Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0014639 Lotus japonicus HOM05D002009 ORTHO05D030873 2.3e-93 345.5 172 100.0
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 2.3e-32 142.9 78 96.2
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 3.3e-31 139.0 78 93.6
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 3.3e-31 139.0 78 93.6
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 4.3e-31 138.7 78 93.6
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 7.4e-31 137.9 78 92.3
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 9.7e-31 137.5 78 92.3
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 1.3e-30 137.1 78 91.0
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 1.3e-30 137.1 78 92.3
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 1.3e-30 137.1 78 92.3
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 2.2e-30 136.3 78 92.3
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 2.8e-30 136.0 82 86.6
FAN28G0184 Fragaria x ananassa HOM05D002009 ORTHO05D005728 2.8e-30 136.0 78 87.2
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 3.7e-30 135.6 78 92.3
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 3.7e-30 135.6 78 89.7
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 3.7e-30 135.6 78 89.7
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 3.7e-30 135.6 78 91.0
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 4.8e-30 135.2 78 91.0
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 4.8e-30 135.2 78 91.0
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 4.8e-30 135.2 78 89.7
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 4.8e-30 135.2 78 91.0
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 6.3e-30 134.8 78 89.7
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 6.3e-30 134.8 78 91.0
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 6.3e-30 134.8 78 91.0
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 6.3e-30 134.8 78 91.0
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 6.3e-30 134.8 78 88.5
arahy.Tifrunner.gnm1.ann1.9F49MR Arachis hypogaea HOM05D002009 ORTHO05D004937 8.2e-30 134.4 77 92.2
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 8.2e-30 134.4 78 89.7
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 8.2e-30 134.4 78 88.5
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 8.2e-30 134.4 78 88.5
FvH4_1g24660 Fragaria vesca HOM05D002009 ORTHO05D005728 1.1e-29 134.0 78 87.2
FAN23G2639 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.1e-29 134.0 78 87.2
FAN26G3211 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.1e-29 134.0 78 87.2
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 1.1e-29 134.0 78 89.7
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 1.4e-29 133.7 78 87.2
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 1.4e-29 133.7 78 87.2
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 1.4e-29 133.7 78 88.5
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 1.8e-29 133.3 78 87.2
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 1.8e-29 133.3 78 89.7
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 2.4e-29 132.9 78 87.2
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 2.4e-29 132.9 78 89.7
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 2.4e-29 132.9 78 89.7
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 2.4e-29 132.9 78 89.7
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 2.4e-29 132.9 78 87.2
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 3.1e-29 132.5 78 87.2
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 3.1e-29 132.5 78 89.7
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 3.1e-29 132.5 78 88.5
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 4.1e-29 132.1 78 88.5
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 4.1e-29 132.1 78 88.5
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 4.1e-29 132.1 78 87.2
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 4.1e-29 132.1 78 85.9
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 4.1e-29 132.1 78 87.2
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 9.0e-29 131.0 78 89.7
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 9.0e-29 131.0 78 87.2
SGA_v2.0_scaffold273G46462 Striga asiatica HOM05D002009 ORTHO05D005728 9.0e-29 131.0 82 81.7
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 1.2e-28 130.6 78 88.5
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 1.2e-28 130.6 78 85.9
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 1.5e-28 130.2 78 84.6
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 1.5e-28 130.2 78 85.9
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 2.6e-28 129.4 78 85.9
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 2.6e-28 129.4 78 85.9
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 2.6e-28 129.4 78 85.9
