Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 1.1e-99 366.7 189 100.0
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 1.1e-75 287.0 189 81.0
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 7.0e-75 284.3 194 80.4
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 1.2e-74 283.5 189 80.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 3.5e-74 282.0 191 79.6
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 6.6e-73 277.7 191 79.6
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.6e-73 277.3 191 79.6
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.9e-72 276.2 189 76.7
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.6e-72 274.6 189 77.2
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 2.1e-71 272.7 189 76.2
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 2.8e-71 272.3 189 77.8
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 6.1e-71 271.2 189 76.2
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 1.0e-70 270.4 187 74.3
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.4e-70 270.0 187 76.5
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 6.8e-70 267.7 186 74.2
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.0e-69 266.2 187 73.3
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 4.4e-69 265.0 193 78.8
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 5.8e-69 264.6 187 73.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.3e-68 263.5 187 73.3
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.7e-68 263.1 187 72.7
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.9e-68 262.3 190 74.7
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 4.9e-68 261.5 189 74.1
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.1e-67 260.4 189 75.7
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.4e-67 260.0 191 72.3
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.4e-67 260.0 186 73.7
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.4e-67 260.0 190 75.3
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 7.0e-67 257.7 189 72.5
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 6.0e-66 254.6 185 73.5
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 7.8e-66 254.2 187 70.1
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.0e-65 253.8 189 73.0
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.7e-65 253.1 188 71.8
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 2.3e-65 252.7 187 70.6
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-65 252.7 187 70.6
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-65 252.7 187 70.6
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 3.9e-65 251.9 186 72.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 3.9e-65 251.9 189 70.4
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 5.0e-65 251.5 187 71.1
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 5.0e-65 251.5 187 71.7
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 6.6e-65 251.1 189 70.4
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.1e-64 250.4 189 71.4
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.1e-64 250.4 187 71.7
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.9e-64 249.6 190 73.7
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.5e-64 249.2 188 70.2
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.5e-64 249.2 187 71.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 7.3e-64 247.7 180 73.3
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 7.3e-64 247.7 189 70.4
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 7.3e-64 247.7 189 70.4
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 9.5e-64 247.3 184 71.7
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 9.5e-64 247.3 186 71.5
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.2e-63 246.9 177 72.3
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.6e-63 246.5 186 71.5
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.6e-63 245.4 187 70.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 4.7e-63 245.0 190 70.0
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 4.7e-63 245.0 186 68.8
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 6.2e-63 244.6 187 71.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 8.0e-63 244.2 186 70.4
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.4e-62 243.4 186 69.9
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.8e-62 243.0 189 68.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.8e-62 243.0 190 70.5
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 1.8e-62 243.0 193 69.4
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 2.3e-62 242.7 193 68.4
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 4.0e-62 241.9 191 68.1
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 5.2e-62 241.5 172 74.4
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 5.2e-62 241.5 188 71.8
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 8.9e-62 240.7 190 70.5
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 8.9e-62 240.7 184 71.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.5e-61 240.0 184 69.6
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.0e-61 239.6 184 69.6
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 2.6e-61 239.2 184 69.6
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 3.4e-61 238.8 188 68.1
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 3.4e-61 238.8 189 70.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 3.4e-61 238.8 184 68.5
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 5.8e-61 238.0 184 69.0
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.2e-60 236.1 187 67.9
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 2.2e-60 236.1 191 69.1
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 6.4e-60 234.6 188 69.1
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.1e-59 233.8 192 67.7
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.1e-59 233.8 200 64.5
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 2.4e-59 232.6 156 76.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 5.4e-59 231.5 182 69.2
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.2e-58 230.3 188 69.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.0e-57 225.7 188 64.9
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.0e-57 225.7 188 65.4
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 5.1e-57 224.9 143 79.7
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 6.6e-57 224.6 180 68.9
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 8.6e-57 224.2 215 58.6
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-56 223.8 144 80.6
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-56 223.8 144 80.6
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.1e-56 223.8 144 80.6
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.1e-56 223.8 140 83.6
