70.4
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.6e-90 336.7 252 68.3
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 8.9e-89 330.9 219 75.3
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 4.4e-88 328.6 259 65.6
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 5.8e-88 328.2 209 78.9
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.3e-87 327.0 197 82.7
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 5.4e-86 321.6 253 65.6
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 9.2e-86 320.9 252 66.3
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.6e-85 320.1 252 66.3
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 6.0e-85 318.2 245 65.7
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 6.0e-85 318.2 252 65.5
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 1.0e-84 317.4 252 67.9
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 5.1e-84 315.1 241 67.2
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 6.6e-84 314.7 252 66.3
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 8.6e-84 314.3 253 65.2
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 2.8e-82 309.3 241 66.0
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 2.8e-82 309.3 241 66.0
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 1.1e-81 307.4 241 66.0
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 4.4e-80 302.0 251 63.7
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 1.6e-77 293.5 167 84.4
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.0e-76 290.8 278 57.2
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 2.1e-74 283.1 167 82.0
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.1e-73 280.8 171 82.5
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.1e-73 280.8 185 74.1
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 1.2e-69 267.3 168 78.0
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.6e-69 266.9 171 78.9
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.7e-69 266.2 174 75.9
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.9e-68 262.3 173 75.7
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 9.0e-65 251.1 245 56.3
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 1.2e-64 250.8 185 65.4
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 2.0e-64 250.0 175 75.4
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 2.3e-60 236.5 250 54.0
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 6.9e-57 224.9 189 60.3
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 1.4e-41 174.1 250 43.2
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 3.2e-38 162.9 103 76.7
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 3.9e-36 156.0 215 45.1
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 2.0e-35 153.7 88 79.5
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 2.0e-35 153.7 93 81.7
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.5e-32 144.1 184 49.5
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 1.1e-30 137.9 80 80.0
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 2.2e-26 123.6 146 53.4
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 6.3e-26 122.1 66 84.8
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 3.5e-24 116.3 91 67.0
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 1.5e-22 110.9 85 62.4
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 7.2e-22 108.6 59 88.1
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.0e-19 100.5 195 38.5
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 7.5e-19 98.6 91 54.9
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 8.2e-18 95.1 60 75.0
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 1.2e-16 91.3 63 69.8
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 2.7e-16 90.1 130 37.7
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 7.7e-16 88.6 58 70.7
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 3.2e-14 83.2 261 33.0
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 1.4e-09 67.8 64 53.1
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 1.2e-08 64.7 52 61.5
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 1.6e-08 64.3 60 60.0
GSVIVG01016925001 Vitis vinifera HOM05D000106 ORTHO05D000160 5.9e-08 62.4 52 59.6
Cfa023417 Carpinus fangiana HOM05D005962 ORTHO05D123568 1.1e-06 58.2 196 27.6


User provided reference genes

Program Settings