Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 6.8e-204 713.8 357 100.0
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 4.5e-131 471.9 371 66.8
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.7e-130 469.9 371 66.6
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 6.5e-130 468.0 350 71.4
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 2.1e-128 463.0 323 76.2
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 3.6e-128 462.2 334 71.9
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 3.6e-128 462.2 350 69.4
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 2.3e-127 459.5 365 69.3
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 3.0e-127 459.1 350 69.1
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 1.1e-126 457.2 374 65.8
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.5e-126 456.8 352 70.5
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 3.3e-126 455.7 369 66.9
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 5.7e-126 454.9 362 67.1
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 9.7e-126 454.1 317 72.6
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.8e-124 449.9 354 68.1
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 1.8e-124 449.9 316 73.7
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 3.1e-124 449.1 326 69.9
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 2.6e-123 446.0 360 67.2
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 5.9e-123 444.9 357 68.1
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 1.0e-122 444.1 348 67.0
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.7e-122 443.4 344 68.0
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 2.2e-122 443.0 319 69.6
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 2.9e-122 442.6 363 66.1
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.9e-122 442.6 336 69.0
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 2.9e-122 442.6 351 67.2
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 3.8e-122 442.2 368 67.1
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 4.2e-121 438.7 335 70.4
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 4.2e-121 438.7 326 70.9
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 9.4e-121 437.6 308 71.4
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.7e-120 436.0 308 72.7
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 2.7e-120 436.0 332 68.7
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 4.6e-120 435.3 307 73.0
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 1.4e-119 433.7 361 67.3
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 1.4e-119 433.7 344 68.3
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 3.0e-119 432.6 338 67.8
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 3.0e-119 432.6 289 76.5
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 6.7e-119 431.4 301 73.4
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 6.7e-119 431.4 368 65.8
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 6.7e-119 431.4 286 75.9
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 2.0e-118 429.9 350 65.1
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 2.6e-118 429.5 349 64.5
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 3.3e-118 429.1 289 76.1
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 4.8e-117 425.2 318 69.2
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 8.2e-117 424.5 280 75.7
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 1.1e-116 424.1 303 71.6
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.8e-116 423.3 261 80.1
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 5.3e-116 421.8 321 66.4
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 5.3e-116 421.8 352 65.3
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 5.3e-116 421.8 294 70.7
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.2e-115 420.6 260 79.6
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 4.5e-115 418.7 285 74.4
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 5.9e-115 418.3 300 72.7
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 3.8e-114 415.6 278 75.9
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 3.8e-114 415.6 245 80.8
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.9e-113 413.3 263 77.9
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.5e-113 412.9 288 72.9
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 2.7e-112 409.5 285 71.6
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.0e-111 407.5 344 64.2
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.8e-111 406.8 286 73.1
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 5.2e-111 405.2 293 67.9
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 2.6e-110 402.9 271 74.9
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 4.4e-110 402.1 347 64.3
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 1.7e-109 400.2 289 68.5
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 1.7e-109 400.2 285 69.8
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 2.8e-109 399.4 285 71.2
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 3.7e-109 399.1 285 69.8
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 4.8e-109 398.7 336 61.9
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 6.3e-109 398.3 313 63.9
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 1.1e-108 397.5 315 67.3
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.4e-108 397.1 284 73.2
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.8e-108 396.7 284 73.6
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 3.1e-108 396.0 314 63.4
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 9.1e-108 394.4 322 62.7
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 9.1e-108 394.4 314 63.4
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 2.0e-107 393.3 352 61.4
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 2.6e-107 392.9 333 62.2
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.6e-107 392.9 451 51.7
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 7.7e-107 391.3 326 61.3
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 5.0e-106 388.7 328 66.5
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.9e-105 386.7 331 61.0