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 2.6e-28 129.4 78 87.2
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 3.4e-28 129.0 78 84.6
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 4.5e-28 128.6 78 85.9
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 7.6e-28 127.9 78 85.9
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 7.6e-28 127.9 81 81.5
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 1.0e-27 127.5 78 84.6
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 1.3e-27 127.1 78 84.6
Hund07251 Selenicereus undatus HOM05D002009 ORTHO05D005728 1.3e-27 127.1 78 84.6
AUR62000499 Chenopodium quinoa HOM05D002009 ORTHO05D005728 2.2e-27 126.3 78 84.6
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 2.2e-27 126.3 78 84.6
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 2.9e-27 125.9 78 83.3
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 5.0e-27 125.2 78 83.3
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 5.0e-27 125.2 78 82.1
Lj6g0003801 Lotus japonicus HOM05D002009 ORTHO05D005728 5.0e-27 125.2 78 85.9
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 5.0e-27 125.2 78 84.6
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 6.5e-27 124.8 78 78.2
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 8.5e-27 124.4 78 80.8
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 8.5e-27 124.4 78 80.8
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 2.5e-26 122.9 78 79.5
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 4.2e-26 122.1 78 79.5
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 5.5e-26 121.7 78 80.8
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.2e-25 120.6 78 76.9
Sp2g27020 Schrenkiella parvula HOM05D002009 ORTHO05D005728 2.1e-25 119.8 78 76.9
AagrBONN_evm.TU.Sc2ySwM_344.4377 Anthoceros agrestis HOM05D002009 ORTHO05D005728 2.7e-25 119.4 78 76.9
Thhalv10003565m.g Eutrema salsugineum HOM05D002009 ORTHO05D005728 2.7e-25 119.4 78 76.9
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 2.7e-25 119.4 124 60.5
Aa31LG3G3040 Aethionema arabicum HOM05D002009 ORTHO05D005728 3.6e-25 119.0 78 76.9
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 3.6e-25 119.0 86 76.7
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 4.6e-25 118.6 78 75.6
CBR_g38906 Chara braunii HOM05D002009 ORTHO05D005728 6.1e-25 118.2 77 77.9
BraA06t26010Z Brassica rapa HOM05D002009 ORTHO05D005728 1.0e-24 117.5 81 72.8
AL8G41220 Arabidopsis lyrata HOM05D002009 ORTHO05D005728 1.3e-24 117.1 78 74.4
AT5G63960 Arabidopsis thaliana HOM05D002009 ORTHO05D005728 1.3e-24 117.1 78 74.4
Carub.0008s2474 Capsella rubella HOM05D002009 ORTHO05D005728 1.8e-24 116.7 78 74.4
CARHR277870 Cardamine hirsuta HOM05D002009 ORTHO05D005728 3.0e-24 115.9 78 73.1
A06p30580 Brassica napus HOM05D002009 ORTHO05D005728 3.9e-24 115.5 78 73.1
C03p62380 Brassica napus HOM05D002009 ORTHO05D005728 3.9e-24 115.5 78 73.1
BolC3t18498H Brassica oleracea HOM05D002009 ORTHO05D005728 3.9e-24 115.5 78 73.1
PRCOL_00002177 Prasinoderma coloniale HOM05D002009 ORTHO05D005728 3.7e-22 109.0 77 66.2
MCO05G447 Micromonas commoda HOM05D002009 ORTHO05D005728 7.7e-20 101.3 77 64.9
DCAR_001197 Daucus carota HOM05D002009 ORTHO05D005728 8.5e-19 97.8 75 60.0
FAN19G2450 Fragaria x ananassa HOM05D002009 ORTHO05D005728 9.4e-18 94.4 54 85.2
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.6e-17 93.6 56 83.9
Cre01.g015250 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 3.6e-17 92.4 79 60.8
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 4.7e-17 92.0 53 86.8
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 2.8e-14 82.8 77 53.2
MD07G1029900 Malus domestica HOM05D002009 ORTHO05D005728 2.4e-13 79.7 44 93.2
AT1G49180 Arabidopsis thaliana HOM05D000055 ORTHO05D001675 9.1e-13 77.8 117 46.2
Peaxi162Scf00153g00816 Petunia axillaris HOM05D002009 ORTHO05D005728 9.1e-13 77.8 53 77.4
Actinidia20062 Actinidia chinensis HOM05D002009 ORTHO05D030873 2.6e-12 76.3 79 55.7
Aqoxy2G03871 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 2.9e-11 72.8 54 64.8
Lj5g0021253 Lotus japonicus HOM05D000780 ORTHO05D008187 1.9e-10 70.1 40 85.0
Cpa.g.sc42.182 Carica papaya HOM05D002009 ORTHO05D005728 9.4e-10 67.8 56 69.6
VMungo0720G3181 Vigna mungo HOM05D000780 ORTHO05D008187 2.0e-07 60.1 40 72.5
Phvul.L001832 Phaseolus vulgaris HOM05D000780 ORTHO05D008187 7.4e-07 58.2 40 70.0
Lj7C299G6 Lonicera japonica HOM05D001824 ORTHO05D003650 3.7e-06 55.8 37 67.6
CiPaw.07G077300 Carya illinoinensis HOM05D000780 ORTHO05D008187 4.8e-06 55.5 50 58.0
Psat0s1g0040 Pisum sativum HOM05D001824 ORTHO05D003650 4.8e-06 55.5 38 68.4
Medtr1g079767 Medicago truncatula HOM05D000780 ORTHO05D008187 6.3e-06 55.1 40 65.0
arahy.Tifrunner.gnm1.ann1.22BZB2 Arachis hypogaea HOM05D000780 ORTHO05D008187 8.2e-06 54.7 34 76.5
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 8.2e-06 54.7 35 74.3


User provided reference genes

Program Settings