Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 2640.1 1323 100.0
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 2241.1 1329 84.6
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 2211.8 1329 83.1
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 2189.5 1329 82.7
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 2158.3 1327 80.7
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 2144.8 1327 80.9
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 2144.4 1278 83.9
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 2098.2 1328 78.8
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 2085.5 1327 78.1
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1821.6 1323 68.3
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1820.8 1135 80.4
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1820.8 1322 68.8
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1813.9 1326 68.3
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1794.6 1321 67.3
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1793.5 1321 66.9
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1792.7 1326 67.9
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1780.4 1326 67.0
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1771.1 1329 67.5
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1766.1 1327 67.5
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1764.2 1326 67.5
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1763.8 1326 67.5
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1763.4 1326 67.5
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1761.5 1325 67.7
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1761.1 1326 67.3
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1755.7 1323 67.4
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1754.6 1324 67.3
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1754.2 1326 67.2
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1754.2 1327 67.1
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1754.2 1324 66.7
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1744.9 1321 66.5
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1741.5 1328 66.0
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1737.6 1325 66.6
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1721.4 1244 70.0
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1720.3 1323 65.4
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1708.7 1326 64.4
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1707.2 1321 65.0
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1707.2 1321 64.3
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1699.1 1319 64.9
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1696.4 1328 64.5
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1681.4 1244 68.3
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1680.2 1243 68.7
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1674.8 1323 63.7
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1669.4 1318 63.6
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1664.4 1321 62.9
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1661.7 1322 62.9
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1656.3 1323 62.7
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1654.0 1331 62.4
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1645.9 1323 62.6
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1642.9 1322 62.2
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1638.6 1274 63.7
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1637.9 1320 62.7
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1636.3 1351 61.4
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1635.2 1326 62.7
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1625.9 1325 62.6
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1624.0 1326 61.8
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1619.8 1324 60.4
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1613.2 1328 61.7
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1613.2 1326 62.1
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1612.8 1336 61.2
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1603.6 1342 61.6
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1598.9 1338 61.1
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1590.9 1322 61.8
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1587.4 1241 63.7
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1584.7 1343 61.4
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1573.1 1264 62.2
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1567.7 1321 61.1
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1552.7 1324 59.6
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1550.4 1098 70.0
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1548.5 1093 71.3
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1533.1 1327 58.8
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1531.9 1325 58.9
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1530.8 1325 59.1
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1529.2 1327 58.7
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1526.9 1326 59.2
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1526.5 1329 59.1
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1526.5 1327 58.9
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1525.0 1328 58.7
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1519.6 1329 58.6
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1516.9 1324 59.1
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1508.8 1193 63.5
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1498.8 1353 56.8
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1487.2 1324 57.1
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1469.5 1321 57.8
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1465.3 1323 57.4
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1461.8 1281 60.4
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1436.8 1324 55.8
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1429.8 1105 64.7
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1426.0 1090 65.5
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1401.3 1339 53.8
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1377.1 1349 53.4
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1363.6 1560 48.5
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1363.2 1145 61.0
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1316.2 1345 50.9
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1316.2 1328 52.5
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1310.8 1321 54.4
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1257.7 947 66.1
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1169.8 1328 49.8
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1168.7 901 63.0
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1120.1 863 66.0
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1117.1 1254 47.4
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 7.1e-299 1031.2 755 68.7
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 1.0e-257 894.4 1375 39.2
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 6.3e-231 805.4 1197 39.6
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 8.3e-231 805.1 1323 38.0
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 7.7e-229 798.5 852 48.4
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 5.6e-227 792.3 1156 40.9
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 1.3e-207 728.0 804 49.3
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 4.6e-165 586.6 376 76.6
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 4.1e-153 547.0 1516 29.3
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 3.0e-132 477.6 356 68.5
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 4.8e-130 470.3 459 54.5
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 2.1e-117 428.3 629 42.9
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 7.8e-88 330.1 1363 26.9
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 1.5e-78 299.3 254 61.0
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 3.3e-78 298.1 208 69.7
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 5.6e-78 297.4 1542 25.0
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 9.6e-78 296.6 255 55.3
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.8e-77 295.0 230 64.3
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 6.9e-68 263.8 1284 25.5
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.1e-65 256.5 143 96.5
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.2e-65 254.6 196 70.4
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 5.6e-54 217.6 167 71.3
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 5.8e-51 207.6 167 67.7
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 2.2e-50 205.7 133 80.5
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 6.7e-47 194.1 1354 24.3
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 4.5e-27 128.3 136 52.2


User provided reference genes

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