Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 2.9e-168 595.1 299 100.0
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 9.5e-167 590.1 299 99.0
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 5.8e-132 474.6 301 81.4
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 2.1e-110 402.9 302 72.8
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 4.5e-108 395.2 319 68.3
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 1.0e-99 367.5 260 75.4
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.9e-98 363.2 297 62.3
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 5.5e-98 361.7 297 61.6
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.6e-97 360.1 301 64.5
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 1.8e-96 356.7 298 61.7
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 3.0e-96 355.9 313 63.9
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 6.7e-96 354.8 293 62.8
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.6e-94 350.1 302 60.9
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 2.0e-92 343.2 312 59.0
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.0e-91 340.9 305 59.7
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.8e-91 339.0 296 60.1
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 6.5e-91 338.2 303 59.1
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 6.5e-91 338.2 304 59.2
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.1e-90 337.4 303 59.1
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.1e-90 337.4 299 59.2
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.9e-90 336.7 295 57.6
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.9e-90 336.7 297 59.9
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 2.5e-90 336.3 300 61.0
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.6e-89 333.6 304 55.3
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 3.6e-89 332.4 293 59.7
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.8e-88 330.1 295 59.3
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 5.1e-88 328.6 231 68.4
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.9e-87 326.6 316 58.9
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 2.5e-87 326.2 304 55.9
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 3.3e-87 325.9 309 55.7
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 4.3e-87 325.5 304 57.9
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 8.2e-86 321.2 295 58.0
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.4e-85 319.7 312 55.8
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 6.9e-85 318.2 299 55.9
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 1.5e-84 317.0 297 57.2
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 1.5e-84 317.0 307 54.7
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 3.4e-84 315.8 304 55.3
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 5.9e-84 315.1 272 65.4
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 5.9e-84 315.1 309 54.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 1.7e-83 313.5 307 54.1
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.7e-83 313.5 309 54.7
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.4e-82 310.5 301 56.5
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.9e-82 310.1 298 56.7
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 3.2e-82 309.3 261 60.5
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.6e-81 307.0 301 54.5
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 2.7e-81 306.2 298 56.4
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 3.0e-80 302.8 279 58.8
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 3.9e-80 302.4 269 60.6
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 2.6e-79 299.7 305 55.1
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.3e-79 299.3 279 58.8
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 4.4e-79 298.9 294 55.1
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.2e-78 296.6 304 52.3
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 2.6e-76 289.7 294 56.5
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.3e-75 287.3 285 54.7
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.3e-75 287.3 297 52.5
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.7e-75 287.0 234 61.5
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 2.9e-75 286.2 299 52.2
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 2.9e-75 286.2 285 54.7
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 1.4e-74 283.9 273 56.0
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 9.4e-74 281.2 231 60.6
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 9.4e-74 281.2 297 52.2
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 2.7e-73 279.6 305 53.4
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 3.6e-73 279.3 291 50.9
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 1.0e-72 277.7 296 54.1
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 3.0e-72 276.2 301 51.8
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 6.7e-72 275.0 292 50.7
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 8.8e-72 274.6 298 50.0
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.3e-71 272.7 273 54.6
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.4e-71 272.3 279 54.1
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 1.3e-70 270.8 292 52.4
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.7e-70 270.4 285 52.3
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 3.7e-70 269.2 291 50.2
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.6e-68 263.8 298 48.0
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 3.8e-67 259.2 284 49.6
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 3.8e-67 259.2 306 50.3
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 6.5e-67 258.5 297 51.2
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.1e-66 257.7 299 47.8
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.1e-66 257.7 267 53.6
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 1.9e-66 256.9 299 48.2
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 5.5e-66 255.4 309 49.5
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 4.7e-65 252.3 293 48.8
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.8e-64 250.4 251 54.6
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 5.7e-63 245.4 231 60.2
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 5.7e-63 245.4 216 57.9
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 9.7e-63 244.6 298 46.0
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 1.3e-62 244.2 300 47.7
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 1.2e-60 237.7 225 55.1
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 2.0e-60 236.9 313 43.1
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 2.0e-60 236.9 225 55.1
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 3.5e-60 236.1 226 54.0
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 2.2e-59 233.4 299 45.2
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.2e-59 233.4 134 85.8
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 5.0e-59 232.3 237 56.1
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.5e-58 229.9 290 49.0
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.2e-57 227.6 294 42.9
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.2e-57 227.6 304 45.1
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 4.4e-55 219.2 294 42.9
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 4.8e-54 215.7 250 48.8
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 8.3e-54 214.9 264 47.7
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 1.6e-52 210.7 266 46.6
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.6e-49 199.5 187 56.7
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 4.0e-48 196.1 220 48.2
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 7.5e-47 191.8 277 45.5
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 6.3e-46 188.7 227 51.5
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.1e-45 188.0 124 69.4
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 5.0e-43 179.1 303 39.6
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 2.1e-41 173.7 198 49.5
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.1e-41 172.2 293 41.6
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 1.8e-40 170.6 234 43.6
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.2e-39 167.9 138 63.8
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 7.8e-36 155.2 293 36.2
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.9e-34 150.6 103 72.8
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.5e-34 150.2 209 42.6
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 9.5e-34 148.3 110 62.7
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 8.3e-30 135.2 189 47.1
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.1e-29 134.8 298 30.9
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.6e-28 131.0 222 34.2
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 6.0e-28 129.0 273 37.0
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 5.1e-27 125.9 257 31.5
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 2.6e-23 113.6 120 50.0
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.1e-20 104.0 65 69.2
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.1e-20 104.0 65 69.2
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 3.0e-19 100.1 295 27.1
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 3.0e-19 100.1 67 70.1
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 8.9e-16 88.6 81 58.0
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 8.1e-09 65.5 132 33.3
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 1.3e-06 58.2 147 26.5


User provided reference genes

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