Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 2.9e-137 491.9 250 100.0
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 1.9e-91 339.7 223 81.2
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 2.0e-85 319.7 190 86.8
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 2.2e-84 316.2 190 84.2
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 3.8e-84 315.5 223 75.8
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 1.9e-83 313.2 223 74.9
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 2.4e-83 312.8 190 84.7
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 3.2e-83 312.4 223 74.9
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 2.7e-82 309.3 223 72.2
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 1.0e-81 307.4 223 71.7
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 3.6e-79 298.9 201 76.1
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 6.9e-78 294.7 224 68.8
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 2.6e-77 292.7 224 69.2
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 5.8e-77 291.6 201 74.6
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 7.1e-67 258.1 202 66.3
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 1.2e-66 257.3 202 64.9
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 2.7e-66 256.1 202 64.4
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 2.7e-66 256.1 202 65.8
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 4.6e-66 255.4 202 66.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 4.6e-66 255.4 202 64.9
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.6e-66 255.4 202 64.9
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 6.0e-66 255.0 202 62.9
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.0e-65 252.7 202 64.4
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 1.1e-64 250.8 202 63.9
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 1.1e-64 250.8 202 64.9
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.1e-64 250.8 202 64.4
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 2.5e-64 249.6 202 64.4
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 2.1e-63 246.5 202 61.9
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 3.7e-63 245.7 191 64.4
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 3.7e-63 245.7 203 63.5
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 4.8e-63 245.4 202 63.9
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 1.4e-62 243.8 202 63.4
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 1.4e-62 243.8 202 60.9
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.8e-62 243.4 202 60.9
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 5.3e-62 241.9 202 61.9
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 9.0e-62 241.1 202 60.9
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 2.0e-61 240.0 201 62.2
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 2.6e-61 239.6 202 60.9
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 2.6e-61 239.6 202 61.9
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 5.8e-61 238.4 211 58.8
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 1.3e-60 237.3 190 62.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 1.7e-60 236.9 202 60.4
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 2.9e-60 236.1 202 59.9
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 3.8e-60 235.7 202 59.9
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 4.9e-60 235.3 202 61.4
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 4.9e-60 235.3 202 61.4
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 1.4e-59 233.8 190 62.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.9e-59 233.4 202 60.4
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 7.1e-59 231.5 201 62.7
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 9.3e-59 231.1 202 61.4
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 9.3e-59 231.1 191 61.3
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 1.2e-58 230.7 202 57.9
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 2.7e-58 229.6 202 57.4
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 2.7e-58 229.6 191 60.7
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 3.5e-58 229.2 211 55.9
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 4.6e-58 228.8 202 59.9
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 6.0e-58 228.4 202 58.9
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 7.9e-58 228.0 201 60.2
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 1.8e-57 226.9 202 59.9
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 3.9e-57 225.7 202 58.4
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 2.5e-56 223.0 190 61.1
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 2.5e-56 223.0 202 56.9
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 9.6e-56 221.1 202 56.9
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 1.6e-55 220.3 202 56.4
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 1.6e-55 220.3 233 51.1
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 2.1e-55 219.9 202 58.4
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 2.8e-55 219.5 190 57.4
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 2.8e-55 219.5 202 56.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 2.8e-55 219.5 190 57.9
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 3.7e-55 219.2 191 60.2
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 3.7e-55 219.2 202 56.9
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 4.8e-55 218.8 198 59.1
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 6.3e-55 218.4 202 55.9
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 6.3e-55 218.4 202 56.4
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 1.1e-54 217.6 190 57.9
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 1.1e-54 217.6 191 56.5
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.1e-54 217.6 182 60.4
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 1.4e-54 217.2 203 56.7
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 1.4e-54 217.2 190 55.8
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 1.8e-54 216.9 202 55.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 2.4e-54 216.5 190 56.3
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 2.4e-54 216.5 190 56.3
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 3.1e-54 216.1 190 57.9
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 3.1e-54 216.1 191 58.1
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 4.1e-54 215.7 190 55.8
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 5.3e-54 215.3 190 56.3
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 6.9e-54 214.9 190 56.3
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 6.9e-54 214.9 202 56.4
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 1.2e-53 214.2 190 55.8
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 1.5e-53 213.8 202 54.5
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 2.0e-53 213.4 190 55.8
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 3.4e-53 212.6 202 55.9
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 4.5e-53 212.2 190 55.8
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 4.5e-53 212.2 202 55.4
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 5.9e-53 211.8 190 55.3
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 5.9e-53 211.8 202 55.4
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 1.0e-52 211.1 190 55.3
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 1.0e-52 211.1 203 55.2
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 4.2e-51 205.7 190 57.9
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 2.3e-49 199.9 190 52.6
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 9.7e-48 194.5 189 52.9
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 1.3e-47 194.1 191 53.4
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 8.2e-47 191.4 201 48.8
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.8e-46 190.3 140 69.3
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 4.5e-45 185.7 157 58.6
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 5.5e-43 178.7 133 63.2
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 4.6e-42 175.6 189 50.3
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 3.6e-34 149.4 191 42.9
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 1.0e-33 147.9 192 44.8
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 8.8e-33 144.8 190 44.2
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 4.1e-30 136.0 190 37.9
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 7.7e-29 131.7 205 37.6
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 3.2e-27 126.3 135 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 6.7e-25 118.6 192 36.5
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.0e-17 94.7 82 61.0
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.4e-17 94.4 79 60.8
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.2e-13 81.3 62 66.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 6.3e-07 58.9 58 51.7


User provided reference genes

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