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.1e-56 223.8 154 76.0
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 1.1e-56 223.8 125 89.6
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.9e-56 223.0 195 64.6
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.3e-56 222.2 143 79.0
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 4.3e-56 221.9 155 77.4
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 4.3e-56 221.9 144 79.9
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 4.3e-56 221.9 215 60.5
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 4.3e-56 221.9 174 70.1
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 4.3e-56 221.9 188 68.6
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 5.6e-56 221.5 170 68.8
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 5.6e-56 221.5 170 68.8
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 5.6e-56 221.5 151 76.8
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 7.3e-56 221.1 143 78.3
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 9.5e-56 220.7 143 78.3
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 9.5e-56 220.7 166 70.5
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-55 219.5 144 79.9
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-55 219.5 144 79.9
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 3.6e-55 218.8 170 68.8
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 4.7e-55 218.4 126 88.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 4.7e-55 218.4 191 63.9
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 8.1e-55 217.6 166 69.9
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.1e-54 217.2 218 58.3
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.4e-54 216.9 190 63.2
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 3.1e-54 215.7 177 66.7
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 3.1e-54 215.7 188 64.9
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 8.9e-54 214.2 134 81.3
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.2e-53 213.8 203 59.1
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 2.6e-53 212.6 125 84.8
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 5.8e-53 211.5 133 80.5
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 8.3e-52 207.6 125 84.0
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.4e-51 206.8 169 68.6
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 3.5e-50 202.2 146 76.0
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.6e-50 201.8 156 66.7
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 7.8e-50 201.1 184 60.9
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.3e-49 200.3 176 65.3
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.7e-49 199.9 141 76.6
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.9e-49 198.7 132 74.2
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 5.1e-49 198.4 180 62.8
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 6.6e-49 198.0 181 61.9
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 3.3e-48 195.7 194 61.3
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 4.3e-48 195.3 146 71.9
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.6e-48 194.9 186 58.1
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-47 193.7 146 70.5
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-47 193.4 146 70.5
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 6.2e-47 191.4 181 59.7
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 8.1e-47 191.0 175 59.4
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.4e-46 190.3 185 60.0
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.4e-46 189.5 186 60.2
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.4e-46 189.5 186 57.0
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.5e-45 186.8 155 64.5
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 5.8e-45 184.9 155 63.9
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 5.8e-45 184.9 147 68.0
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 4.6e-42 175.3 164 59.1
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.7e-41 173.3 190 54.2
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 6.6e-41 171.4 163 59.5
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-40 169.9 181 55.8
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 2.8e-39 166.0 125 66.4
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 4.0e-38 162.2 191 53.9
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 9.0e-38 161.0 196 52.0
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.8e-36 155.6 140 62.1
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 8.4e-36 154.5 124 61.3
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 5.4e-35 151.8 125 60.8
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-32 143.7 140 57.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.6e-32 141.7 105 65.7
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 6.2e-31 138.3 96 74.0
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.4e-30 137.1 162 49.4
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.0e-29 133.3 103 63.1
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 4.5e-29 132.1 79 82.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.4e-28 128.3 111 60.4
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 2.4e-27 126.3 123 59.3
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 7.1e-27 124.8 137 53.3
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.9e-26 121.3 69 88.4
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 8.7e-25 117.9 68 88.2
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.3e-24 115.9 68 86.8
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 5.5e-19 98.6 69 69.6
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.5e-16 90.5 53 79.2
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.9e-16 90.1 56 75.0
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 1.3e-15 87.4 47 89.4
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.8e-15 86.3 124 38.7
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.7e-15 85.9 53 73.6
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.8e-14 83.6 95 51.6
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-13 80.9 109 45.0
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.0e-13 80.1 109 45.0
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 7.9e-10 68.2 96 45.8
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 3.7e-07 59.3 51 60.8
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 1.4e-06 57.4 31 90.3
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 2.4e-06 56.6 48 56.2
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 4.1e-06 55.8 48 56.2
AUR62025768 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.9e-06 55.1 29 86.2


User provided reference genes

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