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.2e-104 384.0 337 63.5
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 2.1e-104 383.3 271 72.0
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 2.7e-104 382.9 292 66.8
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.5e-102 377.1 281 65.1
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 3.3e-102 375.9 332 60.5
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.8e-101 372.9 210 86.2
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.9e-99 365.2 280 66.8
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 1.2e-91 340.9 355 57.2
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 2.2e-90 336.7 279 60.2
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 2.4e-84 316.6 264 62.5
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.2e-80 304.3 228 68.0
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.0e-79 301.2 261 63.6
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 4.0e-79 299.3 242 59.5
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 2.0e-78 297.0 331 54.4
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.8e-76 290.4 258 61.6
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 7.0e-76 288.5 258 61.2
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 7.0e-76 288.5 249 56.6
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 2.3e-74 283.5 238 55.5
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 6.6e-74 282.0 348 50.6
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.9e-73 280.4 242 53.3
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 6.2e-64 248.8 200 65.0
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 6.2e-64 248.8 238 49.6
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 2.2e-61 240.4 240 47.9
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.6e-58 228.8 186 62.9
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.1e-52 211.5 114 84.2
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 1.7e-50 204.1 180 61.7
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.8e-47 194.1 289 35.3
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 7.6e-46 188.7 205 44.4
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 6.4e-45 185.7 153 53.6
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 1.1e-44 184.9 120 75.8
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.1e-39 168.3 219 40.2
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 3.5e-35 153.3 213 45.1
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 6.7e-34 149.1 191 48.7
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 6.2e-32 142.5 137 59.9
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 9.0e-31 138.7 147 55.8
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.8e-26 124.4 75 82.7
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 5.6e-25 119.4 102 62.7
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 5.3e-23 112.8 125 56.0
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 3.3e-17 93.6 66 74.2
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 5.7e-17 92.8 197 31.5
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 6.5e-13 79.3 105 43.8
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.5e-09 67.4 142 31.7
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 3.3e-09 67.0 143 29.4
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 5.7e-09 66.2 142 31.7
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 9.7e-09 65.5 141 31.2
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 9.7e-09 65.5 142 31.7
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 2.8e-08 63.9 161 29.8
Lj4g0002890 Lotus japonicus HOM05D006695 ORTHO05D008239 2.8e-08 63.9 157 33.8
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 2.8e-08 63.9 141 33.3
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 2.8e-08 63.9 146 32.2
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 3.7e-08 63.5 199 25.6
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 3.7e-08 63.5 142 28.9
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 3.7e-08 63.5 142 31.0
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 4.8e-08 63.2 198 26.3
MSTRG.24766 Avicennia marina HOM05D006695 ORTHO05D008239 6.3e-08 62.8 211 28.4
CiPaw.07G045700 Carya illinoinensis HOM05D007191 ORTHO05D009370 8.2e-08 62.4 195 29.2
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 8.2e-08 62.4 142 31.0
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 8.2e-08 62.4 142 31.0
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 1.1e-07 62.0 199 25.1
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 1.1e-07 62.0 199 25.1
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.1e-07 62.0 199 25.1
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.8e-07 61.2 141 31.9
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 1.8e-07 61.2 142 31.0
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 2.4e-07 60.8 199 25.6
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 3.1e-07 60.5 142 31.7
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 3.1e-07 60.5 199 24.1
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 3.1e-07 60.5 153 32.0
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 3.1e-07 60.5 142 27.5
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 4.1e-07 60.1 196 25.0
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 1.2e-06 58.5 194 24.2
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 1.2e-06 58.5 194 24.2
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.5e-06 58.2 196 24.0
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 1.5e-06 58.2 196 24.5
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 1.5e-06 58.2 218 23.9
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.5e-06 58.2 147 25.2
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 2.0e-06 57.8 155 31.0
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 2.0e-06 57.8 166 27.1
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 2.0e-06 57.8 155 28.4
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 3.4e-06 57.0 142 30.3
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 5.9e-06 56.2 172 24.4
QL06p036361 Quercus lobata HOM05D007191 ORTHO05D009370 7.7e-06 55.8 195 28.2


User provided reference genes

Program Settings